Hi Freesurfers,
More questions about this analysis.
1) Referring to the documentation, we used the following command:
tksurfer fsaverage lh inflated -annot mc-z.abs.2.sig.ocn.annot -fthresh 2
-curv -gray
The documentation says we should see an image as shown in Figure 1
(attached). But what we see is Figure 2 (also attached). Can somebody
explain this?
2) When running the simulation does it matter what threshold we use? For
example, can we use a threshold of 2 or 3 (instead of 4 as shown in
documentation) when running mri_glmfit-sim? And do we have to use the same
threshold while displaying the clusters after?
Thanks for any help.
Devdutta