Dear freesurfer list, I have got this message while trying to load the saved project file
ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/fsaverage/label/*.aparc.annot /tmp/qdec_project_archive/fsaverage/label ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-curva_aprendizaje-thickness-fwhm10 /tmp/qdec_project_archive ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/qdec.table.dat /tmp/qdec_project_archive cp /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/*.levels /tmp/qdec_project_archive cd /tmp; zip -r /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-thickness-fwhm10.qdec qdec_project_archive > /dev/null rm -rf /tmp/qdec_project_archive Saving project file done.
Loading data table /tmp/qdec_project_archive/qdec.table.dat... ERROR: could not open /tmp/qdec_project_archive/qdec.table.dat Error loading the project file.
When saving there is no error message, but when trying to load the saved project file, then the error pops up, any idea is appreciated.
Natalia.
does the directory /tmp/qdec_project_archive exist? is there a qdec.table.dat file within that dir? is it readable?
n. On Tue, 2011-05-10 at 11:57 +0200, Natalia Francisca wrote:
Dear freesurfer list, I have got this message while trying to load the saved project file
ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/fsaverage/label/*.aparc.annot /tmp/qdec_project_archive/fsaverage/label ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-curva_aprendizaje-thickness-fwhm10 /tmp/qdec_project_archive ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/qdec.table.dat /tmp/qdec_project_archive cp /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/*.levels /tmp/qdec_project_archive cd /tmp; zip -r /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-thickness-fwhm10.qdec qdec_project_archive > /dev/null rm -rf /tmp/qdec_project_archive Saving project file done.
Loading data table /tmp/qdec_project_archive/qdec.table.dat... ERROR: could not open /tmp/qdec_project_archive/qdec.table.dat Error loading the project file.
When saving there is no error message, but when trying to load the saved project file, then the error pops up, any idea is appreciated.
Natalia. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Nick, the qdec_project_archive exists in /tmp after clicking Save Project, but the qdec.table.dat does not exist in /tmp. but in my working dir, i have the qdec.table.dat, i tried to copy this .dat into /tmp manually and chmod a+x, and start qdec gui and load the .qdec in working dir, still the error comes:
Loading data table /tmp/qdec_project_archive/qdec.table.dat... ERROR: could not open /tmp/qdec_project_archive/qdec.table.dat Error loading the project file.
it somehow removes the qdec.table.dat when after clicking "load project file"
On Tue, May 10, 2011 at 4:41 PM, Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
does the directory /tmp/qdec_project_archive exist? is there a qdec.table.dat file within that dir? is it readable?
n. On Tue, 2011-05-10 at 11:57 +0200, Natalia Francisca wrote:
Dear freesurfer list, I have got this message while trying to load the saved project file
ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/fsaverage/label/*.aparc.annot /tmp/qdec_project_archive/fsaverage/label ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-curva_aprendizaje-thickness-fwhm10 /tmp/qdec_project_archive ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/qdec.table.dat /tmp/qdec_project_archive cp /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/*.levels /tmp/qdec_project_archive cd /tmp; zip -r /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-thickness-fwhm10.qdec qdec_project_archive > /dev/null rm -rf /tmp/qdec_project_archive Saving project file done.
Loading data table /tmp/qdec_project_archive/qdec.table.dat... ERROR: could not open /tmp/qdec_project_archive/qdec.table.dat Error loading the project file.
When saving there is no error message, but when trying to load the saved project file, then the error pops up, any idea is appreciated.
Natalia. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
natalia,
i'm not able to replicate this error, that is, i am able to create a project file (which gets named 'Untitled.qdec' by default) and then load it, both immediately, and later after restarting qdec.
what os and freesurfer version are you using?
n.
On Tue, 2011-05-10 at 17:02 +0200, Natalia Francisca wrote:
Hi Nick, the qdec_project_archive exists in /tmp after clicking Save Project, but the qdec.table.dat does not exist in /tmp. but in my working dir, i have the qdec.table.dat, i tried to copy this .dat into /tmp manually and chmod a+x, and start qdec gui and load the .qdec in working dir, still the error comes:
Loading data table /tmp/qdec_project_archive/qdec.table.dat... ERROR: could not open /tmp/qdec_project_archive/qdec.table.dat Error loading the project file.
it somehow removes the qdec.table.dat when after clicking "load project file"
On Tue, May 10, 2011 at 4:41 PM, Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
does the directory /tmp/qdec_project_archive exist? is there a qdec.table.dat file within that dir? is it readable?
n. On Tue, 2011-05-10 at 11:57 +0200, Natalia Francisca wrote:
Dear freesurfer list, I have got this message while trying to load the saved project file
ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/fsaverage/label/*.aparc.annot /tmp/qdec_project_archive/fsaverage/label ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-curva_aprendizaje-thickness-fwhm10 /tmp/qdec_project_archive ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/qdec.table.dat /tmp/qdec_project_archive cp /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/*.levels /tmp/qdec_project_archive cd /tmp; zip -r /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-thickness-fwhm10.qdec qdec_project_archive > /dev/null rm -rf /tmp/qdec_project_archive Saving project file done.
Loading data table /tmp/qdec_project_archive/qdec.table.dat... ERROR: could not open /tmp/qdec_project_archive/qdec.table.dat Error loading the project file.
When saving there is no error message, but when trying to load the saved project file, then the error pops up, any idea is appreciated.
Natalia. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Nick, I´m using mac 10.6.7 and freesurfer-Darwin-leopard-i686-stable-pub-v4.5.0 am not sure why the error comes, i have the access to read write and execute the files/folders.
On Tue, May 10, 2011 at 7:27 PM, Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
natalia,
i'm not able to replicate this error, that is, i am able to create a project file (which gets named 'Untitled.qdec' by default) and then load it, both immediately, and later after restarting qdec.
what os and freesurfer version are you using?
n.
On Tue, 2011-05-10 at 17:02 +0200, Natalia Francisca wrote:
Hi Nick, the qdec_project_archive exists in /tmp after clicking Save Project, but the qdec.table.dat does not exist in /tmp. but in my working dir, i have the qdec.table.dat, i tried to copy this .dat into /tmp manually and chmod a+x, and start qdec gui and load the .qdec in working dir, still the error comes:
Loading data table /tmp/qdec_project_archive/qdec.table.dat... ERROR: could not open /tmp/qdec_project_archive/qdec.table.dat Error loading the project file.
it somehow removes the qdec.table.dat when after clicking "load project file"
On Tue, May 10, 2011 at 4:41 PM, Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
does the directory /tmp/qdec_project_archive exist? is there a qdec.table.dat file within that dir? is it readable?
n. On Tue, 2011-05-10 at 11:57 +0200, Natalia Francisca wrote:
Dear freesurfer list, I have got this message while trying to load the saved project file
ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/fsaverage/label/*.aparc.annot /tmp/qdec_project_archive/fsaverage/label ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-curva_aprendizaje-thickness-fwhm10 /tmp/qdec_project_archive ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/qdec.table.dat /tmp/qdec_project_archive cp /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/*.levels /tmp/qdec_project_archive cd /tmp; zip -r /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-thickness-fwhm10.qdec qdec_project_archive > /dev/null rm -rf /tmp/qdec_project_archive Saving project file done.
Loading data table /tmp/qdec_project_archive/qdec.table.dat... ERROR: could not open /tmp/qdec_project_archive/qdec.table.dat Error loading the project file.
When saving there is no error message, but when trying to load the saved project file, then the error pops up, any idea is appreciated.
Natalia. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
would it be possible to send me your .qdec project file? it can be uploaded to me using our file drop: https://www.nmr.mgh.harvard.edu/facility/filedrop/index.html
and i'll see if i can replicate the problem here.
another option is to get a beta of the upcoming v5.1: ftp://www.freesurfer.net/pub/dist/freesurfer/5.1.0/
although i dont think anything was fixed in regards to what you are seeing.
n.
On Wed, 2011-05-11 at 16:13 +0200, Natalia Francisca wrote:
Hi Nick, I´m using mac 10.6.7 and freesurfer-Darwin-leopard-i686-stable-pub-v4.5.0 am not sure why the error comes, i have the access to read write and execute the files/folders.
On Tue, May 10, 2011 at 7:27 PM, Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
natalia,
i'm not able to replicate this error, that is, i am able to create a project file (which gets named 'Untitled.qdec' by default) and then load it, both immediately, and later after restarting qdec.
what os and freesurfer version are you using?
n.
On Tue, 2011-05-10 at 17:02 +0200, Natalia Francisca wrote:
Hi Nick, the qdec_project_archive exists in /tmp after clicking Save Project, but the qdec.table.dat does not exist in /tmp. but in my working dir, i have the qdec.table.dat, i tried to copy this .dat into /tmp manually and chmod a+x, and start qdec gui and load the .qdec in working dir, still the error comes:
Loading data table /tmp/qdec_project_archive/qdec.table.dat... ERROR: could not open /tmp/qdec_project_archive/qdec.table.dat Error loading the project file.
it somehow removes the qdec.table.dat when after clicking "load project file"
On Tue, May 10, 2011 at 4:41 PM, Nick Schmansky nicks@nmr.mgh.harvard.edu wrote:
does the directory /tmp/qdec_project_archive exist? is there a qdec.table.dat file within that dir? is it readable?
n. On Tue, 2011-05-10 at 11:57 +0200, Natalia Francisca wrote:
Dear freesurfer list, I have got this message while trying to load the saved project file
ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/fsaverage/label/*.aparc.annot /tmp/qdec_project_archive/fsaverage/label ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-curva_aprendizaje-thickness-fwhm10 /tmp/qdec_project_archive ln -s /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/qdec.table.dat /tmp/qdec_project_archive cp /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/*.levels /tmp/qdec_project_archive cd /tmp; zip -r /Volumes/FreeSurfer_ALL/CorticalThickness/IZQUIERDA/qdec/lh-thickness-fwhm10.qdec qdec_project_archive > /dev/null rm -rf /tmp/qdec_project_archive Saving project file done.
Loading data table /tmp/qdec_project_archive/qdec.table.dat... ERROR: could not open /tmp/qdec_project_archive/qdec.table.dat Error loading the project file.
When saving there is no error message, but when trying to load the saved project file, then the error pops up, any idea is appreciated.
Natalia. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Natalia Francisca -
Nick Schmansky