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Hi Freesurfer Developers,
I have one particular subject that terminates at the Fix Topology rh step (screenshot of recon-all-status.log file below) until the job walltime runs out. This problem happens solely for this subject when I submit recon-all just for this 1 subject and also when I do batch submission with multiple other subjects. In batch submission, the 99 other subjects successfully go through recon-all's entire processing stream. For each recon-all job, we allocate 8G. Is there a way to troubleshoot this problem?
[cid:fe218087-a1e3-4f1e-b1db-d3f5bf300cd2]
Here is other information about my operating system & the freesurfer version. Please let me know if you need anything else!
Freesurfer version: freesurfer-linux-centos8_x86_64-7.2.0-20210720-aa8f76b Platform: Rocky Linux release 8.8 (Green Obsidian) uname -a: Linux login01 4.18.0-513.24.1.el8_9.x86_64 #1 SMP Thu Apr 4 18:13:02 UTC 2024 x86_64 x86_64 x86_64 GNU/Linux Recon-all log: see attached
Sincerely, Yilei
freesurfer@nmr.mgh.harvard.edu