External Email - Use Caution
Dear FS experts,
I am encountering an error when running recon-all. I followed the FAQ https://secure-web.cisco.com/1UCt6p3edZmVlY3vv2VBSKmRgX9p8Xmur_qX9QMrgPbk8pWw9hHbqUAl1LZ_m2e32JfBHVEoBVrUNQvjBq0U3vvtrtjgPoZTjX7UkqLsMktSt6nn2RFU4zp2wd0wdpswqNm6XAl9mk5UJ-1PEUODQnSFar41wBeWSIboTu0lN5gBeRyNoAiCUEA08mjSPuoyXwcECXM_2QBB8tx8EDMX4WoG7o1xLXJBbOOhubNG1AZpDhbgMLaeECRxthEWcFlWJ8lzNAufWmLdKKeuBWvN8XHkoFomG8UPqPs_pZSPStv6BCjQ0hhTDOYaOfyeLOqA3/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FUserContributions%2FFAQ%23Q.Help.21Igotthiserrormessage.3A.22mriwatershederror.3AGLOBALregionofthebrainempty.21.22-whatshouldIdo.3F page to rerun the command but still not running through. Would you please kindly advise? The log file is attached to this email.
Thank you.
Regards, Krystal
Tel.: +852 2255 5024 Fax: +852 2872 5828 Address: Room 304, 3/F, New Clinical Building, 102 Pokfulam Road, Hong Kong.
External Email - Use Caution
Dear FS experts,
I would like to follow up with the matter here - the T1.mgz isn't generated so I cannot inspect the image as instructed by the wiki page. I have checked the orientation on FreeView but it's correct. Would you please kindly advise?
Thank you so much. It's been grateful to have your guidance and support.
Sincerely,
Krystal
FreeSurfer Version: 7.3.2
OS: Linux on Ubuntu 23.04
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Krystal Xiwing Yau krystaly@hku.hk Sent: 29 April 2024 16:58:18 To: Freesurfer support list Subject: [Freesurfer] [FreeSurfer] recon-all exited with error - watershed error
External Email - Use Caution
Dear FS experts,
I am encountering an error when running recon-all. I followed the FAQ https://secure-web.cisco.com/1UCt6p3edZmVlY3vv2VBSKmRgX9p8Xmur_qX9QMrgPbk8pWw9hHbqUAl1LZ_m2e32JfBHVEoBVrUNQvjBq0U3vvtrtjgPoZTjX7UkqLsMktSt6nn2RFU4zp2wd0wdpswqNm6XAl9mk5UJ-1PEUODQnSFar41wBeWSIboTu0lN5gBeRyNoAiCUEA08mjSPuoyXwcECXM_2QBB8tx8EDMX4WoG7o1xLXJBbOOhubNG1AZpDhbgMLaeECRxthEWcFlWJ8lzNAufWmLdKKeuBWvN8XHkoFomG8UPqPs_pZSPStv6BCjQ0hhTDOYaOfyeLOqA3/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FUserContributions%2FFAQ%23Q.Help.21Igotthiserrormessage.3A.22mriwatershederror.3AGLOBALregionofthebrainempty.21.22-whatshouldIdo.3F page to rerun the command but still not running through. Would you please kindly advise? The log file is attached to this email.
Thank you.
Regards, Krystal
Tel.: +852 2255 5024 Fax: +852 2872 5828 Address: Room 304, 3/F, New Clinical Building, 102 Pokfulam Road, Hong Kong.
freesurfer@nmr.mgh.harvard.edu
-
Krystal Xiwing Yau