Dear all,
I am having trouble running tkregister2.
I get an error when I run tkregister2 on a subject after running autorecon1 (see below.) However, I also get an error when I run it on bert.
It seems tkregister2 is searching for COR files, but I am using mgz format. Am I not using the correct flags?
My subjects directory contains the talairach subject included in the dev release. Do I need to download talairach separately?
Here is the output for subject 2335 and bert:
[root@bwy-1-113mm talairach]$ tkregister2 --mgz --s 2335 --fstal
INFO: no target volume specified, assuming FreeSurfer orig volume.
target volume orig
movable volume (null)
reg file (null)
LoadVol 1
$Id: tkregister2.c,v 1.37 2005/08/29 21:38:09 greve Exp $
Diagnostic Level -1
talairach.xfm ---------------------
1.002 0.050 -0.017 -3.539;
-0.053 1.034 -0.076 -12.275;
0.014 0.081 1.091 -14.424;
0.000 0.000 0.000 1.000;
corRead(): can't open file /freesurfer/subjects/talairach/mri/orig/COR-.info
ERROR: could not read /freesurfer/subjects/talairach/mri/orig as 0
[root@bwy-1-113mm subjects]$ tkregister2 --mgz --s bert --fstal
INFO: no target volume specified, assuming FreeSurfer orig volume.
target volume orig
movable volume (null)
reg file (null)
LoadVol 1
$Id: tkregister2.c,v 1.37 2005/08/29 21:38:09 greve Exp $
Diagnostic Level -1
talairach.xfm ---------------------
1.154 -0.024 0.046 -5.813;
0.014 0.941 0.131 -21.893;
-0.048 -0.155 1.123 -0.730;
0.000 0.000 0.000 1.000;
WARNING: can't find the talairach xform '/autofs/space/minerva_001/users/nicks/subjects/bert/mri/transforms/talairach.xfm'
WARNING: transform is not loaded into mri
corRead(): can't open file /freesurfer/subjects/talairach/mri/orig/COR-.info
ERROR: could not read /freesurfer/subjects/talairach/mri/orig as 0
[root@bwy-1-113mm subjects]$
Any help is greatly appreciated.
Thanks,
Sasha
Sasha Wolosin
Research Assistant
Developmental Cognitive Neurology
Kennedy Krieger Institute
707 N. Broadway
Baltimore, MD 21205
ph: (443) 923-9270
wolosin(a)kennedykrieger.org
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