Hi Jared,

mri_robust_register might be good for the task, the problem: - only worked with structural intensity data so far - I never tested it on 2D data. It should not be too difficult to get it to run, though. Can you send me some of your images, and I will try to add the functionality (if not too difficult).

-Martin

On Fri, 2009-08-14 at 18:18 -0400, Jared Price wrote:

Hi all, I have some images (2-d (single slice)) from mouse brains which show gene expression data from in-situ hybridization from several different mice. I would like to align each of these images with one another. Does anyone know of a really good tool for that sort of thing? Ideally I am looking to perform a 6-parameter transform of these images to bring them all into the same space. I know mri_robust_register does something similar for structural images of the human brain. Does anyone know of a good tool for this kind of thing? I thought someone in the freesurfer world might know. All the best and thanks for the help, Jared

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