Dear expert
I'm beginner in using Freesurfer and I really need your help. However I've read all related responded questions about paralleling process. I found -openmp N flag to do that, but I don't understand its correct location in 'recon-all'. I used it as follows but it doesn't work. Also I want to use -qcache flag in addition to -openmp N. Would you please kindly let me know in which order, these flags should be used? I really appreciate your kind help.
recon-all -i SerieMR-0002.dcm-subjid Results -all –openmp8 –qcache I'm looking forward to hearing from you.
Best Regards
F. Keyvanfard
F.Keyvanfard
You provided us with very little information to help you solve your problem. Please read the "How to describe you problem" section of our wiki:
https://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
However, after looking at your exact command, it appears you are using the "long dash" (or em dash) for your command line switches instead of the standard hyphen. Try using the standard hyphen as that worked for me.
-Zeke
On 10/13/2016 03:16 PM, Farzaneh keyvanfard wrote:
Dear expert
I'm beginner in using Freesurfer and I really need your help. However I've read all related responded questions about paralleling process. I found -openmp N flag to do that, but I don't understand its correct location in 'recon-all'. I used it as follows but it doesn't work. Also I want to use -qcache flag in addition to -openmp N. Would you please kindly let me know in which order, these flags should be used? I really appreciate your kind help.
recon-all -i SerieMR-0002.dcm -subjid Results -all –openmp 8 –qcache / / I'm looking forward to hearing from you.
Best Regards*
F. Keyvanfard*
F.Keyvanfard
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Also, don't use -qcache until after you have run and manually inspected your analysis
On 10/13/16 3:29 PM, Z K wrote:
You provided us with very little information to help you solve your problem. Please read the "How to describe you problem" section of our wiki:
https://surfer.nmr.mgh.harvard.edu/fswiki/BugReportingHowever, after looking at your exact command, it appears you are using the "long dash" (or em dash) for your command line switches instead of the standard hyphen. Try using the standard hyphen as that worked for me.
-Zeke
On 10/13/2016 03:16 PM, Farzaneh keyvanfard wrote:
Dear expert
I'm beginner in using Freesurfer and I really need your help. However I've read all related responded questions about paralleling process. I found -openmp N flag to do that, but I don't understand its correct location in 'recon-all'. I used it as follows but it doesn't work. Also I want to use -qcache flag in addition to -openmp N. Would you please kindly let me know in which order, these flags should be used? I really appreciate your kind help.
recon-all -i SerieMR-0002.dcm -subjid Results -all –openmp 8 –qcache / / I'm looking forward to hearing from you.
Best Regards*
F. Keyvanfard*
F.Keyvanfard
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
freesurfer@nmr.mgh.harvard.edu
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Douglas Greve -
Farzaneh keyvanfard -
Z K