External Email - Use Caution
Dear Freesurfer experts,
Hello, I have started experimenting with Infant Freesurfer (version 4a14499), and we have run into a problem with very poor segmentation of the thalamus in one of our subjects.
Is there a way to incorporate manual edits, as in adult Freesurfer, to improve the segmentation? From this post: https://secure-web.cisco.com/1A3X8CGDC9HIB1-7GzN2d3Jhl_jxtbWw34-Ck5nrUNk5fVA..., it looks like the option to make manual edits was a feature in the works, but I am not sure if that is still the case.
I am guessing it would be inadvisable to re-run the infant data after making edits (to wm or aseg.presurf) in adult Freesurfer?
Thank you for your advice on this!
Sincerely,
Jee Won
Hi Jee Won,
Currently the infant stream does not allow for a rerun after manual edits. Editing the thalamus though would not impact the surface computations though.
Best, Lilla ________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Kang, Jee Won JeeWon.Kang@childrens.harvard.edu Sent: Thursday, February 16, 2023 8:38 AM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] Infant Freesurfer - manual edits
External Email - Use Caution
Dear Freesurfer experts,
Hello, I have started experimenting with Infant Freesurfer (version 4a14499), and we have run into a problem with very poor segmentation of the thalamus in one of our subjects.
Is there a way to incorporate manual edits, as in adult Freesurfer, to improve the segmentation? From this post: MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg65925.htmlhttps://secure-web.cisco.com/1A3X8CGDC9HIB1-7GzN2d3Jhl_jxtbWw34-Ck5nrUNk5fVAdyLCWHjN5ap2azPBqPsSc3sy6BDPgWQ8_o95xSmPjZyTJ12y62Dmj4XaI1Nn-8gKibNYWKcV_DDuhG3kA5N3kt5sbXihGLqugecs4PiV9Y7Cre0gljwzIcvqcS5bwIKeVXbNsel4OeFR8IavTMlxXf_oQSzI0OkbTJ1bDFhT0xS2IbjGMihkFMaVo5uYKbGpWbONFzi22uaAgX0oaE21gYcZiq0iiBQ9GXTbuXT-h9gCAabJNWTxzU5NuB3Qc0wqQodr2LVedoh_-igNPu_Q4TymJr1J7epwMSqyrS1A/https%3A%2F%2Fwww.mail-archive.com%2Ffreesurfer%40nmr.mgh.harvard.edu%2Fmsg65925.html, it looks like the option to make manual edits was a feature in the works, but I am not sure if that is still the case.
I am guessing it would be inadvisable to re-run the infant data after making edits (to wm or aseg.presurf) in adult Freesurfer?
Thank you for your advice on this!
Sincerely,
Jee Won
freesurfer@nmr.mgh.harvard.edu