Hi all, I would ask you about freesurfer and retinotopy. I'm going to begin the analysis of some retinotopic data. I would ask if you know if the retinotopic analysis made by MGH freesurfer is qualitatively comparable to, or it's good as, that made by USCD freesurfer (old freesurfer). Thank you kindly in advance.
Francesca
what do you mean by "Old FreeSurfer"?
---------------------------------------------------------- Pedro Paulo de M. Oliveira Junior Diretor de Operações Netfilter & SpeedComm Telecom -- For mobile: http://www.netfilter.com.br/mobile
On Wed, Jun 9, 2010 at 17:44, francesca strappini < francescastrappini@gmail.com> wrote:
Hi all, I would ask you about freesurfer and retinotopy. I'm going to begin the analysis of some retinotopic data. I would ask if you know if the retinotopic analysis made by MGH freesurfer is qualitatively comparable to, or it's good as, that made by USCD freesurfer (old freesurfer). Thank you kindly in advance.
Francesca
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
old freesurfer, or csurf, is this: http://kamares.ucsd.edu/~sereno/csurf/tarballs/ made by Marty Sereno
What do you mean by the UCSD freesurfer? A long time ago I re-wrote a stream that Anders was using, and it gave similar results. I've just re-written it again and it will be released with version 5.
doug
On Wed, 9 Jun 2010, francesca strappini wrote:
Hi all, I would ask you about freesurfer and retinotopy. I'm going to begin the analysis of some retinotopic data. I would ask if you know if the retinotopic analysis made by MGH freesurfer is qualitatively comparable to, or it's good as, that made by USCD freesurfer (old freesurfer). Thank you kindly in advance.
Francesca
There is no version of freesurfer being distributed by Anders Dale at UCSD.
Marty Sereno does has a version of freesurfer branched from version 0.9. His includes a gui called csurf that can launch the retinotopy analyses (among other things) for a single subject. In general, it is somewhat dated. For example, it does not use mgh/mgz format, but rather a mixture of BRIK and bfloat/bshort. The cortical surface reconstruction stream also does not have many of the improvements made at MGH in the last several years (e.g. better topo fixing, aseg).
I've never used it, but an advantage of the MGH freesurfer retinotopy analysis stream is that it is documented, supported, and consistent with the latest cortical reconstruction stream distributed with MGH freesurfer.
Date: Thu, 10 Jun 2010 05:59:58 -0400 From: greve@nmr.mgh.harvard.edu To: francescastrappini@gmail.com CC: Freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] retinotopy: MGH vs UCSD
What do you mean by the UCSD freesurfer? A long time ago I re-wrote a stream that Anders was using, and it gave similar results. I've just re-written it again and it will be released with version 5.
doug
On Wed, 9 Jun 2010, francesca strappini wrote:
Hi all, I would ask you about freesurfer and retinotopy. I'm going to begin the analysis of some retinotopic data. I would ask if you know if the retinotopic analysis made by MGH freesurfer is qualitatively comparable to, or it's good as, that made by USCD freesurfer (old freesurfer). Thank you kindly in advance.
Francesca
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
_________________________________________________________________ Hotmail is redefining busy with tools for the New Busy. Get more from your inbox. http://www.windowslive.com/campaign/thenewbusy?ocid=PID28326::T:WLMTAGL:ON:W...
Hi Francesca, There's a packet that, i think, combines Freesurfer and VistaView. I think it is called VistaTools. You should check it out on David Heeger's website. ilana
On 9 June 2010 16:44, francesca strappini francescastrappini@gmail.comwrote:
Hi all, I would ask you about freesurfer and retinotopy. I'm going to begin the analysis of some retinotopic data. I would ask if you know if the retinotopic analysis made by MGH freesurfer is qualitatively comparable to, or it's good as, that made by USCD freesurfer (old freesurfer). Thank you kindly in advance.
Francesca
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
freesurfer@nmr.mgh.harvard.edu
-
Don Hagler -
Doug Greve -
francesca strappini -
Ilana Hairston -
Pedro Paulo de Magalhães Oliveira Junior