Dear FreeSurfer team,
I am currently running mri_glmfir --eres-save using FreeSurfer 6.0. However, there is an error saying "not enough memory to buffer." I have attached the error log for your reference. Do you have any idea how I can solve this problem?
Thank you.
Regards, Heidi
It actually looks like it might be a problem with your covariates.mat file (MatrixReadTxT error). Can you send that file?
On 08/22/2016 10:06 PM, Heidi Foo wrote:
Dear FreeSurfer team,
I am currently running mri_glmfir --eres-save using FreeSurfer 6.0. However, there is an error saying "not enough memory to buffer." I have attached the error log for your reference. Do you have any idea how I can solve this problem?
Thank you.
Regards, Heidi
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Douglas,
Attached the covariates.mat file.
Thanks.
Regards, Heidi Foo
---------- Forwarded message ---------- From: Douglas N Greve greve@nmr.mgh.harvard.edu Date: Thu, Aug 25, 2016 at 6:45 AM Subject: Re: [Freesurfer] Cannot allocate memory mri_glmfit to remove covariates To: freesurfer@nmr.mgh.harvard.edu
It actually looks like it might be a problem with your covariates.mat file (MatrixReadTxT error). Can you send that file?
On 08/22/2016 10:06 PM, Heidi Foo wrote:
Dear FreeSurfer team,
I am currently running mri_glmfir --eres-save using FreeSurfer 6.0. However, there is an error saying "not enough memory to buffer." I have attached the error log for your reference. Do you have any idea how I can solve this problem?
Thank you.
Regards, Heidi
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
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The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
This looks like it is a binary matlab file. This should be a simple text ascii file.
On 8/24/16 9:01 PM, Heidi Foo wrote:
Hi Douglas,
Attached the covariates.mat file.
Thanks.
Regards, Heidi Foo
---------- Forwarded message ---------- From: *Douglas N Greve* <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> Date: Thu, Aug 25, 2016 at 6:45 AM Subject: Re: [Freesurfer] Cannot allocate memory mri_glmfit to remove covariates To: freesurfer@nmr.mgh.harvard.edu mailto:freesurfer@nmr.mgh.harvard.edu
It actually looks like it might be a problem with your covariates.mat file (MatrixReadTxT error). Can you send that file?
On 08/22/2016 10:06 PM, Heidi Foo wrote:
Dear FreeSurfer team,
I am currently running mri_glmfir --eres-save using FreeSurfer 6.0. However, there is an error saying "not enough memory to buffer." I have attached the error log for your reference. Do you have any idea how I can solve this problem?
Thank you.
Regards, Heidi
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 tel:617-724-2358 Fax: 617-726-7422 tel:617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu mailto:Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Thanks Douglas, it works now!
On Thu, Aug 25, 2016 at 6:45 AM, Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
It actually looks like it might be a problem with your covariates.mat file (MatrixReadTxT error). Can you send that file?
On 08/22/2016 10:06 PM, Heidi Foo wrote:
Dear FreeSurfer team,
I am currently running mri_glmfir --eres-save using FreeSurfer 6.0. However, there is an error saying "not enough memory to buffer." I have attached the error log for your reference. Do you have any idea how I can solve this problem?
Thank you.
Regards, Heidi
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu