---------- Forwarded message ---------- From: Bruce Fischl fischl@nmr.mgh.harvard.edu Date: Fri, Jun 21, 2013 at 11:33 AM Subject: Re: [Freesurfer] missing surfaces To: Deirdre O Shea deirdreoshea84@gmail.com

Hi Deirdre

can you cc the list so that others can answer? Bruce

On Fri, 21 Jun 2013, Deirdre O Shea wrote:

Hi Doug and Bruce,

I have an error.logs file which shows only this message for one of the subjects..

mrisReadTriangleFile(/share/**users/doshea/WHICAP_PET/** W32714V2/3DT1/FreeSurfer/surf/**rh.pial): surface doesn't match /share/users/doshes/WHICAP_**PET/w32714v2/3dt1/

On Fri, Jun 21, 2013 at 9:57 AM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Deirdre

  can you send us the recon-all.log, or at least the last 100 lines of

it? cheers Bruce

  On Thu, 20 Jun 2013, Deirdre O Shea wrote:

        Dear FreeSurfers,

        I have been using FreeSurfer for editing for the past year now

and I have recently come across an issue that I have not seen before in a new dataset. The pial surfaces are missing in the right hemisphere following the first run of Freesurfer (before any edits). There are also some without white matter surfaces. However, not all my subjects have shown this and are just fine. Any suggestions on how i can fix this?

        Thanks,
        Deirdre

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/**compliancelinehttp://www.partners.org/complianceline. If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.