Yes I would like to open with fslview (FSL) the sig.nii.gz of each subject which is computed by seed-based analysis by FS-FAST. I have mask the sig.nii.gz by fslmaths -div I have run: mri_vol2surf --src sig_mask.nii.gz --src_type nii.gz --srcreg subj/rest/001/register.dof6.dat --hemi rh --o prova.nii.gz
but when I open the prova.nii.gz with fslview the windows is empty with a line.
Thanks
Stefano
----Messaggio originale---- Da: greve@nmr.mgh.harvard.edu Data: 29-set-2015 22.09 A: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] R: import FS-FAST results in FSL
Do you mean surface-based analysis? You'd have to put them back into
the
volume using mri_surf2vol, write them out as nifti and then run
fslview
on them
On 09/29/2015 11:17 AM, stdp82@virgilio.it wrote:
Hi list, I would like to import FS-FAST results (conjunction maps) in
FSL,
opening them by fslview. Could you provide me any suggestion? Thank you very much Best regards, Stefano
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
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Hi Stefano
mri_vol2surf samples the volume onto the surface and saves it as a 1D list of values, one per surface vertex. You can't view that in fslview AFAIK - you need to load a surface in freeview/tksurfer and visualize it as an overlay on the surface.
cheers Bruce On Tue, 27 Oct 2015, stdp82@virgilio.it wrote:
Yes I would like to open with fslview (FSL) the sig.nii.gz of each subject which is computed by seed-based analysis by FS-FAST. I have mask the sig.nii.gz by fslmaths -div I have run: mri_vol2surf --src sig_mask.nii.gz --src_type nii.gz --srcreg subj/rest/001/register.dof6.dat --hemi rh --o prova.nii.gz
but when I open the prova.nii.gz with fslview the windows is empty with a line.
Thanks
Stefano
----Messaggio originale---- Da: greve@nmr.mgh.harvard.edu Data: 29-set-2015 22.09 A: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] R: import FS-FAST results in FSL
Do you mean surface-based analysis? You'd have to put them back into
the
volume using mri_surf2vol, write them out as nifti and then run
fslview
on them
On 09/29/2015 11:17 AM, stdp82@virgilio.it wrote:
Hi list, I would like to import FS-FAST results (conjunction maps) inFSL,
opening them by fslview. Could you provide me any suggestion? Thank you very much Best regards, Stefano
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.
edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to
whom it is
addressed. If you believe this e-mail was sent to you in error and
the e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to
you in error
but does not contain patient information, please contact the sender
and properly
dispose of the e-mail.
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
-
Bruce Fischl -
stdp82＠virgilio.it