Actually, never mind, I found a way through bet!

Panos

________________________________________ From: Fotiadis, Panagiotis Sent: Wednesday, July 24, 2013 10:08 AM To: freesurfer@nmr.mgh.harvard.edu Subject: Binary mask of the skull

Hi,

I was wondering whether there was a command (or a flag in a command such as mri_binarize) that can give me the binary mask of my subject's skull. I was thinking of creating a binary ask of the subject's brain and then one of the brain and the skull and subtracting them, but I was wondering whether there is a faster way.

Thanks, Panos