External Email - Use Caution
Dear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote:
Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Thank you for the information
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Dear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Hi Mustafa
what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and software cheers Bruce
On Tue, 26 Mar 2019, mustafa amin wrote:
External Email - Use CautionDear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Hi Bruce,
I mentioned and showed the MP-RAGE protocol along with 3D acquisition, sagittal and 1 mm isotropic. According to the radiologist and the operator it needs contrast that will be injected to the patient. Is it true? Please confirm and share some thoughts with me. Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 26 Mar 2019, at 21.24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and software cheers Bruce
On Tue, 26 Mar 2019, mustafa amin wrote:
External Email - Use CautionDear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
no, it does not need contrast (in fact contrast would make it more difficult for FreeSurfer to process the data)
cheers Bruce
On Wed, 27 Mar 2019, mustafa amin wrote:
External Email - Use CautionHi Bruce,
I mentioned and showed the MP-RAGE protocol along with 3D acquisition, sagittal and 1 mm isotropic. According to the radiologist and the operator it needs contrast that will be injected to the patient. Is it true? Please confirm and share some thoughts with me. Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 26 Mar 2019, at 21.24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and software cheers Bruce
On Tue, 26 Mar 2019, mustafa amin wrote:
External Email - Use CautionDear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Many thanks Bruce
Cheers!
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 27 Mar 2019, at 20.48, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
no, it does not need contrast (in fact contrast would make it more difficult for FreeSurfer to process the data)
cheers Bruce
On Wed, 27 Mar 2019, mustafa amin wrote:
External Email - Use CautionHi Bruce,
I mentioned and showed the MP-RAGE protocol along with 3D acquisition, sagittal and 1 mm isotropic. According to the radiologist and the operator it needs contrast that will be injected to the patient. Is it true? Please confirm and share some thoughts with me. Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 26 Mar 2019, at 21.24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and software cheers Bruce
On Tue, 26 Mar 2019, mustafa amin wrote:
External Email - Use CautionDear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
> External Email - Use Caution > > Dear member, > > I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation. > > Yours faithfully, > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
I am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in advance.
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 26 Mar 2019, at 21.24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and software cheers Bruce
On Tue, 26 Mar 2019, mustafa amin wrote:
External Email - Use CautionDear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
No you do not need IV contrast for running FreeSurfer. Rather it would be better if that was not done.
Matt.
On 3/27/19, 12:05 AM, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of mustafa amin" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of noki4gozo@yahoo.com> wrote:
External Email - Use CautionI am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in advance.
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 26 Mar 2019, at 21.24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and software cheers Bruce
On Tue, 26 Mar 2019, mustafa amin wrote:
External Email - Use CautionDear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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________________________________ The materials in this message are private and may contain Protected Healthcare Information or other information of a sensitive nature. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return mail.
External Email - Use Caution
Thank you very much Matt
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 27 Mar 2019, at 18.19, Glasser, Matthew glasserm@wustl.edu wrote:
External Email - Use CautionNo you do not need IV contrast for running FreeSurfer. Rather it would be better if that was not done.
Matt.
On 3/27/19, 12:05 AM, "freesurfer-bounces@nmr.mgh.harvard.edu on behalf of mustafa amin" <freesurfer-bounces@nmr.mgh.harvard.edu on behalf of noki4gozo@yahoo.com> wrote:
External Email - Use CautionI am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in advance.
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 26 Mar 2019, at 21.24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and software cheers Bruce
On Tue, 26 Mar 2019, mustafa amin wrote:
External Email - Use CautionDear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
> External Email - Use Caution > > Dear member, > > I am really new with this freesurfer, just need to ask 1 question. > Is there a special image protocol before running the MRI and then > upload it to freesurfer? Please share your thoughts. Thank you for > your kind attention and cooperation. > > Yours faithfully, > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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I see. Then they will have mprage sequences and you should be set On Wed, 27 Mar 2019, mustafa amin wrote:
External Email - Use CautionI am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in advance.
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 26 Mar 2019, at 21.24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and software cheers Bruce
On Tue, 26 Mar 2019, mustafa amin wrote:
External Email - Use CautionDear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Thank you Bruce I will tell them
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 27 Mar 2019, at 20.49, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
I see. Then they will have mprage sequences and you should be set On Wed, 27 Mar 2019, mustafa amin wrote:
External Email - Use CautionI am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in advance.
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 26 Mar 2019, at 21.24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and software cheers Bruce
On Tue, 26 Mar 2019, mustafa amin wrote:
External Email - Use CautionDear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
> External Email - Use Caution > > Dear member, > > I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation. > > Yours faithfully, > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Bruce,
The MRI operator gave me this picture she needs to know whether we are on the right track. Is this the correct protocol? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Department of Psychiatry Faculty of Medicine University of Sumatera Utara
On 27 Mar 2019, at 20.49, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
I see. Then they will have mprage sequences and you should be set On Wed, 27 Mar 2019, mustafa amin wrote:
External Email - Use CautionI am going to use Phillips Achieva 1.5 Tesla by the way. Thank you in advance.
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 26 Mar 2019, at 21.24, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
what type of scanner are you using? A normal mprage should be fine. Typically we acquire sagittaly as that is the shortest air-to-air direction. Make sure that the acquisition is 3D and around 1mm isotropic. We may have a protocol you can use depending on your scanner hardware and software cheers Bruce
On Tue, 26 Mar 2019, mustafa amin wrote:
External Email - Use CautionDear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
> External Email - Use Caution > > Dear member, > > I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation. > > Yours faithfully, > > Mustafa M. Amin > Consultant Psychiatrist in Biological Psychiatry > Department of Psychiatry > Faculty of Medicine > Universitas Sumatera Utara > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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hard to say without seeing all the parameters (which look like they were cropped out). It does seem correct. If you acquire one and send it to me I'll take a look. Probably best to send it directly to me, not on list though
cheers Bruce
On Thu, 28 Mar 2019, Mustafa Amin wrote:
External Email - Use CautionHi Bruce,
The MRI operator gave me this picture she needs to know whether we are on the right track. Is this the correct protocol? Thank you in advance.
Yours faithfully,
If you're scanner is on this list, then use the given protocol http://adni.loni.usc.edu/methods/documents/mri-protocols/
On 3/26/19 1:56 AM, mustafa amin wrote:
External Email - Use CautionDear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
External Email - Use Caution
Thank you Douglas. I have showed it to the radiologist and the operator. They said it needs contrast that will be injected to the patients. Is it true? Please confirm. Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 27 Mar 2019, at 05.12, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
If you're scanner is on this list, then use the given protocol http://adni.loni.usc.edu/methods/documents/mri-protocols/
On 3/26/19 1:56 AM, mustafa amin wrote: External Email - Use Caution
Dear Douglas,
I mentioned your suggestion i.e., multiecho mprage at about 1 mm, however the radiologist and operator of the MRI did not understand with the term. Can you explain it further please? We never done it before, here in Medan Indonesia. This is the first time we are going to do it. And, do you have suggestion for the MRI slice? Coronal, sagittal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 22 Feb 2019, at 00.10, Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edu wrote:
I highly recommend the multiecho mprage at about 1mm.
On 2/21/19 10:30 AM, Bruce Fischl wrote: Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Bruce
Thank you for letting me know about this, I’ll contact Andre if I need further explanation.
Cheers
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 21 Feb 2019, at 22.30, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Hi Bruce,
The MRI machine is from Phillips with 1.5 Tesla. How about the slice? Do I need to prepare sagittal, coronal or else? Thank you in advance.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
On 21 Feb 2019, at 22.30, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote:
Hi Mustafa
FreeSurfer should work fine with many image protocols. If you have the freedom to choose one, Andre van der Kouwe (ccd) can point you at the sequence he developed for Siemens. If you are using a different scanner give us the details and we can recommend something
cheers Bruce
On Thu, 21 Feb 2019, mustafa amin wrote:
External Email - Use CautionDear member,
I am really new with this freesurfer, just need to ask 1 question. Is there a special image protocol before running the MRI and then upload it to freesurfer? Please share your thoughts. Thank you for your kind attention and cooperation.
Yours faithfully,
Mustafa M. Amin Consultant Psychiatrist in Biological Psychiatry Department of Psychiatry Faculty of Medicine Universitas Sumatera Utara
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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Mustafa Amin