0.8

Zahra (Mona) Nasiriavanaki

Postdoctoral Research Fellow

Martinos Center for Biomedical Imaging

Massachusetts General Hospital

149 13th Street, 149-2615

Charlestown, MA, USA, 02129

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Wednesday, July 18, 2018 2:38:50 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] TPEF error

what is your TR?

On 07/18/2018 04:03 PM, Nasiriavanaki, Zahra wrote:

Hi

I am running the connectivity analysis (seed to whole brain), and when I run selxavg command, I get this error:

ERROR: time points in /autofs/space/oprah_001/users/jvm27/looming/all_subjects/liur_loom2_c_sdp/rest/025/TPEF.txt exceed nframes (488)

and the time points do not exceed the number of frames! It is happening for most of my subjects.

I am copy ing my tpef file for this run.

Could you please let me know how I should solve it?

Thanks

Mona

TPEF file for run 025:

6 36 50 61 62 74 106 204 245 246 295 297 298 311 312 321 322 323 324 325 330 352 370 378 383 384 385 387 396 397 398 424 431 439 441 442 477 478 479 480

*Zahra (Mona) Nasiriavanaki*

Postdoctoral Research Fellow

Martinos Center for Biomedical Imaging

Massachusetts General Hospital

149 13th Street, 149-2615

Charlestown, MA, USA, 02129

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

Right!

Thank you Doug

Zahra (Mona) Nasiriavanaki

Postdoctoral Research Fellow

Martinos Center for Biomedical Imaging

Massachusetts General Hospital

149 13th Street, 149-2615

Charlestown, MA, USA, 02129

________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu Sent: Wednesday, July 18, 2018 4:02:30 PM To: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] TPEF error

Each entry in the TPEF is the time in seconds of the frame you want to exclude. So, time=480 means frame 600 > your number of time points.

On 07/18/2018 04:42 PM, Nasiriavanaki, Zahra wrote:

0.8

*Zahra (Mona) Nasiriavanaki*

Postdoctoral Research Fellow

Martinos Center for Biomedical Imaging

Massachusetts General Hospital

149 13th Street, 149-2615

Charlestown, MA, USA, 02129

---

*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Douglas N. Greve dgreve@mgh.harvard.edu *Sent:* Wednesday, July 18, 2018 2:38:50 PM *To:* freesurfer@nmr.mgh.harvard.edu *Subject:* Re: [Freesurfer] TPEF error what is your TR?

On 07/18/2018 04:03 PM, Nasiriavanaki, Zahra wrote:

...

Hi

I am running the connectivity analysis (seed to whole brain), and when I run selxavg command, I get this error:

ERROR: time points in

/autofs/space/oprah_001/users/jvm27/looming/all_subjects/liur_loom2_c_sdp/rest/025/TPEF.txt

...

exceed nframes (488)

and the time points do not exceed the number of frames! It is happening for most of my subjects.

I am copy ing my tpef file for this run.

Could you please let me know how I should solve it?

Thanks

Mona

TPEF file for run 025:

6 36 50 61 62 74 106 204 245 246 295 297 298 311 312 321 322 323 324 325 330 352 370 378 383 384 385 387 396 397 398 424 431 439 441 442 477 478 479 480

*Zahra (Mona) Nasiriavanaki*

Postdoctoral Research Fellow

Martinos Center for Biomedical Imaging

Massachusetts General Hospital

149 13th Street, 149-2615

Charlestown, MA, USA, 02129

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer