Hi everyone and happy new year!
I made a couple of manual edits to a wm.mgz file and then relaunched part of that subject's recon (-autorecon2-wm -autorecon3). After it finished, however, the wm.mgz had lost its manual edits - even though I had saved the edited version under the same name, in the right folder. Any ideas why it got overwritten? Comparing filesizes, the post-recon wm.mgz was different not just from my edited version, but also slightly different from the pre-edited wm.mgz!
I then redid my edits and repeated the procedure. Strangely, this time the wm.mgz edits were kept, however the redone surfaces still looked bad, as if the wm.mgz hadn't been edited at all.
I am running FS 5.3.0 from inside VirtualBox 4.2.12, on a Windows PC. Recon jobs are run remotely on a server running FSL software and output files are then copied over to my local PC.
Any help much appreciated, thanks in advance! Tudor
Hi Tudor Are you doing the editing with tkmedit? Cheers Bruce
On Jan 5, 2014, at 6:20 AM, Tudor Popescu tudor3@gmail.com wrote:
Hi everyone and happy new year!
I made a couple of manual edits to a wm.mgz file and then relaunched part of that subject's recon (-autorecon2-wm -autorecon3). After it finished, however, the wm.mgz had lost its manual edits - even though I had saved the edited version under the same name, in the right folder. Any ideas why it got overwritten? Comparing filesizes, the post-recon wm.mgz was different not just from my edited version, but also slightly different from the pre-edited wm.mgz!
I then redid my edits and repeated the procedure. Strangely, this time the wm.mgz edits were kept, however the redone surfaces still looked bad, as if the wm.mgz hadn't been edited at all.
I am running FS 5.3.0 from inside VirtualBox 4.2.12, on a Windows PC. Recon jobs are run remotely on a server running FSL software and output files are then copied over to my local PC.
Any help much appreciated, thanks in advance! Tudor _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Bruce Yes I am - sorry to not have mentioned Tudor
On 5 January 2014 17:00, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Tudor Are you doing the editing with tkmedit? Cheers Bruce
On Jan 5, 2014, at 6:20 AM, Tudor Popescu tudor3@gmail.com wrote:
Hi everyone and happy new year!
I made a couple of manual edits to a wm.mgz file and then relaunched
part of that subject's recon (-autorecon2-wm -autorecon3). After it finished, however, the wm.mgz had lost its manual edits - even though I had saved the edited version under the same name, in the right folder. Any ideas why it got overwritten? Comparing filesizes, the post-recon wm.mgz was different not just from my edited version, but also slightly different from the pre-edited wm.mgz!
I then redid my edits and repeated the procedure. Strangely, this time
the wm.mgz edits were kept, however the redone surfaces still looked bad, as if the wm.mgz hadn't been edited at all.
I am running FS 5.3.0 from inside VirtualBox 4.2.12, on a Windows PC.
Recon jobs are run remotely on a server running FSL software and output files are then copied over to my local PC.
Any help much appreciated, thanks in advance! Tudor _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Bruce Fischl -
Tudor Popescu