Hi Nick,

Thank you for your fast answer. I downloaded yesterday the version5 and I was trying to execute the whole process with the new one. It's running now, and I will tell you if it finishes without errors.

Thank you.

Jordi.

On Mon, Oct 18, 2010 at 4:26 PM, Nick Schmansky nicks@nmr.mgh.harvard.eduwrote:

is it possible for you to update to v5.0? v5 fixes the mris_volmask library problems.

n.

On Mon, 2010-10-18 at 10:12 +0200, Jordi Casals wrote:

...

Hello everybody.

There is a few days I try to run a recon-all process with one subject and there is some problem that can't let the process finish correctly. The command I want to run is the next one:

recon-all -autorecon2-wm -force -i /nfs/arpon/PROJCT/DEPR/orig/DICOM/T13D/GMI_544/GMI_544_0002 -s GMI_544 -qcache

And the final errors I get are the next ones:

/nfs/arpon/PROJCT/DEPR/proc/FREESURFER/OutPBS/AAA_000/mri

mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon --save_distance AAA_000

mris_volmask.bin: symbol lookup error: /usr/lib/nvidia/libGL.so.1: undefined symbol: _nv000049gl Linux machine.domain 2.6.18-164.11.1.el5 #1 SMP Wed Jan 20 00:57:09 EST 2010 x86_64 x86_64 x86_64 GNU/Linux

recon-all exited with ERRORS at Sun Oct 17 06:58:15 CEST 2010

I wanted to know if these errors are caused by the execution of the subject or if it's my work environment.

Thank you,

Jordi Casals _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.