I have about 100 subjects that have been run on 5.0 and I'd like to update them to 5.3. Is there a flag for recon-all that just runs the steps that would be affected by the version change? I seem to recall seeing a flag on the wiki but can't find it now. Maybe it was just for small patches?
Thanks.
no, sorry, but if you rerun recon-all on the existing subject dirs it will preserve the existing manual edits
cheers Bruce On Fri, 18 Oct 2013, Ruth Carper wrote:
I have about 100 subjects that have been run on 5.0 and I'd like to update them to 5.3. Is there a flag for recon-all that just runs the steps that would be affected by the version change? I seem to recall seeing a flag on the wiki but can't find it now. Maybe it was just for small patches?
Thanks.
freesurfer@nmr.mgh.harvard.edu