From: Douglas N Greve So ismac.m is not defined in your matlab implementation? What version of matlab are you using? What kind of computer are you running on?
Aral's answer: I am working through VPN and connect to a Linux server using my laptop (Thinkpad2011). Not sure which version of Matlab, this freesurfer5.3 home directory uses, but I have matlab2010 opened on linux when I ran LGI command. although in job output file, it shows a warning that Matlab starting without a display, then it says <MATLAB> copyright 1984-2005 the Mathwork. Inc, version7.1.0.183 (R14) service pack3, Aug2,2005
Thanks, Aral
aral ahmadi wrote:
Dear experts
I have a question regarding Freesurfer- LGI error I got during running LGI after all recon steps been ran with no problem. you could see the error below.
*reading filled volume...
*??? undefined function or variable 'ismac'.* *error in -->load_mgh at 68*
*if(strcmp(computer,'MAC') || strcmp(computer,'MAC') || ismac)*
*error in -->MRIread at 87*
*[mri, voi, M, mr_parms, volsz] = load_mgh (fspec, [], [], headeronly);*
*error in --> make outer-surface at 24*
*vol = MRIread(filled_volume);* ** *>> ERROR:make _outer_surface did not creat output file 'net/storage1/usr2/onrc/home/p2/Aahmadi/onrc/data/Aral-july/test/subject* *Linux compute31 2.6.32-504.12.2.e16.*86_64 #1 SMP Wed Mar11 UTC 2015 86_64 86_64 GNU/Linux*
*recon-all -s S1091RPY existed with Errors at thu jan19 2017*
The error is ...Undefined function or variable 'ismac' - matlab is expecting that variable to be defined (it's trying to detect the OS, whether Linux, windows/ Mac), but it isn't. *
I appreciate if you give me your advice on this issue.
Thanks,
Aral
I think the ismac.m script was introduced in later versions of matlab. You can just create your own with the following content:
function y=ismac
y=0;
return
On 02/15/2017 01:59 PM, aral ahmadi wrote:
From: Douglas N Greve So ismac.m is not defined in your matlab implementation? What version of matlab are you using? What kind of computer are you running on?
Aral's answer: I am working through VPN and connect to a Linux server using my laptop (Thinkpad2011). Not sure which version of Matlab, this freesurfer5.3 home directory uses, but I have matlab2010 opened on linux when I ran LGI command. although in job output file, it shows a warning that Matlab starting without a display, then it says <MATLAB> copyright 1984-2005 the Mathwork. Inc, version7.1.0.183 (R14) service pack3, Aug2,2005
Thanks, Aral
aral ahmadi wrote:
Dear experts
I have a question regarding Freesurfer- LGI error I got during running LGI after all recon steps been ran with no problem. you could see the error below.
*reading filled volume...
*??? undefined function or variable 'ismac'.* *error in -->load_mgh at 68*
*if(strcmp(computer,'MAC') || strcmp(computer,'MAC') || ismac)*
*error in -->MRIread at 87*
*[mri, voi, M, mr_parms, volsz] = load_mgh (fspec, [], [], headeronly);*
*error in --> make outer-surface at 24*
*vol = MRIread(filled_volume);* ** *>> ERROR:make _outer_surface did not creat output file 'net/storage1/usr2/onrc/home/p2/Aahmadi/onrc/data/Aral-july/test/subject* *Linux compute31 2.6.32-504.12.2.e16.*86_64 #1 SMP Wed Mar11 UTC 2015 86_64 86_64 GNU/Linux*
*recon-all -s S1091RPY existed with Errors at thu jan19 2017*
The error is ...Undefined function or variable 'ismac' - matlab is expecting that variable to be defined (it's trying to detect the OS, whether Linux, windows/ Mac), but it isn't. *
I appreciate if you give me your advice on this issue.
Thanks,
Aral
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Douglas N Greve