Hi > Domenico

I think the problem is that you have a forward slash in your subject name, as well as your SUBJECTS_DIR and FREESURFER_HOME. Did you perhaps but them inside double quotes or something? Usually the forward slash \ let's you extend command over multiple lines, but in this case it appears to have been included as part of the names themsevles. Or maybe you included two of them in a row (\)?

cheers Bruce

On Mon, 1 Aug 2016, Aquino Domenico wrote:

Dear Freesurfer team,

I'm trying to segment a pre-processed 3D PSIR volume.

Everything seems to work correctly, however at the end of recon-all something goes wrong.

The command "mri_label2label" returns the ERROR "No such file or directory\ mri_label2label: could not open label file...". Actually the file has not been created but I don't understand why. I checked the path for special characters, I checked the permissions and so on and it seems all ok.

Which could be the issue?

In attachment you'll find the recon-all.log file.

Thanks a lot,

Domenico

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Eng. Domenico Aquino Department of Neuroradiology IRCCS Foundation Neurological Institute "Carlo Besta" Via Celoria,11-20133 Milano Phone: +39 02 23942472 Fax +39 02 23942543

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