Hi Antonella

we usually view the ?h.white and ?h.pial surfaces over the norm.mgz and the aseg.mgz and check them all for accuracy. If things are not where you think they should be, then you need to take one of the interventions documented on the wiki.

cheers Bruce

On Wed, 22 Jun 2011, Antonella Kis wrote:

Dear experts of the Freesurfer,

I am just learning freesurfer software and I was running recon-all for a subject in my directory. I can view the volumes and surfaces and I would be very grateful if you can list the next steps to be followed.

Do I need to make a data correction(check my data) after running the recon-all by running the autorecon-all or the autorecon1 and autorecon2, etc?

Any help will be greatly appreciate.

Thank you.

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