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Understood! Thank you for your help and stay safe.

On Tue, Aug 25, 2020 at 11:20 AM Douglas N. Greve dgreve@mgh.harvard.edu wrote:

Yes, do this for each subject. If you put the result in subject/stats then you can run asegstats2table with --statsfile=lh.aparc.pial_lgi.stats to get a table across all your subjects

On 8/24/2020 8:02 PM, Lab of Autism and Developmental Neuroscience, Lab of Autism and Developmental Neuroscience wrote:

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Dear FreeSurfer experts,

Hope this email finds you well. I was wondering if someone could please help clarify some components of the LGI pipeline. So the wiki tells us the following command needs to be done to obtain a stats file with the LGI info for one subject:

mri_segstats --annot my_subject_id lh aparc --i $SUBJECTS_DIR/my_subject_id/surf/lh.pial_lgi --sum lh.aparc.pial_lgi.stats

Should I perform this for each subject and then join them all into one file? I was hoping that you guys could direct me to some stats2table command that could do all of this automatically and thus be less time consuming. Thank you and stay safe

All the best, Alex

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