Hi Ping - It'll make it easier for us to replicate your memory error if you send us the data set where you get the error. Can you please zip up the dmri, dmri.bedpostX, and dlabel directories for this subject and upload them for me and Zeke?

https://gate.nmr.mgh.harvard.edu/filedrop2/

Thanks, a.y

On Wed, 27 Mar 2013, Ping-Hong Yeh wrote:

Hi Zeke,

That specific subject had v5.1 recon-all run by Leopard with FS v5.1 (another computer), but v5.2 trac-all run by Snow Leopard with FS v5.2 . If you scroll down the log file, you will see the "/Application/freesurfer", which is the v5.2 where it crashed.

Anyhow I have attached the log file of another subject run by FS 5.2, both recon-all and trac-all.

Thanks. ping

On Wed, Mar 27, 2013 at 4:00 PM, zkaufman@nmr.mgh.harvard.edu zkaufman@nmr.mgh.harvard.edu wrote:

...

Ping,

According to line 9 of the log file you sent to Anastasia, are running freesurfer version v5.1. Not version 5.2.

-Zeke

-------- Original Message -------- Subject: Re: [Freesurfer] memory allocation errors on Snow Leopard running dmri_train (fwd) Date: Wed, 27 Mar 2013 15:17:34 -0400 (EDT) From: Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu To: Zeke Kaufman zkaufman@nmr.mgh.harvard.edu

---------- Forwarded message ---------- Date: Wed, 27 Mar 2013 13:44:56 -0400 From: Ping-Hong Yeh pinghongyeh@gmail.com To: Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu Cc: freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] memory allocation errors on Snow Leopard running dmri_train

Hi Anastasia,

See the attached.

Thank you. ping

On Wed, Mar 27, 2013 at 1:38 PM, Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu wrote:

...

Hi Ping - Can you send us your entire trac-all.log? There's some info in there about your system and the freesurfer build you're using that we'll need to try to replicate the problem.

Thanks,

a.y

On Tue, 26 Mar 2013, Ping-Hong Yeh wrote:

...

Hi Anastasia,

It had the same issue before, but worked fine after installing the fixed dmri patch for Snow Leopard.

Thanks. ping

On Tue, Mar 26, 2013 at 5:09 PM, Anastasia Yendiki ayendiki@nmr.mgh.harvard.edu wrote:

...

Hi Ping - Are you running this on the same system where you were running the 5.1 snow leopard build without a problem?

a.y

On Tue, 26 Mar 2013, Ping-Hong Yeh wrote:

...

Hi FS users,

I've tested the newer Tracula FS 5.2 on Snow Leopard and ran into errors. The 5.2 recon-all of T1 was finished ok.

Here is the final part of log file.

#@# Priors Tue Mar 26 14:39:36 EDT 2013 /apps/freesurfer/bin/dmri_train --outdir /Volumes/Access_Point_Backup/freesurfer/NCNC2348/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.NCNC2348.61836.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask

/Volumes/Access_Point_Backup/freesurfer/NCNC2348/dlabel/mni/aparc+aseg_mask.nii.gz --fa /Volumes/Access_Point_Backup/freesurfer/NCNC2348/dmri/dtifit_FA.nii.gz --cptdir /Volumes/Access_Point_Backup/freesurfer/NCNC2348/dlabel/diff --reg

/Volumes/Access_Point_Backup/freesurfer/NCNC2348/dmri/xfms/mni2diff.flt.mat --ncpts 10 --trunc

cwd /Users/twbrkmp2 cmdline /apps/freesurfer/bin/dmri_train --outdir /Volumes/Access_Point_Backup/freesurfer/NCNC2348/dlabel/mni --out lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt --slist /tmp/subj33.NCNC2348.61836.txt --trk dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz --bmask

/Volumes/Access_Point_Backup/freesurfer/NCNC2348/dlabel/mni/aparc+aseg_mask.nii.gz --fa /Volumes/Access_Point_Backup/freesurfer/NCNC2348/dmri/dtifit_FA.nii.gz --cptdir /Volumes/Access_Point_Backup/freesurfer/NCNC2348/dlabel/diff --reg

/Volumes/Access_Point_Backup/freesurfer/NCNC2348/dmri/xfms/mni2diff.flt.mat --ncpts 10 --trunc sysname Darwin hostname twbrkmp2s-Mac-Pro-5.local machine x86_64 user twbrkmp2 Output directory: /Volumes/Access_Point_Backup/freesurfer/NCNC2348/dlabel/mni Output directory in test subject's space: /Volumes/Access_Point_Backup/freesurfer/NCNC2348/dlabel/diff Output base: lh.cst_AS_avg33_mni_flt rh.cst_AS_avg33_mni_flt lh.ilf_AS_avg33_mni_flt rh.ilf_AS_avg33_mni_flt lh.unc_AS_avg33_mni_flt rh.unc_AS_avg33_mni_flt fmajor_PP_avg33_mni_flt fminor_PP_avg33_mni_flt lh.atr_PP_avg33_mni_flt rh.atr_PP_avg33_mni_flt lh.cab_PP_avg33_mni_flt rh.cab_PP_avg33_mni_flt lh.ccg_PP_avg33_mni_flt rh.ccg_PP_avg33_mni_flt lh.slfp_PP_avg33_mni_flt rh.slfp_PP_avg33_mni_flt lh.slft_PP_avg33_mni_flt rh.slft_PP_avg33_mni_flt Training subject directory list: /private/tmp/subj33.NCNC2348.61836.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.flt.trk dlabel/mni/rh.cst_AS.flt.trk dlabel/mni/lh.ilf_AS.flt.trk dlabel/mni/rh.ilf_AS.flt.trk dlabel/mni/lh.unc_AS.flt.trk dlabel/mni/rh.unc_AS.flt.trk dlabel/mni/fmajor_PP.flt.trk dlabel/mni/fminor_PP.flt.trk dlabel/mni/lh.atr_PP.flt.trk dlabel/mni/rh.atr_PP.flt.trk dlabel/mni/lh.cab_PP.flt.trk dlabel/mni/rh.cab_PP.flt.trk dlabel/mni/lh.ccg_PP.flt.trk dlabel/mni/rh.ccg_PP.flt.trk dlabel/mni/lh.slfp_PP.flt.trk dlabel/mni/rh.slfp_PP.flt.trk dlabel/mni/lh.slft_PP.flt.trk dlabel/mni/rh.slft_PP.flt.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.flt.nii.gz dlabel/mni/rh.cst_AS_roi1.flt.nii.gz dlabel/mni/lh.ilf_AS_roi1.flt.nii.gz dlabel/mni/rh.ilf_AS_roi1.flt.nii.gz dlabel/mni/lh.unc_AS_roi1.flt.nii.gz dlabel/mni/rh.unc_AS_roi1.flt.nii.gz dlabel/mni/fmajor_PP_roi1.flt.nii.gz dlabel/mni/fminor_PP_roi1.flt.nii.gz dlabel/mni/lh.atr_PP_roi1.flt.nii.gz dlabel/mni/rh.atr_PP_roi1.flt.nii.gz dlabel/mni/lh.cab_PP_roi1.flt.nii.gz dlabel/mni/rh.cab_PP_roi1.flt.nii.gz dlabel/mni/lh.ccg_PP_roi1.flt.nii.gz dlabel/mni/rh.ccg_PP_roi1.flt.nii.gz dlabel/mni/lh.slfp_PP_roi1.flt.nii.gz dlabel/mni/rh.slfp_PP_roi1.flt.nii.gz dlabel/mni/lh.slft_PP_roi1.flt.nii.gz dlabel/mni/rh.slft_PP_roi1.flt.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.flt.nii.gz dlabel/mni/rh.cst_AS_roi2.flt.nii.gz dlabel/mni/lh.ilf_AS_roi2.flt.nii.gz dlabel/mni/rh.ilf_AS_roi2.flt.nii.gz dlabel/mni/lh.unc_AS_roi2.flt.nii.gz dlabel/mni/rh.unc_AS_roi2.flt.nii.gz dlabel/mni/fmajor_PP_roi2.flt.nii.gz dlabel/mni/fminor_PP_roi2.flt.nii.gz dlabel/mni/lh.atr_PP_roi2.flt.nii.gz dlabel/mni/rh.atr_PP_roi2.flt.nii.gz dlabel/mni/lh.cab_PP_roi2.flt.nii.gz dlabel/mni/rh.cab_PP_roi2.flt.nii.gz dlabel/mni/lh.ccg_PP_roi2.flt.nii.gz dlabel/mni/rh.ccg_PP_roi2.flt.nii.gz dlabel/mni/lh.slfp_PP_roi2.flt.nii.gz dlabel/mni/rh.slfp_PP_roi2.flt.nii.gz dlabel/mni/lh.slft_PP_roi2.flt.nii.gz dlabel/mni/rh.slft_PP_roi2.flt.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject:

/Volumes/Access_Point_Backup/freesurfer/NCNC2348/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /Volumes/Access_Point_Backup/freesurfer/NCNC2348/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject:

/Volumes/Access_Point_Backup/freesurfer/NCNC2348/dmri/xfms/mni2diff.flt.mat Number of control points for initial spline: 10 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from

/Volumes/Access_Point_Backup/freesurfer/NCNC2348/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /Volumes/Access_Point_Backup/freesurfer/NCNC2348/dmri/dtifit_FA.nii.gz Loading affine registration from

/Volumes/Access_Point_Backup/freesurfer/NCNC2348/dmri/xfms/mni2diff.flt.mat Loading streamline start ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.flt.trk Loading streamline start ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.flt.nii.gz Loading streamline end ROI from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.flt.nii.gz Loading streamlines from /apps/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.flt.trk INFO: Rejected 587 streamlines for straying off mask INFO: Rejected 77 streamlines for reversing direction INFO: Rejected 36 streamlines as length outliers INFO: Have 7732 total streamlines (min/mean/max length: 59/99/129) Loading segmentation from /apps/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /apps/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /apps/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz dmri_train(63678) malloc: *** mmap(size=159744) failed (error code=12) *** error: can't allocate region *** set a breakpoint in malloc_error_break to debug MRIalloc(218, 182, 182): could not allocate 158704 bytes for 138th slice

Cannot allocate memory Darwin twbrkmp2s-Mac-Pro-5.local 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun 7 16:32:41 PDT 2011; root:xnu-1504.15.3~1/RELEASE_X86_64 x86_64

trac-preproc exited with ERRORS at Tue Mar 26 14:40:16 EDT 2013

Any suggestions? Thanks.

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