hi michael in fact i gedited the recon-all.local-copy in <subjdir>/scripts and i noticed that the section "Cortical Parcellation 2 " contains references to a2005s and not to a2009s. is it a good idea to replace a2005s by a2009s in the text, then make a copy of the file and put it somewhere (my current directory for example) and then use it instead of the one given in <FREESURFER_HOME>/bin ?. then should i do the same modifications in the other parts of the text (for example the section "AParc2ASeg " and "Surface Anatomical Stats 2" ...) ?. i attached the recon-all.local-copy file.
thanks for all
freesurfer@nmr.mgh.harvard.edu