If you are using output froom mri_segstats, then you need to use asegstats2table, not aparcstats2table. It can be confusing ...

On 11/01/2018 05:06 PM, Figueiro Longo, Maria Gabriela wrote:

Hi,

I extracted some volumes using mri_annotation2lable --> mri_aparc2aseg --> mri_segstats <file>.

Now I am trying to extract the summary table using aparcstats2table --parcs-from-file <file>, but every time an error message pops up:

ERROR: cannot read <file>

The stats files generated by the mri_segstats look correct (similar with the other files in the directory) and I can read the volumes of each individual.

The last command that has an error is:

aparcstats2table --qdec-long qdec.txt --hemi lh --meas volume --parcs-from-file <file> --tablefile volumes.txt

I really appreciate any help!

Thanks!

Gabriela

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