Run recon-all on the anatomical templates, then use mri_vol2surf (wiht --projfrac 0.5) to sample the segmentations onto the surface, then use mris_seg2annot to convert to annotation

On 9/9/19 6:10 PM, Dev vasu wrote:

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Dear all,

How can i create .annot files for both left and right hemisphere from nifti atlases http://www.gin.cnrs.fr/en/tools/aal/

are there any specific guidelines or  commands for surface based parcellation ?

Thanks Vasudev

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