Hi all,
I’ve searched the edit tutorials for examples of the surface recon problem in the attached screenshots, but couldn’t find anything close. The problem is a jagged pial surface in only one plane - it seems to occur where gyri are very close together and doesn’t look like a problem in the other two planes.
Any recommendations on how to fix this? Or is it not something to worry about? Thanks in advance,
Erik Kastman
Hi Erik
if it is jagged in one plane then it is usually not a problem. What this means is that the surface is very close to parallel to that plane and so crosses into and out of it many times. This can cause a smooth surface to appear jagged when you slice it to visualize a 3D intersection of it.
cheers Bruce
On Thu, 3 Jul 2014, Erik Kastman wrote:
Hi all,
I’ve searched the edit tutorials for examples of the surface recon problem in the attached screenshots, but couldn’t find anything close. The problem is a jagged pial surface in only one plane - it seems to occur where gyri are very close together and doesn’t look like a problem in the other two planes.
Any recommendations on how to fix this? Or is it not something to worry about? Thanks in advance,
Erik Kastman
freesurfer@nmr.mgh.harvard.edu