Freesurfer February 2013

freesurfer@nmr.mgh.harvard.edu

136 participants
236 discussions

re error when making average subject
by Catherine Bois 14 Feb '13

14 Feb '13

Hi all, I was trying to create an average subject however received this error message. I temporarily removed that subject however I was wondering what a possible cause for this error is? Applying LTAtransformInterp (resample_type 1) writing to /sdata/images/projects/EHRS/2/Freesurfer_EHRS/READYFORANALYSIS/avgsubject/tmp/make_average_vol-tmp-10132/T1-EHRS_0764_1.mgh... mri_convert /sdata/images/projects/EHRS/2/Freesurfer_EHRS/READYFORANALYSIS/EHRS_0774_1/mri/T1.mgz /sdata/images/projects/EHRS/2/Freesurfer_EHRS/READYFORANALYSIS/avgsubject/tmp/make_average_vol-tmp-10132/T1-EHRS_0774_1.mgh --apply_transform /sdata/images/projects/EHRS/2/Freesurfer_EHRS/READYFORANALYSIS/EHRS_0774_1/mri/transforms/talairach.xfm -oc 0 0 Segmentation fault /home/orkney_01/cbois ERROR: mri_convert failed. ERROR: make_average_volume [cbois@poplar ~]$ Thank you very much for your help Cathy -- The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.

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issue about LME Matlab tools
by ting xu 13 Feb '13

13 Feb '13

Dear all, A few questions come to me when I used LME Matlab toolbox. Then Jorge kindly answered my questions and he also asked me to post our discussion to Freesurfer list so everyone knows what's going on here :) Cheers, Ting ------------------------------------------------------------------- *Subject: *Re: Re: issue about LME Matlab tools *Sent: *Tue, Dec 11, 2012 21:41:26 Hi Ting Please could you post this question to the Freesurfer list, so other people can benefit from this discussion? I'll answer you ASAP. Best -Jorge ------------------------------------------------------ *Subject: *Re: Re: issue about LME Matlab tools *Sent: *Wed, Dec 12, 2012 6:44:36 AM Hi Jorge, Thank you for your explanation in more details. I followed your suggestion, set the convergence epsilon to 10^-5. It truly improved. I am now running the whole brain data, estimations in several voxels were not converge after 50 iterations. Given that iterations takes more computational time, how many iterations do you recommend and what do you usually do if it still not converge? Thank you again:) Warmly regards, Ting ------------------------------------------------------ *Subject:* Re: issue about LME Matlab tools *Sent: *Wed, Dec 12, 2012 00:50:35 Hi Ting You needed more iterations to make the algorithm stop closer to the optimal values. Try: statsFS= lme_fit_FS(X,[1 2],Y,ni,10^-5); or the EM algorithm statsEM = lme_fit_EM(X,[1 2],Y,ni,10^-10); Neither of these algorithms can be guaranty to converge but I have found the FS algorithm to be the most robust and fast. For the mass-univariate setting we limited the number of iterations for the FS algorithm to only 20 due to computational time. Note that for only two repeated measures (as in your data) compound symmetry (a model with a single random effect for the intercept term) likely holds for the covariance matrix among the repeated measures. Although a likelihood ratio test here comparing the model with one random effects against the model with two random effects is barely significant it will not likely survive a multiple comparisons correction. You can not impose structure on D in our toolbox nor it is recommended for general longitudinal data. Let me know any doubt you might have. Best -Jorge ------------------------------------------------------ *Subject: *issue about LME Matlab tools *Sent: *Tue, Dec 11, 2012 14:47:14 Dear Dr. Sabuncu Your recent work "Statistical Analysis of Longitudinal Neuroimage Date with Linear Mixed Effects Models" provided us a great matlab toolbox to apply Mixed Model, especially for imaging data. Now, I am investigating the intraclass correlation based on this toolbox. Sometime I found the function "lme_fit_FS" could not get the accurate estimations. I think the problem may be relevant to the initial value from OLS method, in the case that the within-subject variability estimated from "lme_fit_init" is very close to zero. I attached an example. Y is test-retest imaging data for one voxel, X is design matrix including intercept, head_motion, age, gender. I set random effect for intercept and head_motion. I also attached result from SAS and the model is ok. stats = lme_fit_FS(X,[1,2],Y,ni); Here I'm wondering is there any way to fixed this in matlab? PS, though you have mentioned that no imposed structure on D (covariance matrix of random effect), I am curious if it is possible to define the structure of D in this toolbox. Thanks for your kind attention and look forward to your reply soon. Regards, Ting

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Re: [Freesurfer] ROI analysis and whitening in fsfast - Percent activity change
by Clark Fisher 13 Feb '13

13 Feb '13

Hi Doug, Thanks for the help, that seemed to worked great. I have a few follow up questions about how to process the resulting statistics. I'm still using v4.5 (can't switch to v5 yet), as I mentioned, and would like to get the % signal change for certain contrasts with error bars. Looking through the listserv, I see that the values in cespct.nii require correction by a scale factor in this version of fsfast. The most recent conversation I could find on this comes from 2010, when you told Thomas Janssens: Hi Thomas, you may have found a bug in my scale factor calculation. Can you compute the new scale factor as described below? BTW, these issues are fixed in version 5. cd bold/analysis x = load('X'); tirf = x.flac0.ev(3).tirf; Xirf = x.flac0.ev(3).Xirf; scalefOld = sum(Xirf .* repmat(tirf,[1 size(Xirf,2)])); TR = x.flac0.TR; dt = tirf(2)-tirf(1); scalefNew = sum(Xirf)*TR/dt; I can't find a follow up to this message. 2 questions. 1) The results with scalefNew look reasonable to me; do you still think that this is the proper way to adjust cespct.nii in v4.5? 2) If I want to put error bars on my % signal change, how do I scale the values in cesvarpct.nii? I would guess that if I wanted to put a 95% CI on my % signal change, it would be: (cespct * scalefNew) +/- ( sqrt(cesvarpct) * scalefNew * 1.96) and NOT (cespct * scalefNew) +/- ( sqrt(cesvarpct * scalefNew) * 1.96) Does this sound right, or am I misinterpreting what cesvarpct.nii contains? Thanks again, Clark Hi Clark, On 02/06/2013 05:55 PM, Clark Fisher wrote: > Hi everyone, > > In a previous discussion on this list > (http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg17681.html) > Pablo Polosecki was asking the best way to perform hypothesis testing > using functional data within an ROI. The final opinion was that it > was best to average all of the time courses in the ROI, and re-run the > analysis from scratch, so that all of the appropriate whitening, etc. > occurred. > > I was considering doing this, creating a small volume (say, 10 voxels > total) that had each voxel holding the average time course from one of > 10 ROIs. I would then set up and run a usual fsfast analysis using > these tiny volumes. I am using freesurfer 4.5. I have a few questions. > > 1) Is this reasonable? In general, it is reasonable. Though I'm curious what you are ultimately trying to do. Do you want p-values for each subject in each ROI? Or will you be combining the ROI beta values across subject in a group analysis? If so, then the whitening will probably make little, if any, difference, especially if this is a blocked design. In expectation, the whitening does not affect the beta values. > > 2) One area where I expect to run into problems is with the whitening. > If I set -acfbins to the total number of my dummy voxels, and > -acffwhm to 0, will this use the autocorrelation function of the > average timecourse within each individual ROI? Is that an appropriate > approach? How sensitive will this be to the number of actual voxels > averaged to get each ROI (for instance, would this bias me to finding > more significant results in ROIs containing fewer voxels?). That might work, but no promises! It is an appropriate approach. It might be sensitive to the number of voxels if the number is small (say, less than 100). > > 3) Are there other steps that depend upon the spatial arrangement of > voxels that I am forgetting, and will these steps choke on these small > volumes (or worse, fail in silent but pernicious ways). Nothing I can think of off the top of my head. doug > > Thanks for all of the help, > Clark > > > _______________________________________________ > Freesurfer mailing list > Freesurfer(a)nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...(a)nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html<http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer(a)nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

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(no subject)
by Rebecca Rada 13 Feb '13

13 Feb '13

Hello, We are trying to figure out how to expand the pial surface after FreeSurfer processing has occured. The processed brainmask.mgz has defined the gray matter as red, but the pial surface does not extend out to the red gray matter on a portion of the temporal lobe. Is there a way to expand the pial surface to include the gray matter that is currently not included in the final processed image? We have found information about how to minimize the pial surface if dura is included as gray matter, but we haven't found anything on how to increase the pial surface to include red gray matter voxels that were left out. Thank you so much, Rebecca

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R: Re: R: Re: R: Re: R: R: Re: R: trac-all -path error
by stdp82＠virgilio.it 13 Feb '13

13 Feb '13

Thank you very much Eugenio. Additionally I'm noting these file in dmri folder. Please, may you tell me if their location is correct. 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dif_brain_mask_slice_0171.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0172.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0173.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0174.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0175.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0176.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0177.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0178.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0179.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0180.nii.gz/home/stefano/Desktop/bedp/dmri/nodif_brain_mask_slice_0181.nii.gz ----Messaggio originale---- Da: iglesias(a)nmr.mgh.harvard.edu Data: 13-feb-2013 15.18 A: <stdp82(a)virgilio.it> Cc: <freesurfer(a)nmr.mgh.harvard.edu>, <ayendiki(a)nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] R: Re: R: Re: R: R: Re: R: trac-all -path error Hi Stefano, Question: https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2012-August/025298.ht… Answer: https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2012-August/025303.ht… Hope this helps! /Eugenio On Wed, 2013-02-13 at 08:27 +0100, stdp82(a)virgilio.it wrote: > Hi Anastasia, > > > I have run another subject with the same error. > After finish bedposts > Queuing post processing stage > [iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano% trac-all > -path -c $FREESURFER_HOME/dmrirc_single_subject5 > INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects/subject_prova > INFO: Diffusion root > is /Applications/freesurfer/subjects/subject_prova > Actual FREESURFER_HOME /Applications/freesurfer > trac-paths > -c /Applications/freesurfer/subjects/subject_prova/Con05/scripts/dmrirc.local -log /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.log -cmd /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.cmd > #------------------------------------- > /Applications/freesurfer/bin/trac-paths > #------------------------------------- > #@# Path reconstruction Wed Feb 13 08:20:51 CET 2013 > /Applications/freesurfer/bin/dmri_paths > --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/su bjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cp ts/priormni/seg14/initmni/regflt/lh.slft_PP! _avg33_m ni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/su bjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33 _mni_flt_end1_dil.nii.gz /Applications/free! surfer/s ubjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh. unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/f reesurfer/subjects/subject_prova/Con05/dlab! el/mni/r h.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prov a/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subject s/subject_prova/Con05/dlabel/diff/lh.slft_P! P_avg33_ mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni _flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Ap plications/freesurfer/subjects/subject_prov! a/Con05/ dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slf p_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg3 3_mni_flt_fsids /Applications/freesurfer/su! bjects/s ubject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_P P_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/ freesurfer/subjects/subject_prova/Con05/dla! bel/mni/ lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 > > > > > cwd /Applications/freesurfer/subjects/subject_prova > cmdline /Applications/freesurfer/bin/dmri_paths > --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/su bjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cp ts/priormni/seg14/initmni/regflt/lh.slft_PP! _avg33_m ni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/su bjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33 _mni_flt_end1_dil.nii.gz /Applications/free! surfer/s ubjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh. unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/f reesurfer/subjects/subject_prova/Con05/dlab! el/mni/r h.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prov a/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subject s/subject_prova/Con05/dlabel/diff/lh.slft_P! P_avg33_ mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni _flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Ap plications/freesurfer/subjects/subject_prov! a/Con05/ dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slf p_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg3 3_mni_flt_fsids /Applications/freesurfer/su! bjects/s ubject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_P P_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/ freesurfer/subjects/subject_prova/Con05/dla! bel/mni/ lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 > sysname Darwin > hostname iMac-di-Stefano.local > machine x86_64 > user Stefano > Output > directory: /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/ subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5 cpts/priormni/seg14/initmni/regflt/lh.slft_! PP_avg33 _mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt > DWIs: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz > Gradients: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs > B-values: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals > Mask: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > BEDPOST > directory: /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX > Max number of tracts per voxel: 2 > Tract volume fraction threshold: 0.05 > Initial control point > file: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33 _mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt > End ROI > 1: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/ Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz > End ROI > 2: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/ Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz > Neighbor aseg > prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior > Neighbor aseg label ID > list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesu rfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids > Local aseg > prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/frees urfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior > Local aseg label ID > list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subjec t_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids > Segmentation > map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz > Type of aseg prior: 0 > DWI-to-atlas affine > registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat > Number of burn-in samples: 200 > Number of post-burn-in samples: 5000 > Keep every: 5-th sample > Update proposal every: 0-th sample > Loading spline control points > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt > Loading spline mask > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > Creating output > directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt > Loading DWIs > from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz > Loading mask > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > Loading BEDPOST parameter samples > from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX > niiRead(): error opening > file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz > ERROR: Could not > read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz > Darwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu > Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64 > > > trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013 > > > [iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano% > > Thanks, > > > Stefano > > > > > ----Messaggio originale---- > Da: ayendiki(a)nmr.mgh.harvard.edu > Data: 13-feb-2013 0.43 > A: <stdp82(a)virgilio.it> > Ogg: Re: R: Re: R: [Freesurfer] R: Re: R: trac-all -path error > > > Bedpostx hasn't finished running. You have to wait for it to finish. > > On Wed, 13 Feb 2013, stdp82(a)virgilio.it wrote: > > > Yes, I clearly understand it. > > I have this error after -path step > > > > Loading mask from > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > > > > Loading BEDPOST parameter samples from > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX > > > > niiRead(): error opening file > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > > ERROR: Could not read > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > after prep and bedpostx I have these folder > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/mri/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri.bedpostX/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/scripts/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dpath/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dlabel/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/stats/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/label/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/rh.EC_average/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/lh.EC_average/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/fsaverage/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/touch/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/surf/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bem/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/src/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/tmp/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/trash/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvecs.txt > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvals.txt > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/data.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/MPRAGE.nii.gz > > > > > > particularly in dmri.bedpostx I have: > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_mni.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_orig.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvals > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvecs > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0000.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0001.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0002.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0003.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0004.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0005.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0006.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0007.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0008.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0009.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0010.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0011.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0012.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0013.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0014.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0015.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0016.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0017.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0018.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0019.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0020.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0021.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0022.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0023.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0024.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0025.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0026.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0027.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0028.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0029.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0030.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0031.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0032.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0033.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0034.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0035.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0036.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0037.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0038.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0039.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0040.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0041.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0042.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0043.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0044.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0045.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0046.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0047.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0048.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0049.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0050.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0051.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0052.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0053.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0054.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0055.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0056.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0057.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0058.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0059.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0060.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0061.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0062.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0063.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0064.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0065.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0066.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0067.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0068.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0069.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0070.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0071.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0072.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0073.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0074.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0075.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0076.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0077.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0078.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0079.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0080.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0081.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0082.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0083.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0084.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0085.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0086.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0087.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0088.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0089.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0090.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0091.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0092.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0093.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0094.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0095.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0096.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0097.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0098.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0099.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0100.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0101.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0102.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0103.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0104.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0105.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0106.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0107.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0108.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0109.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0110.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0111.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0112.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0113.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0114.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0115.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0116.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0117.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0118.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0119.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0120.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0121.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0122.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0123.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0124.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0125.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0126.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0127.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0128.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0129.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0130.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0131.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0132.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0133.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0134.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0135.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0136.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0137.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0138.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0139.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0140.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0141.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0142.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0143.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0144.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0145.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0146.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0147.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0148.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0149.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0150.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0151.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0152.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0153.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0154.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0155.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0156.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0157.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0158.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0159.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0160.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0161.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0162.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0163.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0164.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0165.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0166.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0167.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0168.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0169.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0170.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0171.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0172.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0173.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0174.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0175.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0176.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0177.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0178.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0179.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0180.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0181.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_FA.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L1.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L2.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L3.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_MD.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_MO.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_S0.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V1.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V2.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V3.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig_flip.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.mghdti.bvals > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.mghdti.bvecs > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_snr.txt > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi.ecclog > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain_anat.flt.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain_mni.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/mni/ > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0000.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0001.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0002.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0003.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0004.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0005.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0006.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0007.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0008.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0009.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0010.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0011.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0012.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0013.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0014.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0015.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0016.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0017.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0018.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0019.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0020.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0021.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0022.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0023.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0024.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0025.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0026.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0027.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0028.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0029.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0030.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0031.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0032.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0033.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0034.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0035.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0036.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0037.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0038.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0039.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0040.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0041.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0042.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0043.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0044.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0045.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0046.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0047.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0048.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0049.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0050.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0051.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0052.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0053.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0054.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0055.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0056.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0057.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0058.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0059.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0060.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0061.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0062.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0063.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0064.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0065.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0066.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0067.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0068.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0069.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0070.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0071.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0072.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0073.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0074.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0075.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0076.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0077.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0078.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0079.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0080.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0081.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0082.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0083.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0084.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0085.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0086.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0087.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0088.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0089.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0090.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0091.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0092.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0093.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0094.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0095.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0096.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0097.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0098.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0099.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0100.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0101.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0102.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0103.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0104.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0105.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0106.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0107.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0108.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0109.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0110.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0111.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0112.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0113.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0114.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0115.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0116.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0117.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0118.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0119.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0120.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0121.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0122.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0123.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0124.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0125.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0126.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0127.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0128.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0129.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0130.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0131.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0132.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0133.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0134.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0135.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0136.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0137.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0138.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0139.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0140.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0141.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0142.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0143.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0144.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0145.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0146.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0147.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0148.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0149.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0150.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0151.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0152.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0153.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0154.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0155.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0156.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0157.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0158.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0159.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0160.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0161.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0162.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0163.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0164.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0165.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0166.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0167.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0168.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0169.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0170.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0171.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0172.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0173.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0174.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0175.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0176.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0177.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0178.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0179.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0180.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0181.nii > > .gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask.nii.gz > > > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/xfms/ > > > Segmentation > map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz > Type of aseg prior: 0 > DWI-to-atlas affine > registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat > Number of burn-in samples: 200 > Number of post-burn-in samples: 5000 > Keep every: 5-th sample > Update proposal every: 0-th sample > Loading spline control points > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt > Loading spline mask > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > Creating output > directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt > Loading DWIs > from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz > Loading mask > from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > Loading BEDPOST parameter samples > from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX > niiRead(): error opening > file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz > ERROR: Could not > read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gz > Darwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu > Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64 > > > trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013 > > Thanks, > > > > > > Stefano > > > > > > > > ----Messaggio originale---- > > Da: ayendiki(a)nmr.mgh.harvard.edu > > Data: 13-feb-2013 0.06 > > A: <stdp82(a)virgilio.it> > > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > > Ogg: Re: R: [Freesurfer] R: Re: R: trac-all -path error > > > > > > Hi Stefano - The order of the 3 trac-all steps is not > inter-changeable. > > You need to run bedpostx *before* you can run the path > reconstruction. > > > > a.y > > > > On Wed, 13 Feb 2013, stdp82(a)virgilio.it wrote: > > > > > Thank you Anastasia. But I do not understand why I have the error > in trac-all -path. The configuration > > file > > > that I have attached is good? > > > Stefano > > > > > > ----Messaggio originale---- > > > Da: stdp82(a)virgilio.it > > > Data: 12-feb-2013 23.27 > > > A: <ayendiki(a)nmr.mgh.harvard.edu> > > > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > > > Ogg: [Freesurfer] R: Re: R: trac-all -path error > > > > > > Hi Anastasia, > > > thanks! I hope that is all ok in Boston. > > > > > > I'm attaching the configuration file that I'm using. > > > > > > I'd like ask you if/how I can also run the second step of trac-all > (bedpostx) using FSL on other pc? May I > > > directly run in FSL dmri folder? Do you think that I should rename > some files? > > > > > > An additional question. For some subjects (no for subject that I'm > running with the config file that I > > have > > > attached) I have 16 direction and b=0 is the last of these. Is the > nb0=16? > > > > > > Thank you very much. > > > > > > > > > Stefano > > > > > > > > > > > > ----Messaggio originale---- > > > Da: ayendiki(a)nmr.mgh.harvard.edu > > > Data: 12-feb-2013 17.45 > > > A: <stdp82(a)virgilio.it> > > > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > > > Ogg: Re: [Freesurfer] R: trac-all -path error > > > > > > > > > Hi Stefano - There is no need to attach the trac-all script, I am > quite > > > familiar with it. Perhaps you could attach the configuration file > that you > > > set up? > > > > > > Thanks, > > > a.y > > > > > > On Mon, 11 Feb 2013, stdp82(a)virgilio.it wrote: > > > > > > > I'm attaching my trac-all file for check.Thanks, > > > > > > > > Stefano > > > > > > > > ----Messaggio originale---- > > > > Da: stdp82(a)virgilio.it > > > > Data: 11-feb-2013 14.42 > > > > A: <freesurfer(a)nmr.mgh.harvard.edu> > > > > Cc: <ayendiki(a)nmr.mgh.harvard.edu> > > > > Ogg: [Freesurfer] trac-all -path error > > > > > > > > Hi list, > > > > I'm running trac-all -path -c $FREESURFER/dmrirc_single_subject > but I have this error: > > > > > > > > Loading mask from > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > > > > Loading BEDPOST parameter samples from > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX > > > > niiRead(): error opening file > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > > ERROR: Could not read > > > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > > > > > > > From http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22066.html > > > > I'm deducing that the error may be related trace-all upload. > > > > > > > > I have doing this upload but I visualize always the same error. > > > > > > > > I attached tract-all uploades file that live > in /Applications/freesurfer/bin. > > > > > > > > Please, could you check it? > > > > > > > > I have also other question. May I run the second step of > trac-all (bedpostx) using FSL on other pc? In > > > this > > > > way, could I directly run in FSL dmri folder? Do you think that > I should rename some files? > > > > > > > > Thanks, > > > > > > > > > > > > Stefano > > > > > > > > > > > > > > > >_______________________________________________ > > > Freesurfer mailing list > > > Freesurfer(a)nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > > The information in this e-mail is intended only for the person to > whom it is > > > addressed. If you believe this e-mail was sent to you in error and > the e-mail > > > contains patient information, please contact the Partners > Compliance HelpLine at > > > http://www.partners.org/complianceline . If the e-mail was sent to > you in error > > > but does not contain patient information, please contact the > sender and properly > > > dispose of the e-mail. > > > > > > > > > > > > > > > > > > > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer(a)nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- ------------------------------------------------------------------------------------- Juan Eugenio Iglesias, PhD http://www.jeiglesias.com iglesias(a)nmr.mgh.harvard.edu Athinoula A. Martinos Center for Biomedical Imaging Department of Radiology, MGH, Harvard Medical School 149 Thirteenth Street, Suite 2301 Charlestown, Massachusetts 2129 U.S.A. _______________________________________________ Freesurfer mailing list Freesurfer(a)nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer

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Re: [Freesurfer] A question regarding a "nii-read" error I get when running a script for FA values output
by Rotem Saar 13 Feb '13

13 Feb '13

Dear Douglas, Thank you very much for your help, It seems to work now. I got a table with all the FA values, for each segment, but I suspect a problem: I think that the values are too high (I set the threshold to 0.2-1), am I right ? I'm attaching the table I got, and to be specific, I'm very much interested in the Corpus-Colosseum values, which are high (not surprising) but when I wanted to validate with some other structures, like the "left putamen" I saw 0.53 which is to my opinion too high ? I would really appreciate if you can have a look at the table I attached here. Thanks ! Rotem 2013/2/12 <freesurfer-request(a)nmr.mgh.harvard.edu> > Send Freesurfer mailing list submissions to > freesurfer(a)nmr.mgh.harvard.edu > > To subscribe or unsubscribe via the World Wide Web, visit > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > or, via email, send a message with subject or body 'help' to > freesurfer-request(a)nmr.mgh.harvard.edu > > You can reach the person managing the list at > freesurfer-owner(a)nmr.mgh.harvard.edu > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Freesurfer digest..." > > > Today's Topics: > > 1. Re: LME matlab toolbox - smooth error (jorge luis) > 2. Re: mean cortical thickness of significant clusters in qdec > (Douglas N Greve) > 3. Re: A question regarding a "nii-read" error I get when > running a script for FA values output (Douglas N Greve) > 4. Re: Temporal lobes not included (Kristina Nalbandian) > 5. Re: Temporal lobes not included (Bruce Fischl) > 6. Re: Temporal lobes not included (Douglas N Greve) > 7. Re: Freesurfer 5.2 CentOS 4 aparcstats2table error > (Nick Schmansky) > 8. mc-sess Error (Daniel Cole) > 9. Re: mc-sess Error (Douglas N Greve) > 10. glmfit-sim trouble (Gabriel Gonzalez Escamilla) > 11. Re: Freesurfer 5.2 CentOS 4 aparcstats2table error > (Garikoitz Lerma-Usabiaga) > 12. average subject (Linn Mittlestein) > 13. preparing NHP data for whole brain analysis > (Caspar M. Schwiedrzik) > 14. Post-Doctoral position in brain imaging and computational > morphometry ? University of Geneva (Narly Golestani) > 15. error when using stats import in qdec (Catherine Bois) > 16. Fwd: error when using stats import in qdec (Catherine Bois) > 17. Re: Fwd: error when using stats import in qdec (Catherine Bois) > 18. Re: Fwd: error when using stats import in qdec (Nick Schmansky) > 19. Re: Fwd: error when using stats import in qdec (Nick Schmansky) > 20. trac-all problem (Jon Wieser) > 21. two sample t-test of paired differences (J?rg Pfannm?ller) > 22. Re: average subject (Bruce Fischl) > 23. Re: average subject (Linn Mittlestein) > 24. Re: average subject (Douglas N Greve) > 25. Basic skullstrip Inquiry (Gabriel Obregon) > 26. Re: two sample t-test of paired differences (Douglas N Greve) > 27. Parallelizing on a different kind of cluster (Susan Kuo) > 28. Re: mean cortical thickness of significant clusters in qdec > (Douglas N Greve) > 29. Re: trac-all -path error (Anastasia Yendiki) > 30. Re: R: trac-all -path error (Anastasia Yendiki) > 31. Re: preparing NHP data for whole brain analysis (Douglas N Greve) > 32. Re: trac-all problem (Anastasia Yendiki) > 33. Re: Parallelizing on a different kind of cluster > (Anastasia Yendiki) > 34. Re: Troubleshooting the preproc (Anastasia Yendiki) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Mon, 11 Feb 2013 16:57:09 +0000 (GMT) > From: jorge luis <jbernal0019(a)yahoo.es> > Subject: Re: [Freesurfer] LME matlab toolbox - smooth error > To: Yolanda Vives <yvives(a)pic.es>, "freesurfer(a)nmr.mgh.harvard.edu" > <freesurfer(a)nmr.mgh.harvard.edu> > Message-ID: > <1360601829.82122.YahooMailNeo(a)web172101.mail.ir2.yahoo.com> > Content-Type: text/plain; charset="iso-8859-1" > > > > Hi Yolanda > > This is one of a few scripts in LME that requires an extra Matlab toolbox > (maybe the only, besides the statistic toolbox). As it is documented in its > header you are require to have the curve fitting toolbox installed to run > it successfully. > > Best > -Jorge > > > > > > > >________________________________ > > De: Yolanda Vives <yvives(a)pic.es> > >Para: freesurfer(a)nmr.mgh.harvard.edu > >Enviado: Lunes 11 de febrero de 2013 6:14 > >Asunto: [Freesurfer] LME matlab toolbox - smooth error > > > >Dear all > > > >I am a new user of the LME matlab toolbox and I have an error when > >running lme_lowessPlot due to the smooth function. Do I need a > >particular matlab toolbox to run this function? I have not seen any > >smooth function in the LME toolbox. > > > >Error in ==> lme_lowessPlot at 49 > >? ? ybw = smooth(st,dat(ix),bw,'rlowess'); > > > >Error in ==> LME at 14 > >lme_lowessPlot(M(:,1),Y(:,1)+Y(:,2),0.70,M(:,2)); > > > >Thank you in advance, > >Yolanda > >_______________________________________________ > >Freesurfer mailing list > >Freesurfer(a)nmr.mgh.harvard.edu > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >The information in this e-mail is intended only for the person to whom it > is > >addressed. If you believe this e-mail was sent to you in error and the > e-mail > >contains patient information, please contact the Partners Compliance > HelpLine at > >http://www.partners.org/complianceline . If the e-mail was sent to you > in error > >but does not contain patient information, please contact the sender and > properly > >dispose of the e-mail. > > > > > > > > >

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R: Re: R: Re: R: R: Re: R: trac-all -path error
by stdp82＠virgilio.it 13 Feb '13

13 Feb '13

Hi Anastasia, I have run another subject with the same error.After finish bedpostsQueuing post processing stage[iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano% trac-all -path -c $FREESURFER_HOME/dmrirc_single_subject5INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects/subject_provaINFO: Diffusion root is /Applications/freesurfer/subjects/subject_provaActual FREESURFER_HOME /Applications/freesurfertrac-paths -c /Applications/freesurfer/subjects/subject_prova/Con05/scripts/dmrirc.local -log /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.log -cmd /Applications/freesurfer/subjects/subject_prova/Con05/scripts/trac-all.cmd#-------------------------------------/Applications/freesurfer/bin/trac-paths #-------------------------------------#@# Path reconstruction Wed Feb 13 08:20:51 CET 2013/Applications/freesurfer/bin/dmri_paths --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 cwd /Applications/freesurfer/subjects/subject_provacmdline /Applications/freesurfer/bin/dmri_paths --outdir /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_flt --dwi /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gz --grad /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecs --bval /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvals --mask /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gz --bpdir /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX --ntr 2 --fmin 0.05 --roi1 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gz --roi2 /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gz --reg /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.mat --init /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txt --nprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnids --lprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsids --seg /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gz --nb 200 --ns 5000 --nu 0 --nk 5 sysname Darwinhostname iMac-di-Stefano.localmachine x86_64user StefanoOutput directory: /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cst_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ilf_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.unc_AS_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fmajor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/fminor_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.atr_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.cab_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.ccg_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slfp_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.slft_PP_avg33_mni_flt /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/rh.slft_PP_avg33_mni_fltDWIs: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gzGradients: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvecsB-values: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/bvalsMask: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzBEDPOST directory: /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostXMax number of tracts per voxel: 2Tract volume fraction threshold: 0.05Initial control point file: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cst_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ilf_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.unc_AS_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fmajor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/fminor_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.atr_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.cab_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.ccg_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slfp_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.slft_PP_avg33_mni_flt_cpts_5.txt /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/rh.slft_PP_avg33_mni_flt_cpts_5.txtEnd ROI 1: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end1_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end1_dil.nii.gzEnd ROI 2: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_end2_dil.nii.gz /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_end2_dil.nii.gzNeighbor aseg prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnpriorNeighbor aseg label ID list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsnnids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsnnidsLocal aseg prior: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsprior /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fspriorLocal aseg label ID list: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cst_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ilf_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.unc_AS_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fmajor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/fminor_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.atr_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.cab_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.ccg_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slfp_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/lh.slft_PP_avg33_mni_flt_fsids /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/rh.slft_PP_avg33_mni_flt_fsidsSegmentation map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gzType of aseg prior: 0DWI-to-atlas affine registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.matNumber of burn-in samples: 200Number of post-burn-in samples: 5000Keep every: 5-th sampleUpdate proposal every: 0-th sampleLoading spline control points from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txtLoading spline mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzCreating output directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_fltLoading DWIs from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gzLoading mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzLoading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostXniiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzDarwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64 trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013 [iMac-di-Stefano:freesurfer/subjects/subject_prova] Stefano% Thanks, Stefano ----Messaggio originale---- Da: ayendiki(a)nmr.mgh.harvard.edu Data: 13-feb-2013 0.43 A: <stdp82(a)virgilio.it> Ogg: Re: R: Re: R: [Freesurfer] R: Re: R: trac-all -path error Bedpostx hasn't finished running. You have to wait for it to finish. On Wed, 13 Feb 2013, stdp82(a)virgilio.it wrote: > Yes, I clearly understand it. > I have this error after -path step > > > Loading mask from > > > /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > > > Loading BEDPOST parameter samples from > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX > > > niiRead(): error opening file > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > ERROR: Could not read > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > after prep and bedpostx I have these folder > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/mri/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri.bedpostX/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/scripts/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dpath/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dlabel/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/stats/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/label/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/rh.EC_average/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/lh.EC_average/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/fsaverage/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/touch/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/surf/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bem/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/src/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/tmp/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/trash/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvecs.txt > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/bvals.txt > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/data.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/MPRAGE.nii.gz > > > particularly in dmri.bedpostx I have: > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_mni.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat_orig.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/brain_anat.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvals > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/bvecs > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0000.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0001.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0002.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0003.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0004.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0005.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0006.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0007.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0008.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0009.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0010.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0011.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0012.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0013.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0014.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0015.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0016.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0017.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0018.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0019.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0020.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0021.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0022.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0023.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0024.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0025.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0026.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0027.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0028.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0029.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0030.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0031.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0032.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0033.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0034.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0035.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0036.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0037.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0038.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0039.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0040.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0041.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0042.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0043.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0044.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0045.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0046.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0047.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0048.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0049.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0050.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0051.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0052.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0053.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0054.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0055.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0056.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0057.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0058.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0059.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0060.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0061.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0062.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0063.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0064.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0065.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0066.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0067.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0068.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0069.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0070.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0071.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0072.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0073.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0074.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0075.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0076.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0077.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0078.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0079.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0080.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0081.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0082.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0083.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0084.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0085.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0086.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0087.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0088.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0089.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0090.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0091.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0092.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0093.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0094.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0095.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0096.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0097.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0098.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0099.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0100.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0101.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0102.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0103.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0104.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0105.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0106.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0107.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0108.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0109.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0110.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0111.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0112.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0113.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0114.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0115.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0116.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0117.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0118.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0119.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0120.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0121.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0122.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0123.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0124.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0125.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0126.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0127.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0128.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0129.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0130.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0131.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0132.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0133.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0134.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0135.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0136.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0137.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0138.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0139.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0140.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0141.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0142.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0143.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0144.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0145.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0146.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0147.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0148.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0149.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0150.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0151.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0152.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0153.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0154.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0155.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0156.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0157.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0158.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0159.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0160.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0161.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0162.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0163.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0164.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0165.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0166.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0167.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0168.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0169.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0170.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0171.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0172.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0173.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0174.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0175.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0176.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0177.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0178.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0179.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0180.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data_slice_0181.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/data.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_FA.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L1.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L2.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_L3.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_MD.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_MO.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_S0.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V1.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V2.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dtifit_V3.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig_flip.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.mghdti.bvals > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.mghdti.bvecs > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_orig.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi_snr.txt > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi.ecclog > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/dwi.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain_anat.flt.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain_mni.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb_brain.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/lowb.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/mni/ > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0000.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0001.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0002.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0003.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0004.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0005.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0006.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0007.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0008.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0009.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0010.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0011.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0012.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0013.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0014.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0015.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0016.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0017.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0018.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0019.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0020.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0021.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0022.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0023.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0024.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0025.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0026.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0027.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0028.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0029.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0030.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0031.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0032.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0033.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0034.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0035.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0036.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0037.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0038.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0039.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0040.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0041.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0042.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0043.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0044.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0045.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0046.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0047.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0048.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0049.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0050.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0051.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0052.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0053.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0054.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0055.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0056.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0057.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0058.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0059.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0060.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0061.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0062.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0063.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0064.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0065.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0066.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0067.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0068.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0069.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0070.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0071.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0072.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0073.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0074.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0075.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0076.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0077.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0078.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0079.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0080.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0081.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0082.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0083.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0084.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0085.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0086.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0087.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0088.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0089.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0090.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0091.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0092.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0093.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0094.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0095.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0096.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0097.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0098.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0099.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0100.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0101.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0102.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0103.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0104.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0105.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0106.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0107.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0108.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0109.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0110.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0111.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0112.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0113.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0114.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0115.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0116.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0117.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0118.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0119.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0120.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0121.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0122.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0123.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0124.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0125.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0126.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0127.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0128.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0129.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0130.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0131.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0132.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0133.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0134.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0135.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0136.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0137.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0138.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0139.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0140.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0141.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0142.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0143.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0144.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0145.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0146.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0147.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0148.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0149.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0150.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0151.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0152.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0153.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0154.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0155.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0156.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0157.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0158.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0159.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0160.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0161.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0162.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0163.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0164.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0165.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0166.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0167.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0168.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0169.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0170.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0171.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0172.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0173.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0174.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0175.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0176.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0177.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0178.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0179.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0180.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask_slice_0181.nii > .gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/nodif_brain_mask.nii.gz > file://localhost/Applications/freesurfer/subjects/subject_prova/Diff01/dmri/xfms/ > Segmentation map: /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/mni/aparc+aseg.nii.gzType of aseg prior: 0DWI-to-atlas affine registration: /Applications/freesurfer/subjects/subject_prova/Con05/dmri/xfms/diff2mni.flt.matNumber of burn-in samples: 200Number of post-burn-in samples: 5000Keep every: 5-th sampleUpdate proposal every: 0-th sampleLoading spline control points from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/lh.cst_AS_avg33_mni_flt_cpts_5.txtLoading spline mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzCreating output directory /Applications/freesurfer/subjects/subject_prova/Con05/dpath/5cpts/priormni/seg14/initmni/regflt/lh.cst_AS_avg33_mni_fltLoading DWIs from /Applications/freesurfer/subjects/subject_prova/Con05/dmri/dwi.nii.gzLoading mask from /Applications/freesurfer/subjects/subject_prova/Con05/dlabel/diff/aparc+aseg_mask.bbr.nii.gzLoading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostXniiRead(): error opening file /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzERROR: Could not read /Applications/freesurfer/subjects/subject_prova/Con05/dmri.bedpostX/merged_ph1samples.nii.gzDarwin iMac-di-Stefano.local 12.2.1 Darwin Kernel Version 12.2.1: Thu Oct 18 12:13:47 PDT 2012; root:xnu-2050.20.9~1/RELEASE_X86_64 x86_64 trac-paths exited with ERRORS at Wed Feb 13 08:20:52 CET 2013> Thanks, > > > Stefano > > > > ----Messaggio originale---- > Da: ayendiki(a)nmr.mgh.harvard.edu > Data: 13-feb-2013 0.06 > A: <stdp82(a)virgilio.it> > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > Ogg: Re: R: [Freesurfer] R: Re: R: trac-all -path error > > > Hi Stefano - The order of the 3 trac-all steps is not inter-changeable. > You need to run bedpostx *before* you can run the path reconstruction. > > a.y > > On Wed, 13 Feb 2013, stdp82(a)virgilio.it wrote: > > > Thank you Anastasia. But I do not understand why I have the error in trac-all -path. The configuration > file > > that I have attached is good? > > Stefano > > > > ----Messaggio originale---- > > Da: stdp82(a)virgilio.it > > Data: 12-feb-2013 23.27 > > A: <ayendiki(a)nmr.mgh.harvard.edu> > > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > > Ogg: [Freesurfer] R: Re: R: trac-all -path error > > > > Hi Anastasia, > > thanks! I hope that is all ok in Boston. > > > > I'm attaching the configuration file that I'm using. > > > > I'd like ask you if/how I can also run the second step of trac-all (bedpostx) using FSL on other pc? May I > > directly run in FSL dmri folder? Do you think that I should rename some files? > > > > An additional question. For some subjects (no for subject that I'm running with the config file that I > have > > attached) I have 16 direction and b=0 is the last of these. Is the nb0=16? > > > > Thank you very much. > > > > > > Stefano > > > > > > > > ----Messaggio originale---- > > Da: ayendiki(a)nmr.mgh.harvard.edu > > Data: 12-feb-2013 17.45 > > A: <stdp82(a)virgilio.it> > > Cc: <freesurfer(a)nmr.mgh.harvard.edu> > > Ogg: Re: [Freesurfer] R: trac-all -path error > > > > > > Hi Stefano - There is no need to attach the trac-all script, I am quite > > familiar with it. Perhaps you could attach the configuration file that you > > set up? > > > > Thanks, > > a.y > > > > On Mon, 11 Feb 2013, stdp82(a)virgilio.it wrote: > > > > > I'm attaching my trac-all file for check.Thanks, > > > > > > Stefano > > > > > > ----Messaggio originale---- > > > Da: stdp82(a)virgilio.it > > > Data: 11-feb-2013 14.42 > > > A: <freesurfer(a)nmr.mgh.harvard.edu> > > > Cc: <ayendiki(a)nmr.mgh.harvard.edu> > > > Ogg: [Freesurfer] trac-all -path error > > > > > > Hi list, > > > I'm running trac-all -path -c $FREESURFER/dmrirc_single_subject but I have this error: > > > > > > Loading mask from > > > /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > > > Loading BEDPOST parameter samples from > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX > > > niiRead(): error opening file > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > ERROR: Could not read > > > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > > > > > From http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22066.html > > > I'm deducing that the error may be related trace-all upload. > > > > > > I have doing this upload but I visualize always the same error. > > > > > > I attached tract-all uploades file that live in /Applications/freesurfer/bin. > > > > > > Please, could you check it? > > > > > > I have also other question. May I run the second step of trac-all (bedpostx) using FSL on other pc? In > > this > > > way, could I directly run in FSL dmri folder? Do you think that I should rename some files? > > > > > > Thanks, > > > > > > > > > Stefano > > > > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer(a)nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom it is > > addressed. If you believe this e-mail was sent to you in error and the e-mail > > contains patient information, please contact the Partners Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you in error > > but does not contain patient information, please contact the sender and properly > > dispose of the e-mail. > > > > > > > > > > > > > > >

2 1

preparing NHP data for whole brain analysis
by Caspar M. Schwiedrzik 12 Feb '13

12 Feb '13

Dear Freesurfer experts, I am trying to prepare some NHP functional data for a whole brain group analysis, and I was wondering which sequence of steps you would recommend, given that the data cannot be processed with recon-all. I have surfaces from 4 subjects, but one subject for which I do not have an anatomy of sufficient quality and won't be able to obtain one. I would also like to align the data to the 112RM atlas by Mclaren et al. I was thinking that I could probably align the functional data per subject to the atlas, and then use this registration with func2sph-sess to align all subjects for the group analysis (again to the atlas). Does that make sense, given that I have only four out of five individual surfaces? A second question is when to smooth the data. I assume that it makes most sense to smooth it after it has been transformed into surface space. Would that be sphsmooth-sess? Finally, when doing the analysis, I would use isxavg-re-sess or isxavg-fe- sess, correct? I am using Freesurfer v5.1. Thank you very much for your advice, Caspar

3 7

matrix design to homogeneity of slopes designs
by jm 12 Feb '13

12 Feb '13

Hi fs experts, I need to execute *mri_glmfit* with -X option to probe interactions between Diagnosis and Age, Statistic Software help suggest: The*homogeneity of slopes designs* can be used to test whether the continuous and categorical predictors interact in influencing responses, and thus, whether the traditional ANCOVA design or the separate slope <file:///textbook/general-linear-models/#between_subject> design is appropriate for modeling the effects of the predictor. for 2 groups thickness = b_0 + b_1 X_1 + b_2 X_2 + b_3 * Age + b4 X1*Age + b5 x2*Age the Matrix Design Xm _corresponding 1 1 0 56 56 0 1 1 0 67 67 0 1 1 0 67 67 0 1 1 0 78 78 0 1 1 0 67 67 0 1 1 0 87 87 0 1 0 1 67 0 67 1 0 1 66 0 66 1 0 1 65 0 65 1 0 1 87 0 87 1 0 1 45 0 45 1 0 1 77 0 77 In matrix design generated by freesurfer _*file Xg.dat*_ for both DODS and DOSS the first column don't appears. Constant term "is not explicitly considered" my question is: is correct to use *mri_glmfit* with -X Xm as above specified ? or I need to eliminate the first column? 1 0 56 56 0 1 0 67 67 0 1 0 67 67 0 1 0 78 78 0 1 0 67 67 0 1 0 87 87 0 0 1 67 0 67 0 1 66 0 66 0 1 65 0 65 0 1 87 0 87 0 1 45 0 45 0 1 77 0 77 thanks!!

2 1

R: R: Re: R: trac-all -path error
by stdp82＠virgilio.it 12 Feb '13

12 Feb '13

Thank you Anastasia. But I do not understand why I have the error in trac-all -path. The configuration file that I have attached is good? Stefano ----Messaggio originale---- Da: stdp82(a)virgilio.it Data: 12-feb-2013 23.27 A: <ayendiki(a)nmr.mgh.harvard.edu> Cc: <freesurfer(a)nmr.mgh.harvard.edu> Ogg: [Freesurfer] R: Re: R: trac-all -path error Hi Anastasia, thanks! I hope that is all ok in Boston. I'm attaching the configuration file that I'm using. I'd like ask you if/how I can also run the second step of trac-all (bedpostx) using FSL on other pc? May I directly run in FSL dmri folder? Do you think that I should rename some files? An additional question. For some subjects (no for subject that I'm running with the config file that I have attached) I have 16 direction and b=0 is the last of these. Is the nb0=16? Thank you very much. Stefano ----Messaggio originale---- Da: ayendiki(a)nmr.mgh.harvard.edu Data: 12-feb-2013 17.45 A: <stdp82(a)virgilio.it> Cc: <freesurfer(a)nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] R: trac-all -path error Hi Stefano - There is no need to attach the trac-all script, I am quite familiar with it. Perhaps you could attach the configuration file that you set up? Thanks, a.y On Mon, 11 Feb 2013, stdp82(a)virgilio.it wrote: > I'm attaching my trac-all file for check.Thanks, > > Stefano > > ----Messaggio originale---- > Da: stdp82(a)virgilio.it > Data: 11-feb-2013 14.42 > A: <freesurfer(a)nmr.mgh.harvard.edu> > Cc: <ayendiki(a)nmr.mgh.harvard.edu> > Ogg: [Freesurfer] trac-all -path error > > Hi list, > I'm running trac-all -path -c $FREESURFER/dmrirc_single_subject but I have this error: > > Loading mask from > /Applications/freesurfer/subjects/subject_prova/Con02/dlabel/diff/aparc+aseg_mask.bbr.nii.gz > Loading BEDPOST parameter samples from /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX > niiRead(): error opening file > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > ERROR: Could not read > /Applications/freesurfer/subjects/subject_prova/Con02/dmri.bedpostX/merged_ph1samples.nii.gz > > From http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg22066.html > I'm deducing that the error may be related trace-all upload. > > I have doing this upload but I visualize always the same error. > > I attached tract-all uploades file that live in /Applications/freesurfer/bin. > > Please, could you check it? > > I have also other question. May I run the second step of trac-all (bedpostx) using FSL on other pc? In this > way, could I directly run in FSL dmri folder? Do you think that I should rename some files? > > Thanks, > > > Stefano > > > >_______________________________________________ Freesurfer mailing list Freesurfer(a)nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.

2 1

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Freesurfer February 2013