you'll then need to use that to mask the input volume to recover the true original 16 (or 12) bit resolution.

On Fri, 9 Oct 2009, Nick Schmansky wrote:

add -odt int to the mri_convert flag:

mri_convert -odt int brainmask.mgz brainmask.nii

which saves the output file in 'integer' data format.

On Fri, 2009-10-09 at 18:16 +0200, Jose Luis Cantero Lorente wrote:

...

Hi there,

would it be feasible to save to .nii the skull stripped image obtained with Freesurfer but keeping the original image resolution? As it is, Freesurfer allows you this operation, but the resultant .nii image comes with a poor resolution (8-bits) which is useless for my purpose.

Thanks in advance.

Best, Jose

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Jose Luis Cantero, Ph.D. Laboratory of Functional Neuroscience Department of Physiology, Anatomy, and Cell Biology University Pablo de Olavide Ctra. de Utrera, Km.1 41013 - Sevilla

• Spain -

Phone: +34 954 977433 Fax: +34 954 349151 Email: jlcanlor@upo.es http://www.upo.es/neuroaging/es/

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