The problem is apparently that the Xh.aparc.a2009s.annot wasn't created.

Look in scripts/recon-all.log and make sure that the section "Cortical Parc 2" is present, and if it is, look for clues as to why the .annot wasn't created.

cheers, -MH

On Thu, 2011-12-29 at 16:03 +0000, LAOUCHEDI MAKHLOUF wrote:

hi everyone i run recon-all on 27 subjects using the 5.1 version, and i don't find aparc.a2009s+aseg.mgz neither lh.aparc.a2009s.annot so i can't use the command mri_aparc2aseg ( mri_aparc2aseg --s subject --a2009s). what must i do to have aparc.a2009s+aseg.mgz.

thanks

---

Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.