Hi, I am processing the 3D PD patients brain now . After recon-all running, when I use the TKSurfer Tool to review the 3D brain, it is reverse and mistake the left and right. I test some other data and realized it may be something wrong with the Tksufer installing.How can I fix it? Thanks, Huang.
Hi Huang, I have similar question with you. In my case, I cannot visualizing inflated image by tksurfer but freeview. Looking forward to someone's help. All the best.
2013-12-14
Rujing Zha
发件人："Xiaojun.Huang" lvdosha@gmail.com 发送时间：2013-12-14 20:44 主题：[Freesurfer] A prblem of tksufer tool 收件人："Freesurfer"Freesurfer@nmr.mgh.harvard.edu 抄送：
Hi, I am processing the 3D PD patients brain now . After recon-all running, when I use the TKSurfer Tool to review the 3D brain, it is reverse and mistake the left and right. I test some other data and realized it may be something wrong with the Tksufer installing.How can I fix it? Thanks, Huang. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
Hi Rujing
can you describe your freeview problems again?
thanks Bruce
On Sat, 14 Dec 2013, Rujing Zha wrote:
Hi Huang, I have similar question with you. In my case, I cannot visualizing inflated image by tksurfer but freeview. Looking forward to someone's help. All the best. 2013-12-14
Rujing Zha
发件人："Xiaojun.Huang" lvdosha@gmail.com 发送时间：2013-12-14 20:44 主题：[Freesurfer] A prblem of tksufer tool 收件人："Freesurfer"Freesurfer@nmr.mgh.harvard.edu 抄送： Hi, I am processing the 3D PD patients brain now . After recon-all running, when I use the TKSurfer Tool to review the 3D brain, it is reverse and mistake the left and right. I test some other data and realized it may be something wrong with the Tksufer installing.How can I fix it? Thanks, Huang. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer%C2%A0 The information in this e-mail is intended only for the person to whom it i s addressed. If you believe this e-mail was sent to you in error and the e-ma il contains patient information, please contact the Partners Compliance HelpLi ne at http://www.partners.org/complianceline%C2%A0.%C2%A0If%C2%A0the%C2%A0e-mail%C... rror but does not contain patient information, please contact the sender and pro perly dispose of the e-mail.
Hi Bruce, Thanks Bruce. And I am so sorry for replying this so late. I could not visualize the inflated image properly by tksurfer. Here was the detailed describe: tksurfer yizhihui rh inflated I could see little thing in the tksurfer after typing the command above. The result can be got in picture 1 of the attachment and the standard output message can be seen in the picture 2. I had visualized it in the freeview tool by typing "freeview -f $SUBJETCS_DIR/yizhihui/surf/rh.inflated ". The result can be seen in picture 3. CentOS 5.8 is used in my server and I use "freesurfer-Linux-centos4-stable-pib-v5.3.0". Thanks again Bruce. Your reply will be highly appreciated. All the best.
2013-12-16
Rujing Zha
发件人：Bruce Fischl fischl@nmr.mgh.harvard.edu 发送时间：2013-12-15 02:17 主题：Re: [Freesurfer] A prblem of tksufer tool 收件人："Rujing Zha"charujing123@163.com 抄送："Ruopeng Wang"rpwang@nmr.mgh.harvard.edu,"Xiaojun.Huang"lvdosha@gmail.com,"freesurfer"freesurfer@nmr.mgh.harvard.edu
Hi Rujing
can you describe your freeview problems again?
thanks Bruce
On Sat, 14 Dec 2013, Rujing Zha wrote:
Hi Huang, I have similar question with you. In my case, I cannot visualizing inflated image by tksurfer but freeview. Looking forward to someone's help. All the best.
2013-12-14
Rujing Zha
发件人："Xiaojun.Huang" lvdosha@gmail.com 发送时间：2013-12-14 20:44 主题：[Freesurfer] A prblem of tksufer tool 收件人："Freesurfer"Freesurfer@nmr.mgh.harvard.edu 抄送：
Hi, I am processing the 3D PD patients brain now . After recon-all running, when I use the TKSurfer Tool to review the 3D brain, it is reverse and mistake the left and right. I test some other data and realized it may be something wrong with the Tksufer installing.How can I fix it? Thanks, Huang. _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it i s addressed. If you believe this e-mail was sent to you in error and the e-ma il contains patient information, please contact the Partners Compliance HelpLi ne at http://www.partners.org/complianceline . If the e-mail was sent to you in e rror but does not contain patient information, please contact the sender and pro perly dispose of the e-mail.
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
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Bruce Fischl -
Rujing Zha -
Xiaojun.Huang