Hannah, are you trying to run fMRI data through the anatomical processing stream? That will certainly not work ...

doug

Riskin-Jones, Hannah wrote:

Hi,

I am attempting to run an fMRI data set through the freesurfer workflow and the skullstripping step seems to be delayed.

It has been stuck on the following command line for an inordinate amount of time.

First Search limited to translation only.

using real data threshold=28.0

Found translation: (-1.1, -8.0, -23.9): log p = -22300.7

Nine Parameter search. iteration 0 nscales = 0 ...

without an error message, I have no clues as to how to fix this problem. Any suggestions would be much appreciated!

Thank you so much,

Hannah

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