External Email - Use Caution
Hi
I downloaded the FreeSurfer tutorial data ( https://secure-web.cisco.com/1tDso4rjIlURcoFeNGyGUBBs1I7uczKauIIt12c78g81fRP...) and tried to test TRACULAR.
In the preprocessing step by running $trac-all -prep -c $TUTORIAL_DATA/diffusion_tutorial/dmrirc.tutorial, I got the following error messages.
ERROR: length of pathway list (lh.cst_AS rh.cst_AS lh.ilf_AS rh.ilf_AS lh.unc_AS rh.unc_AS fmajor_PP fminor_PP lh.atr_PP rh.atr_PP lh.cab_PP rh.cab_PP lh.ccg_PP rh.ccg_PP lh.slfp_PP rh.slfp_PP lh.slft_PP rh.slft_PP) and endpoint label ID list ERROR: () do not match
There may be something wrong with the demo dmrirc.tutorial configuration file, which is attached to the email. Please help me with how to fix the problem.
Thank you very much. Best regards Xin
Hi Xin - Please see the note in the blue box at the top of the tutorial pages. https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Tracula
Anastasia. ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Xin Qi xinqi2000@gmail.com Sent: Tuesday, June 14, 2022 11:54 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] about the error on running TRACULA using tutorial data
External Email - Use Caution
Hi
I downloaded the FreeSurfer tutorial data (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Datahttps://secure-web.cisco.com/1tDso4rjIlURcoFeNGyGUBBs1I7uczKauIIt12c78g81fRPOWsCdQGwqpysQpOHQv0zCfd4ugm0Hc5rEJwBAoS2uuC6V3tPvJ7pPBrzpiXz-2lMVqq14rv-USdZ-PY38Ec-9wLMQE4FbcZWz7V0k95amZWvMPhp0vrbfxmtXJcHkn5Mjb-k3Sz1Jxf0s30X9NTusTTZaWclbgEtt7s5bH2zg-EpAMnfoDGUaQmWvY4mAyVMHs24tMEasM9sRXWe5ba-3skUJHWqiO5MG45rjZztMV_x2snAgMxXwsKqdQUBBzZL1O_eFYN8s_Xx019DQUWK-LSqkGq0H8isbJ7hHqZA/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FData) and tried to test TRACULAR.
In the preprocessing step by running $trac-all -prep -c $TUTORIAL_DATA/diffusion_tutorial/dmrirc.tutorial, I got the following error messages.
ERROR: length of pathway list (lh.cst_AS rh.cst_AS lh.ilf_AS rh.ilf_AS lh.unc_AS rh.unc_AS fmajor_PP fminor_PP lh.atr_PP rh.atr_PP lh.cab_PP rh.cab_PP lh.ccg_PP rh.ccg_PP lh.slfp_PP rh.slfp_PP lh.slft_PP rh.slft_PP) and endpoint label ID list ERROR: () do not match
There may be something wrong with the demo dmrirc.tutorial configuration file, which is attached to the email. Please help me with how to fix the problem.
Thank you very much. Best regards Xin
External Email - Use Caution
Hi Anastasia:
I followed the tutorial notes and don't feel anything wrong with the dmriri.tutorial file, but still encounter the same error while running the preprocessing step.
Can you please check the reason?
Thank you very much. Best regards Xin
On Tue, Jun 14, 2022 at 11:54 AM Xin Qi xinqi2000@gmail.com wrote:
Hi
I downloaded the FreeSurfer tutorial data ( https://secure-web.cisco.com/1aZGcrEMvj1M7CWaw2qMqI7Uc6viIEqIR5R9mSfLbdkK5Nf...) and tried to test TRACULAR.
In the preprocessing step by running $trac-all -prep -c $TUTORIAL_DATA/diffusion_tutorial/dmrirc.tutorial, I got the following error messages.
ERROR: length of pathway list (lh.cst_AS rh.cst_AS lh.ilf_AS rh.ilf_AS lh.unc_AS rh.unc_AS fmajor_PP fminor_PP lh.atr_PP rh.atr_PP lh.cab_PP rh.cab_PP lh.ccg_PP rh.ccg_PP lh.slfp_PP rh.slfp_PP lh.slft_PP rh.slft_PP) and endpoint label ID list ERROR: () do not match
There may be something wrong with the demo dmrirc.tutorial configuration file, which is attached to the email. Please help me with how to fix the problem.
Thank you very much. Best regards Xin
The tutorial data are obsolete, from old versions of TRACULA (FreeSurfer versions 7.1 or older). ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Xin Qi xinqi2000@gmail.com Sent: Friday, June 17, 2022 5:46 AM To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] about the error on running TRACULA using tutorial data
External Email - Use Caution
Hi Anastasia:
I followed the tutorial notes and don't feel anything wrong with the dmriri.tutorial file, but still encounter the same error while running the preprocessing step.
Can you please check the reason?
Thank you very much. Best regards Xin
On Tue, Jun 14, 2022 at 11:54 AM Xin Qi <xinqi2000@gmail.commailto:xinqi2000@gmail.com> wrote: Hi
I downloaded the FreeSurfer tutorial data (MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Datahttps://secure-web.cisco.com/1aZGcrEMvj1M7CWaw2qMqI7Uc6viIEqIR5R9mSfLbdkK5NfQOsTeXLpTQzGmxSJ0BooezlCcStgDAizk87neVRwaZX8ebtmYtdaXrIyizheWiKAnH6kbX6xjrkQ-1IC_AYV1e_DMUjS55PVFk_yhB8ib8zkf9qeGLU3D_TKa6agRXTzvKD_eF0s37joCm4E8PSBQOmBkFj6RP-mW6biLq8rqg_VFbIvzv9ynFd19GwkpbumrxktS6jwtfyIHN-6ISy9QRNw5e6zcMBsSHQP5O2E18EJEyfmjAUJLi4j7SAvpKEvnl5wnG2wH8ZNeuxfFjwIZcHvNdr51e-AC9ZbGXaw/https%3A%2F%2Fsurfer.nmr.mgh.harvard.edu%2Ffswiki%2FFsTutorial%2FData) and tried to test TRACULAR.
In the preprocessing step by running $trac-all -prep -c $TUTORIAL_DATA/diffusion_tutorial/dmrirc.tutorial, I got the following error messages.
ERROR: length of pathway list (lh.cst_AS rh.cst_AS lh.ilf_AS rh.ilf_AS lh.unc_AS rh.unc_AS fmajor_PP fminor_PP lh.atr_PP rh.atr_PP lh.cab_PP rh.cab_PP lh.ccg_PP rh.ccg_PP lh.slfp_PP rh.slfp_PP lh.slft_PP rh.slft_PP) and endpoint label ID list ERROR: () do not match
There may be something wrong with the demo dmrirc.tutorial configuration file, which is attached to the email. Please help me with how to fix the problem.
Thank you very much. Best regards Xin
freesurfer@nmr.mgh.harvard.edu
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Xin Qi -
Yendiki, Anastasia