Hello!
I was told that Freesurfer should generate labels for functional areas of the brain (for example, visual zones - V1, V2, etc.) when doing reconstruction (recon-all -autorecon-all). But the the label/ directory in output contains only these files:
aparc.annot.a2009s.ctab aparc.annot.ctab lh.aparc.a2009s.annot lh.aparc.annot lh.cortex.label rh.aparc.a2009s.annot rh.aparc.annot rh.cortex.label
which contain only anatomical labels. What could be wrong?
If freesurfer does not generate those labels, is there some way to obtain them? (Obviously, I could create such labels by hand, but the result would be probably messy and imprecise.)
Best wishes, Platon Pronko
Hi Platon
we generate labels of Brodmann areas, including 17 and 18, which are V1 and V2. What version are you running? You might need a newer one Bruce
On Wed, 17 Oct 2012, ffmpeg ffmpeg wrote:
Hello!
I was told that Freesurfer should generate labels for functional areas of the brain (for example, visual zones - V1, V2, etc.) when doing reconstruction (recon-all -autorecon-all). But the the label/ directory in output contains only these files:
aparc.annot.a2009s.ctab aparc.annot.ctab lh.aparc.a2009s.annot lh.aparc.annot lh.cortex.label rh.aparc.a2009s.annot rh.aparc.annot rh.cortex.label
which contain only anatomical labels. What could be wrong?
If freesurfer does not generate those labels, is there some way to obtain them? (Obviously, I could create such labels by hand, but the result would be probably messy and imprecise.)
Best wishes, Platon Pronko
freesurfer@nmr.mgh.harvard.edu