And also see:

https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferWorkFlows

On Mon, 2006-03-13 at 14:17 -0500, Nick Schmansky wrote:

First test your installation using the subject that was included in the installation, named bert, by following these instructions:

https://surfer.nmr.mgh.harvard.edu/fswiki/TestingFreeSurfer

then follow the tutorial, found here:

https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial

In this tutorial, you won't need to download the tutorial data that accompanies it (unless you want to). Instead, just substitute the referenced names with your own subjects. The Morphometry and Reconstruction page has instructions for starting from dicoms (see section 3.2.1 Converting data to mgz format)

On Mon, 2006-03-13 at 14:08 -0500, Frederick Powell wrote:

...

Hello all, I am new to Freesurfer and would like to know what is the new command to perform the automated process for this software. I have created a subject directory and my files are dicom. If anyone could please give me as much information because I just started to use this and I am running X11 on my mac. Any help would be much appreciated. Thanks

-- Frederick G. Powell Boston University School of Medicine MD/PhD candidate 617-593-7183

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