If you save a segmentation from mri_volcluster (--ocn), then you can feed that into mri_segstats as the segmentation and it will create another summary file with the volumes of each cluster

doug

On 10/07/2013 10:12 AM, pfotiad@nmr.mgh.harvard.edu wrote:

Hi FS Community,

I have a binary mask and have used the mri_volcluster command to come up with different clusters and their volumes based on that binary mask. However, I was wondering if it would be possible to come up with the sum of the sizes (in mm3) of all the different clusters that come out of the sum file as well. I could do it by writing a script that reads the separate values from the summary file output of the mri_volcluster and then adding them, but I was wondering whether there was an easier way.

Thanks in advance, Panos _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer