Hi
What kind of queue software is used for Freesurfer to enable multiple instance across several CPU in mulit-core system? Is thesse software available in either Fedora or Ubuntu? I am working with 14 years old image which has enlarged ventricles. What is the recommend setting to remove non-brain tissue like dura from the MRI pictures?
Cheers Knut J Bjuland
Hi Knut
locally we use pbsubmit, but really any queue software should be fine. Do the default settings not work for removing non-brain tissue? Note that as long as the surfaces don't include it it shouldn't matter if it is present in the images.
cheers Bruce
On Thu, 30 Jun 2011, Knut J Bjuland wrote:
Hi
What kind of queue software is used for Freesurfer to enable multiple instance across several CPU in mulit-core system? Is thesse software available in either Fedora or Ubuntu? I am working with 14 years old image which has enlarged ventricles. What is the recommend setting to remove non-brain tissue like dura from the MRI pictures?
Cheers Knut J Bjuland _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
On Thu, Jun 30, 2011 at 9:11 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
locally we use pbsubmit, but really any queue software should be fine.
Note that pbsubmit is a Martinos-Center wrapper to OpenPBS/Torque Resource Manager. An alternative is Sun^H^H^HOracle Grid Engine (which is also free).
Richard
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Knut J Bjuland -
R Edgar