Hi Tori,

we have some prototype tools for this, but haven't gotten to the point of being able to distribute them. Koen Van Leemput (ccd) also has some very nice tools for this I believe.

cheers Bruce On Thu, 10 Sep 2009, Victoria Williams wrote:

Hello,

Are there any freesurfer tools that allow labeling of wm hypointensities using imput from both T1 and T2 or lowb images?

Also, I was wondering if there was further documentation for the use of the mri_relabel_hypointensities command? I got the impression this script dealt somehow with cortical surface hypointensities and not wm hypointensities... is that correct? (PS: the -a <annotation> flag is returned as being unrecognized when running this script)

Thanks a bunch! Tori _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer