Hi,
I am trying to understand what happens when you run the recon-all
-qcache command
I noticed these three commands get run:
mris_preproc --s tester2 --hemi lh --meas thickness --target fsaverage
--out lh.thickness.fsaverage.mgh
mri_surf2surf --hemi lh --srcsubject tester2 --surfreg sphere.reg
--sval /lab1/FreeSurfer/4.0.5/ms-mni/testing/tester2/surf/lh.thickness
--sfmt curv --trgsubject fsaverage --tval
./tmp.mris_preproc.12176/tester2.1.mgh --noreshape
mri_concat ./tmp.mris_preproc.12176/tester2.1.mgh --o lh.thickness.fsaverage.mgh
My questions are:
1. Am I right to assume that the first command (mris_preproc) is just
a wrapper script that calls the 2nd and 3rd commands?
2a. In the case above, does the 3rd command (mri_concat) simply copy
the contents of tester2.1.mgh into lh.thickness.fsaverage.mgh.
2b. Is there a case when mri_concat will actually concat more than one
thing into lh.thickness.fsaverage.mgh?
thanks,
mishkin