Hi Sinead,

sure, just give recon-all the .nii as input with -i instead of the dicoms and you should be all set.

cheers Bruce

On Wed, 16 Jan 2013, Sinead Kelly wrote:

Dear members,

I am new to Freesurfer and to cortical thickness analysis so I would like to ask a very basic question that I cannot find the answer to online - is it possible to conduct cortical thickness analysis using T1 files in *.nii format?