I am trying to use the output meshes from freesurfer (lh/rh.pial and lh/rh.white converted to .stl) with the BET meshes from FSL. They seem to be in different coordinate systems and have to be moved and scaled to match correctly. Is there an easy transform that can do this. I have tried several with no success.
---Todd Krieg Illinois Institute of Technology
Todd, have you looked at our documentation on coordinate systems? http://www.freesurfer.net/fswiki/CoordinateSystems?action=AttachFile&do=... This gives the relationship between the FS and FSL coords doug
Todd Krieg wrote:
I am trying to use the output meshes from freesurfer (lh/rh.pial and lh/rh.white converted to .stl) with the BET meshes from FSL. They seem to be in different coordinate systems and have to be moved and scaled to match correctly. Is there an easy transform that can do this. I have tried several with no success.
---Todd Krieg Illinois Institute of Technology
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Douglas N Greve -
Todd Krieg