Freesurfer July 2011

freesurfer@nmr.mgh.harvard.edu

129 participants
195 discussions

bad skull strip - but doesn't affect surfaces
by Tetiana Dadakova 01 Jul '11

01 Jul '11

Dear list, For one of my subjects the skull strip is bad, but it doesn't (visually) affect neither surfaces nor segmentation (see the image in the attachment). In this case, do I have to edit the skull strip? Can it affect some calculation? Thank you, Tanja.

3 2

Rejoindre mon réseau sur LinkedIn
by Paula Diniz via LinkedIn 01 Jul '11

01 Jul '11

LinkedIn ------------ Paula Diniz souhaite se connecter à vous sur LinkedIn : ------------------------------------------ Je vous invite à faire partie de mon réseau professionnel en ligne sur le site LinkedIn. Accepter l'invitation de Paula Diniz http://www.linkedin.com/e/-wptfe6-gpl23w9p-41/vLfSn8bYH8_5DFBPLmfTK84Tj6M6D… Voir l'invitation de Paula Diniz http://www.linkedin.com/e/-wptfe6-gpl23w9p-41/vLfSn8bYH8_5DFBPLmfTK84Tj6M6D… ------------------------------------------ SAVEZ-VOUS que vous pouvez être le premier informé quand un membre de votre réseau change de poste ? Les "Nouvelles du réseau" sur votre page d'accueil LinkedIn vous informe des évolutions de carrière dans votre réseau. Soyez informé(e) en premier ! http://www.linkedin.com/ -- (c) 2011, LinkedIn Corporation

1 0

error in qdec design analyze
by Sophy Zhu 01 Jul '11

01 Jul '11

Hi Freesurfers, There existed an error "Error in Analyze: Couldn't open file /usr/local/freesurfer/subjects/PD1/surf/lh.thickness.fwhm10.fsaverage.mgh", when I clicked on the button "Analyze" in qdec design. I have only done "recon-all" with my data (PD-MPR group and Controled-MPR group). Did I miss one step before qdec analysis? Thanks

2 1

queue software and routine to remove dura from brain
by Knut J Bjuland 30 Jun '11

30 Jun '11

Hi What kind of queue software is used for Freesurfer to enable multiple instance across several CPU in mulit-core system? Is thesse software available in either Fedora or Ubuntu? I am working with 14 years old image which has enlarged ventricles. What is the recommend setting to remove non-brain tissue like dura from the MRI pictures? Cheers Knut J Bjuland

3 2

Trouble downloading freesurfer v4.4
by Rachel Steinhorn 30 Jun '11

30 Jun '11

My lab uses freesurfer v4.4, and I'd like to install it on my PC, but the download doesn't seem to be available from the Archives. When I click on any version of the archived file or try to save it to disk, I get a page saying "The connection was reset, The connection to the server was rest while the page was loading." Trying to download other releases, such as v5.0 and v4.0.5, produces the same message. The mirror offered for some releases gives me a blank page. Are the files available elsewhere, or will they be put back up at some point? The version I'm looking for is for Mac OS 10.6 (freesurfer-Darwin-leopard-i686-stable-pub-v4.4.0-full.dmg) Thank You, Rachel Steinhorn

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Freesurfer July 2011