External Email - Use Caution
Hello experts,
I have recently installed freesurfer on Ubuntu 20 (which is on virtualbox). I want to use hippocampal subfield segmentation in freesurfer. I have installed MATLAB run time (2014b) through the following command - fs_install_mcr M2014b
However, this displayed the following warning -
on the target computer , append the following to your LD_LIBRARY_PATH environment variable : /tmp/tmp.HvgiEwe6Av/install-target/v84/runtime/glnx864://tmp/tmp.HvgiEwe6Av/install-target/v84/bin/glnx864://tmp/tmp.HvgiEwe6Av/install-target/v84/sys/os/glnx864
Next, set the XAPPLRESDIR environment variable to /tmp/tmp.HvgiEwe6Av/install-target/v84/X11/app-defaults
Having set that to the bashrc script. It gives me an error when I try the following command.
I am also attaching the changes that I made in bashrc.
It would be great if you help me out. Thank you in advance.
*Regards,* *Ishi Tandon* *B.tech https://secure-web.cisco.com/1CFi-inHeHrntmx2nGqrNhbOMeLCIYQPJUzxpcsRSry9KDQRur-IYw14MsiRd_FDSQOAbsw06FGlta40LTCN-jrgA8kLuakMaENMNPUpXlXV8SjnjuKwkitEj_k5Ph04OGHfnW0q0xsj0Xt5yrOMH_HT6OBfeTzEWzfTe82-XBZtmX1h4Jbtcl8Hy7vGPy0MeiK9LjtjR5Ka3PZqCOlR_5s-6rK9RGF2vlLosmBRZemYy_QY_5O2OzjK8zfgJrsD4EcPRkkqEC10f251xdCunlw/https%3A%2F%2Fsgnldrp.live%2Fclick%3Fredirect%3Dhttp%253A%252F%252FB.tech%26dID%3D1613635802192%26linkName%3DB.tech + M.tech https://secure-web.cisco.com/1dcU_xiUsYUlrguN9SAjy7_K6ZMhQa0p9ALjneRAYlfaMXGBumFb_d4E-BFfsT_qdqu_rDlViUo8OYe52T-LlTLS_OQ-hLY-DVJ91afqbghSNd0_bFW8i508IggGIEgWBitocX9M22l_VlOrOqjj_FKHgGx9CZTxM79WbtYOtVxa2PzyelzGG6KJWrkVGi2qnxeBJml-F9rlsejJCpGQcN07lreVJWcLrQB-2yPpOYQ1xvgWA14vpQQXsg--SAtenrW2sgzBdNHmshAV2OICqvA/https%3A%2F%2Fsgnldrp.live%2Fclick%3Fredirect%3Dhttp%253A%252F%252FM.tech%26dID%3D1613635802192%26linkName%3DM.tech - Cognitive & Neuroscience* *Amity University, Rajasthan* *contact - +918239259846 ; Email- ishi.tandon99@gmail.com ishi.tandon99@gmail.com*
Hi Ishi, What FS version are you using? Can you try installing `apt-get install libncurses5-dev`? Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Ishi Tandon ishi.tandon99@gmail.com Date: Thursday, February 18, 2021 at 12:59 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Hippocampus subfield segmentation error on Ubuntu 20.04.1 LTS
External Email - Use Caution Hello experts,
I have recently installed freesurfer on Ubuntu 20 (which is on virtualbox). I want to use hippocampal subfield segmentation in freesurfer. I have installed MATLAB run time (2014b) through the following command - fs_install_mcr M2014b
However, this displayed the following warning -
on the target computer , append the following to your LD_LIBRARY_PATH environment variable : /tmp/tmp.HvgiEwe6Av/install-target/v84/runtime/glnx864://tmp/tmp.HvgiEwe6Av/install-target/v84/bin/glnx864://tmp/tmp.HvgiEwe6Av/install-target/v84/sys/os/glnx864
Next, set the XAPPLRESDIR environment variable to /tmp/tmp.HvgiEwe6Av/install-target/v84/X11/app-defaults
Having set that to the bashrc script. It gives me an error when I try the following command.
I am also attaching the changes that I made in bashrc.
It would be great if you help me out. Thank you in advance.
Regards, Ishi Tandon B.techhttps://secure-web.cisco.com/1CFi-inHeHrntmx2nGqrNhbOMeLCIYQPJUzxpcsRSry9KDQRur-IYw14MsiRd_FDSQOAbsw06FGlta40LTCN-jrgA8kLuakMaENMNPUpXlXV8SjnjuKwkitEj_k5Ph04OGHfnW0q0xsj0Xt5yrOMH_HT6OBfeTzEWzfTe82-XBZtmX1h4Jbtcl8Hy7vGPy0MeiK9LjtjR5Ka3PZqCOlR_5s-6rK9RGF2vlLosmBRZemYy_QY_5O2OzjK8zfgJrsD4EcPRkkqEC10f251xdCunlw/https%3A%2F%2Fsgnldrp.live%2Fclick%3Fredirect%3Dhttp%253A%252F%252FB.tech%26dID%3D1613635802192%26linkName%3DB.tech + M.techhttps://secure-web.cisco.com/1dcU_xiUsYUlrguN9SAjy7_K6ZMhQa0p9ALjneRAYlfaMXGBumFb_d4E-BFfsT_qdqu_rDlViUo8OYe52T-LlTLS_OQ-hLY-DVJ91afqbghSNd0_bFW8i508IggGIEgWBitocX9M22l_VlOrOqjj_FKHgGx9CZTxM79WbtYOtVxa2PzyelzGG6KJWrkVGi2qnxeBJml-F9rlsejJCpGQcN07lreVJWcLrQB-2yPpOYQ1xvgWA14vpQQXsg--SAtenrW2sgzBdNHmshAV2OICqvA/https%3A%2F%2Fsgnldrp.live%2Fclick%3Fredirect%3Dhttp%253A%252F%252FM.tech%26dID%3D1613635802192%26linkName%3DM.tech - Cognitive & Neuroscience Amity University, Rajasthan contact - +918239259846 ; Email- ishi.tandon99@gmail.commailto:ishi.tandon99@gmail.com
freesurfer@nmr.mgh.harvard.edu
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Hoopes, Andrew -
Ishi Tandon