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Dear FS experts,

I have removed the backslashes "" and now it works, so problem solved.

Thank you very much.

Regards,

Agurne

Neuropsychology of Severe Medical Conditions Research Team

Dpt of Methods and Experimental Psychology Faculty of Psychology and Education

University of Deusto

neurolab.deusto.es

Avda. de las Universidades 24,

48007, Bilbao (Spain)

Phone: +34 944139000 (ext. 3015)

El lun., 2 nov. 2020 a las 18:27, Agurne Sampedro Calvete (< a.sampedro@deusto.es>) escribió:

Dear Freesurfer Experts,

I am trying to perform a paired analysis in FreeSurfer following this tutorial https://secure-web.cisco.com/1GGOE7lAk9DEhVom372ksbhQpoUEm3yIVLX4YqDE8HfMpeO... and I have some problems when running the spatially smooth.

I ran the following command: mri_surf2surf --s fsaverage --hemi lh --fwhm 5\ --sval lh.paired-diff.thickness.mgh \ --tval lh.paired-diff.thickness.sm05.mgh

And I found this error: ERROR: lh.paired-diff.thickness.mgh unknown freesurfer

This file is in my subject directory, but when I see the file properties, in the "file type" box it says: unknown. I have read that other users have experienced the same error.

What can I do to solve this problem?

Thanks in advance.

Kind regards,

Agurne Sampedro

Neuropsychology of Severe Medical Conditions Research Team

Dpt of Methods and Experimental Psychology Faculty of Psychology and Education

University of Deusto

neurolab.deusto.es

Avda. de las Universidades 24,

48007, Bilbao (Spain)

Phone: +34 944139000 (ext. 3015)