Freesurfer July 2016

freesurfer@nmr.mgh.harvard.edu

143 participants
252 discussions

significance overlay in freeview
by Caroline Beelen 29 Jul '16

29 Jul '16

Dear FS team, Apologies in advance for perhaps again a rather basic question. I attempted to load the aparc overlay in freeview by using the written command from the group analysis page, however it failed to load correctly. I used the following command: freeview -f fsaverage/surf/lh.inflated:annot=aparc.annot:annot_outline=1:overlay=roi.lh.area.dyslect_basic.glmdir/dyslect/sig.mgh:overlay_threshold=4,5 -viewport 3d ? roi.lh.area.dyslect_basic.glmdir is the file obtained from the GLM-analysis and dyslect is the contrast folder within this file (main effect of dyslexia), containing a sig.mgh file (all seems fine) Unfortunately, I got an error that it does not recognize "overlay_treshold=4,5". I used freeview -h and tried certain commands alike, but they didn't work. When leaving out this part, I got another error that it failed to recognize "annot_outline=1". Again, leaving this out too, freeview loads itself and the DK-regions become visible. However, nothing else seems to get activated, and even not when putting "configure overlay" (which is set to sig.mgh) to 1.3 as minimum and 3 as maximum. So basically nothing happens. When looking at the command line it says that it implemented the colortable of DK-atlas (even twice), but it tells me nothing else. Also, after closing and reloading Freeview by using the similar command and then clicking on "configure overlay" the screen sometimes gets stuck, giving me the impression that something must be wrong with the command. Could you please help me out and provide me the right command-line for loading the overlay of the significance map of "roi.lh.area.dyslect_basic.glmdir/dyslect"? Thanks in advance! Kind regards, Caroline

2 1

28 Jul '16

The 2016 HCP Course: “Exploring the Human Connectome” <http://humanconnectome.org/courses/2016/exploring-the-human-connectome.php> starts in one month: August 28-September 1 in Boston! There are still some open slots, but we encourage you to Register <https://www.humanconnectome.org/courses/course-registration.php> today! The HCP Course is the best place to learn directly from HCP investigators and to explore HCP data and methods. This year's course will provide hands-on experience in working with the new, multi-modal human cortical parcellation (Glasser et al., Nature, July 20, http://www.ncbi.nlm.nih.gov/pubmed/27437579) and with the “HCP-Style” paradigm for data acquisition, analysis, and sharing (Glasser et al., Nature Neuroscience, in press). The 2016 HCP Course curriculum (see the full Course Schedule <https://www.humanconnectome.org/courses/2016/exploring-the-human-connectome…>) includes over *20 Lectures and 15 Practicals* and will be presented by 19 HCP investigators and staff <https://www.humanconnectome.org/courses/2016/exploring-the-human-connectome…> and and will be held over *five full days: August 28-September 1 (Sunday-Thursday) *at the Joseph B. Martin Conference Center at Harvard Medical School <http://www.theconfcenter.hms.harvard.edu/>, in Boston, Massachusetts, USA. If you have any questions, please contact us at hcpcourse(a)humanconnectome.org Hope to see you in Boston! Best, 2016 HCP Course Staff Jennifer Elam, Ph.D. Scientific Outreach, Human Connectome Project Washington University School of Medicine Department of Neuroscience, Box 8108 660 South Euclid Avenue St. Louis, MO 63110 314-362-9387 elam(a)wustl.edu www.humanconnectome.org

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question about mask coordinates
by Dorsa Haji Ghaffari 28 Jul '16

28 Jul '16

Hi all, I have done segmentation with Freesurfer but when I create a mask for the left thalamus and import it to CAD software it doesn't seem to be at the right coordinates. This may be due to the change in the mask volume(256x256x256) from the original MRI volume(512x512x288). I did re-slice the mask to get the original volume but it gives me an additional piece of cube at the bottom of the image. Does anyone know how to get the authentic coordinates for the mask? Thank you Dorsa

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Re: [Freesurfer] FreeSurfer 6.0
by elisabetta_delre＠hms.harvard.edu 28 Jul '16

28 Jul '16

> > Dear FreeSurfer team, > we are trying to find a downloadable version of FS6.0 to use on our data. > We can not find it on the web. > Could you help us with that? > Thank you, > best regards, > Elisabetta > > -- > *Elisabetta C. del Re, Ph.D.* > > *Instructor,* > *Department of Psychiatry* > *Harvard Medical School* > *phone 617 9675569 <617%209675569>* > *mail elisabetta_delre(a)hms.harvard.edu <elisabetta_delre(a)hms.harvard.edu>* > -- *Elisabetta C. del Re, Ph.D.* *Instructor,* *Department of Psychiatry* *Harvard Medical School* *phone 617 9675569* *mail elisabetta_delre(a)hms.harvard.edu <elisabetta_delre(a)hms.harvard.edu>*

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V6.0 Hippocampal subfield segmentation
by Zhuang, Xiaowei 28 Jul '16

28 Jul '16

Hi everyone, I am running the new hippocampal subfield segmentation with a V6.0 beta version released last year on 20150724. There is only 1 subject (out of about 40 total) exit with an ERROR during segmentation with T1 input. All others subjects ran through the hippocampal segmentation and gives me reasonable results. And the same T1 image ran through the V5.3 old hippocampal segmentation so I believe there is nothing wrong with image itself. I am wondering is this a bug in the beta version of V6.0 I am having? And I have attached the two ERROR log files. Any response will be appreciated. Thanks, Xiaowei. [Cleveland Clinic logo] Xiaowei Zhuang | Research Engineer | Lou Ruvo Center for Brain Health Cleveland Clinic | 888 W Bonneville Ave. | Las Vegas, NV 89106 | (702) 685-6051 =================================== Please consider the environment before printing this e-mail Cleveland Clinic is ranked as one of the top hospitals in America by U.S.News & World Report (2015). Visit us online at http://www.clevelandclinic.org for a complete listing of our services, staff and locations. Confidentiality Note: This message is intended for use only by the individual or entity to which it is addressed and may contain information that is privileged, confidential, and exempt from disclosure under applicable law. If the reader of this message is not the intended recipient or the employee or agent responsible for delivering the message to the intended recipient, you are hereby notified that any dissemination, distribution or copying of this communication is strictly prohibited. If you have received this communication in error, please contact the sender immediately and destroy the material in its entirety, whether electronic or hard copy. Thank you.

2 2

Qdec Error
by Limachia, Gaurang (NIH/NINDS) [F] 28 Jul '16

28 Jul '16

Dear Fressurfer Experts, My table.dat file loaded fine. However, I came across the following error when I was running the Qdec generate stats data table. If you can let me know what I can do to fix the following error I would greatly appreciate it. Uncaught exception: command failed: asegstats2table --common-segs --meas volume --tablefile /local/limachiagv/freesurfer/subjects/qdec/stats_tables/aseg.volume.stats.dat --statsfile=aseg.stats --subjects CON_201 CON_202 CON_203 CON_204 CON_205 CON_206 CON_207 CON_209 CON_211 CON_212 CON_213 CON_214 CON_215 CON_216 CON_217 CON_218 CON_219 CON_220 CON_221 CON_222 CON_223 CON_225 CON_226 CON_227 CON_228 CON_230 CON_231 CON_232 CON_233 CON_234 CON_235 CON_236 CON_237 CON_239 CON_240 CON_241 CON_242 CON_244 CON_245 CON_246 CON_247 CON_248 CON_249 CON_250 CON_251 CON_252 CON_253 CON_254 CON_255 CON_256 CON_257 CON_258 CON_259 CON_260 PAT_402 PAT_403 PAT_407 PAT_409 PAT_410 PAT_411 PAT_412 PAT_413 PAT_414 PAT_415 PAT_416 PAT_417 PAT_418 PAT_419 PAT_421 PAT_422 PAT_424 PAT_425 PAT_426 PAT_427 PAT_428 PAT_429 PAT_430 PAT_431 PAT_432 PAT_433 PAT_437 PAT_439 PAT_440 SUBJECTS_DIR : /local/limachiagv/freesurfer/subjects Parsing the .stats files ERROR: The stats file /local/limachiagv/freesurfer/subjects/CON_201/stats/aseg.stats is not found or is too small to be a valid statsfile Use --skip flag to automatically skip bad stats files Thanks, Gaurang

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Question about error
by Dorsa Haji Ghaffari 28 Jul '16

28 Jul '16

Hi, I ran recon-all on a series of dicom MRIs but it exited with errors, I have copied and pasted the recon-all.log here . I appreciate any suggestions. thank you Dorsa Tue Jul 26 15:05:08 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg /usr/local/freesurfer/bin/recon-all -i JM7965_3TSRT_0001.dcm -subject jmcoreg -all subjid jmcoreg setenv SUBJECTS_DIR /usr/local/freesurfer/subjects FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos4-stable-pub-v5.3.0 Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 64 kbytes maxproc 5875 maxlocks unlimited maxsignal 5875 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buffers cached Mem: 766528 682644 83884 0 9468 359488 -/+ buffers/cache: 313688 452840 Swap: 1944572 30856 1913716 ######################################## program versions used $Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $ $Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $ mri_convert -all-info ProgramName: mri_convert ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 FLIRT version 5.5 $Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $ mri_convert --version stable5 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:08-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@fishie (i686-pc-linux-gnu) on 2010-02-20 at 20:19:13 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_label2label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_concatenate_lta ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:09-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ ProgramName: mri_robust_register ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable5 $ TimeStamp: 2016/07/26-19:05:10-GMT BuildTimeStamp: May 13 2013 18:53:32 CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ User: fsuser Machine: xubuntu-VirtualBox Platform: Linux PlatformVersion: 3.2.0-23-generic CompilerName: GCC CompilerVersion: 30400 ####################################### GCADIR /usr/local/freesurfer/average GCA RB_all_2008-03-26.gca GCASkull RB_all_withskull_2008-03-26.gca AvgCurvTif average.curvature.filled.buckner40.tif GCSDIR /usr/local/freesurfer/average GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ####################################### /usr/local/freesurfer/subjects/jmcoreg mri_convert /home/fsuser/JM7965_3TSRT_0001.dcm /usr/local/freesurfer/subjects/jmcoreg/mri/orig/001.mgz mri_convert /home/fsuser/JM7965_3TSRT_0001.dcm /usr/local/freesurfer/subjects/jmcoreg/mri/orig/001.mgz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /home/fsuser/JM7965_3TSRT_0001.dcm... Starting DICOMRead2() dcmfile = /home/fsuser/JM7965_3TSRT_0001.dcm dcmdir = /home/fsuser WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0001.dcm Ref Series No = 502 Found 750 files, checking for dicoms WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0001.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0002.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0003.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0004.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0005.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0006.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0007.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0008.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0009.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0010.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0011.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0012.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0013.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0014.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0015.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0016.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0017.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0018.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0019.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0020.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0021.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0022.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0023.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0024.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0025.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0026.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0027.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0028.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0029.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0030.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0031.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0032.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0033.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0034.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0035.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0036.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0037.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0038.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0039.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0040.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0041.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0042.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0043.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0044.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0045.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0046.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0047.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0048.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0049.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0050.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0051.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0052.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0053.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0054.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0055.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0056.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0057.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0058.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0059.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0060.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0061.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0062.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0063.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0064.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0065.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0066.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0067.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0068.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0069.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0070.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0071.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0072.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0073.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0074.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0075.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0076.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0077.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0078.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0079.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0080.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0081.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0082.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0083.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0084.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0085.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0086.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0087.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0088.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0089.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0090.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0091.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0092.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0093.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0094.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0095.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0096.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0097.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0098.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0099.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0100.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0101.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0102.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0103.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0104.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0105.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0106.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0107.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0108.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0109.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0110.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0111.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0112.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0113.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0114.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0115.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0116.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0117.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0118.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0119.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0120.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0121.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0122.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0123.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0124.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0125.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0126.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0127.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0128.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0129.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0130.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0131.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0132.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0133.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0134.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0135.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0136.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0137.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0138.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0139.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0140.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0141.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0142.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0143.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0144.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0145.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0146.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0147.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0148.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0149.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0150.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0151.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0152.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0153.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0154.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0155.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0156.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0157.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0158.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0159.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0160.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0161.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0162.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0163.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0164.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0165.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0166.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0167.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0168.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0169.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0170.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0171.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0172.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0173.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0174.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0175.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0176.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0177.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0178.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0179.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0180.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0181.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0182.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0183.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0184.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0185.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0186.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0187.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0188.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0189.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0190.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0191.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0192.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0193.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0194.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0195.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0196.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0197.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0198.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0199.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0200.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0201.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0202.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0203.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0204.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0205.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0206.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0207.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0208.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0209.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0210.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0211.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0212.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0213.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0214.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0215.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0216.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0217.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0218.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0219.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0220.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0221.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0222.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0223.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0224.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0225.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0226.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0227.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0228.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0229.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0230.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0231.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0232.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0233.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0234.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0235.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0236.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0237.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0238.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0239.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0240.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0241.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0242.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0243.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0244.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0245.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0246.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0247.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0248.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0249.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0250.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0251.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0252.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0253.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0254.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0255.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0256.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0257.dcm WARNING: tag ImageNumber not found in 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/home/fsuser/GM9117_3TC_Copy_0310.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0311.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0312.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0313.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0314.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0315.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0316.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0317.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0318.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0319.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0320.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0321.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0322.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0323.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0324.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0325.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0326.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0327.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0328.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0329.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0330.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0331.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0332.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0333.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0334.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0335.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0336.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0337.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0338.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0339.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0340.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0341.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0342.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0343.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0344.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0345.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0346.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0347.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0348.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0349.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0350.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0351.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0352.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0353.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0354.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0355.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0356.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0357.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0358.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0359.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0360.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0361.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0362.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0363.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0364.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0365.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0366.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0367.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0368.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0369.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0370.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0371.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0372.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0373.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0374.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0375.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0376.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0377.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0378.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0379.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0380.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0381.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0382.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0383.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0384.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0385.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0386.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0387.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0388.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0389.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0390.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0391.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0392.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0393.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0394.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0395.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0396.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0397.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0398.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0399.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0400.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0401.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0402.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0403.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0404.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0405.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0406.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0407.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0408.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0409.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0410.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0411.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0412.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0413.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0414.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0415.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0416.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0417.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0418.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0419.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0420.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0421.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0422.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0423.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0424.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0425.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0426.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0427.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0428.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0429.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0430.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0431.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0432.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0433.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0434.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0435.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0436.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0437.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0438.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0439.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0440.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0441.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0442.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0443.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0444.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0445.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0446.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0447.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0448.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0449.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0450.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0451.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0452.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0453.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0454.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0455.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0456.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0457.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0001.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0002.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0003.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0004.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0005.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0006.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0007.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0008.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0009.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0010.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0011.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0012.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0013.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0014.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0016.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0017.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0018.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0019.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0020.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0021.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0022.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0023.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0024.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0025.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0026.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0027.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0028.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0029.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0031.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0032.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0033.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0034.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0035.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0036.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0037.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0038.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0039.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0040.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0041.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0042.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0043.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0045.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0046.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0047.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0048.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0049.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0050.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0051.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0052.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0053.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0054.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0055.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0056.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0057.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0058.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0060.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0061.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0062.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0063.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0064.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0065.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0066.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0067.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0068.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0069.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0070.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0071.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0072.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0074.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0075.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0076.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0077.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0078.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0079.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0080.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0081.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0082.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0083.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0084.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0085.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0086.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0087.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0089.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0090.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0091.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0092.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0093.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0094.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0095.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0096.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0097.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0098.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0099.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0100.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0101.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0102.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0104.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0105.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0106.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0107.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0108.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0109.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0110.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0111.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0112.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0113.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0114.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0115.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0116.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0117.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0119.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0120.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0121.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0122.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0123.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0124.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0125.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0126.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0127.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0128.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0129.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0130.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0131.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0132.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0133.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0134.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0135.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0136.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0137.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0138.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0139.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0140.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0141.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0142.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0143.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0144.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0145.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0146.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0148.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0149.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0150.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0151.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0152.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0153.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0154.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0155.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0156.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0157.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0158.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0159.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0160.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0161.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0163.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0164.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0165.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0166.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0167.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0168.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0169.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0170.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0171.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0172.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0173.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0174.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0175.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0176.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0178.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0179.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0180.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0181.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0182.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0183.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0184.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0185.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0186.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0187.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0188.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0189.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0190.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0192.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0193.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0194.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0195.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0196.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0197.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0198.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0199.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0200.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0201.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0202.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0203.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0204.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0205.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0207.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0208.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0209.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0210.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0211.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0212.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0213.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0214.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0215.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0216.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0217.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0218.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0219.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0220.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0222.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0223.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0224.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0225.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0226.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0227.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0228.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0229.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0230.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0231.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0232.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0233.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0234.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0235.dcm Found 235 dicom files in series. WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0001.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0002.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0003.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0004.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0005.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0006.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0007.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0008.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0009.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0010.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0011.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0012.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0013.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0014.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0015.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0016.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0017.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0018.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0019.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0020.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0021.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0022.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0023.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0024.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0025.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0026.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0027.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0028.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0029.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0030.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0031.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0032.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0033.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0034.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0035.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0036.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0037.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0038.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0039.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0040.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0041.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0042.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0043.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0044.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0045.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0046.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0047.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0048.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0049.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0050.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0051.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0052.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0053.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0054.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0055.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0056.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0057.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0058.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0059.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0060.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0061.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0062.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0063.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0064.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0065.dcm WARNING: tag ImageNumber not found in 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/home/fsuser/GM9117_3TC_Copy_0092.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0093.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0094.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0095.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0096.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0097.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0098.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0099.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0100.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0101.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0102.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0103.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0104.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0105.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0106.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0107.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0108.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0109.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0110.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0111.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0112.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0113.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0114.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0115.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0116.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0117.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0118.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0119.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0120.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0121.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0122.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0123.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0124.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0125.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0126.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0127.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0128.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0129.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0130.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0131.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0132.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0133.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0134.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0135.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0136.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0137.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0138.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0139.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0140.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0141.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0142.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0143.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0144.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0145.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0146.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0147.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0148.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0149.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0150.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0151.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0152.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0153.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0154.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0155.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0156.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0157.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0158.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0159.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0160.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0161.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0162.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0163.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0164.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0165.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0166.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0167.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0168.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0169.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0170.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0171.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0172.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0173.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0174.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0175.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0176.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0177.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0178.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0179.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0180.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0181.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0182.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0183.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0184.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0185.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0186.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0187.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0188.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0189.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0190.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0191.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0192.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0193.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0194.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0195.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0196.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0197.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0198.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0199.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0200.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0201.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0202.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0203.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0204.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0205.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0206.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0207.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0208.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0209.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0210.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0211.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0212.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0213.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0214.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0215.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0216.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0217.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0218.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0219.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0220.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0221.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0222.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0223.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0224.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0225.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0226.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0227.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0228.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0229.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0230.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0231.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0232.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0233.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0234.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0235.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0236.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0237.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0238.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0239.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0240.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0241.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0242.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0243.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0244.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0245.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0246.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0247.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0248.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0249.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0250.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0251.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0252.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0253.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0254.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0255.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0256.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0257.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0258.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0259.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0260.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0261.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0262.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0263.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0264.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0265.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0266.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0267.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0268.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0269.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0270.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0271.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0272.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0273.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0274.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0275.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0276.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0277.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0278.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0279.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0280.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0281.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0282.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0283.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0284.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0285.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0286.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0287.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0288.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0289.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0290.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0291.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0292.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0293.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0294.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0295.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0296.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0297.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0298.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0299.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0300.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0301.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0302.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0303.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0304.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0305.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0306.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0307.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0308.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0309.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0310.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0311.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0312.dcm WARNING: tag ImageNumber not found in 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/home/fsuser/GM9117_3TC_Copy_0365.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0366.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0367.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0368.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0369.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0370.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0371.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0372.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0373.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0374.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0375.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0376.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0377.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0378.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0379.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0380.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0381.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0382.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0383.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0384.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0385.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0386.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0387.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0388.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0389.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0390.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0391.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0392.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0393.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0394.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0395.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0396.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0397.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0398.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0399.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0400.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0401.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0402.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0403.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0404.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0405.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0406.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0407.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0408.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0409.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0410.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0411.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0412.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0413.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0414.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0415.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0416.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0417.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0418.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0419.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0420.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0421.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0422.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0423.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0424.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0425.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0426.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0427.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0428.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0429.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0430.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0431.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0432.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0433.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0434.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0435.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0436.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0437.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0438.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0439.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0440.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0441.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0442.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0443.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0444.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0445.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0446.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0447.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0448.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0449.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0450.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0451.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0452.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0453.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0454.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0455.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0456.dcm WARNING: tag ImageNumber not found in /home/fsuser/GM9117_3TC_Copy_0457.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0001.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0002.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0003.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0004.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0005.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0006.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0007.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0008.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0009.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0010.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0011.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0012.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0013.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0014.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0016.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0017.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0018.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0019.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0020.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0021.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0022.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0023.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0024.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0025.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0026.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0027.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0028.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0029.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0031.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0032.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0033.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0034.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0035.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0036.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0037.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0038.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0039.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0040.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0041.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0042.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0043.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0045.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0046.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0047.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0048.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0049.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0050.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0051.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0052.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0053.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0054.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0055.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0056.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0057.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0058.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0060.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0061.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0062.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0063.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0064.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0065.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0066.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0067.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0068.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0069.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0070.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0071.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0072.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0074.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0075.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0076.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0077.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0078.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0079.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0080.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0081.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0082.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0083.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0084.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0085.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0086.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0087.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0089.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0090.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0091.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0092.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0093.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0094.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0095.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0096.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0097.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0098.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0099.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0100.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0101.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0102.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0104.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0105.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0106.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0107.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0108.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0109.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0110.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0111.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0112.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0113.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0114.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0115.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0116.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0117.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0119.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0120.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0121.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0122.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0123.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0124.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0125.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0126.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0127.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0128.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0129.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0130.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0131.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0132.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0133.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0134.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0135.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0136.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0137.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0138.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0139.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0140.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0141.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0142.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0143.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0144.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0145.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0146.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0148.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0149.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0150.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0151.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0152.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0153.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0154.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0155.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0156.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0157.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0158.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0159.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0160.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0161.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0163.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0164.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0165.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0166.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0167.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0168.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0169.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0170.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0171.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0172.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0173.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0174.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0175.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0176.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0178.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0179.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0180.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0181.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0182.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0183.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0184.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0185.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0186.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0187.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0188.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0189.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0190.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0192.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0193.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0194.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0195.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0196.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0197.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0198.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0199.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0200.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0201.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0202.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0203.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0204.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0205.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0207.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0208.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0209.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0210.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0211.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0212.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0213.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0214.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0215.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0216.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0217.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0218.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0219.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0220.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0222.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0223.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0224.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0225.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0226.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0227.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0228.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0229.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0230.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0231.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0232.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0233.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0234.dcm WARNING: tag ImageNumber not found in /home/fsuser/JM7965_3TSRT_0235.dcm First Sorting WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0002.dcm File2: /home/fsuser/JM7965_3TSRT_0003.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0001.dcm File2: /home/fsuser/JM7965_3TSRT_0002.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0004.dcm File2: /home/fsuser/JM7965_3TSRT_0005.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0006.dcm File2: /home/fsuser/JM7965_3TSRT_0007.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0004.dcm File2: /home/fsuser/JM7965_3TSRT_0006.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0005.dcm File2: /home/fsuser/JM7965_3TSRT_0006.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0001.dcm File2: /home/fsuser/JM7965_3TSRT_0004.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0002.dcm File2: /home/fsuser/JM7965_3TSRT_0004.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0003.dcm File2: /home/fsuser/JM7965_3TSRT_0004.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0009.dcm File2: /home/fsuser/JM7965_3TSRT_0010.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0008.dcm File2: /home/fsuser/JM7965_3TSRT_0009.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0011.dcm File2: /home/fsuser/JM7965_3TSRT_0012.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0013.dcm File2: /home/fsuser/JM7965_3TSRT_0014.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0011.dcm File2: /home/fsuser/JM7965_3TSRT_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0012.dcm File2: /home/fsuser/JM7965_3TSRT_0013.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0008.dcm File2: /home/fsuser/JM7965_3TSRT_0011.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0009.dcm File2: /home/fsuser/JM7965_3TSRT_0011.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0010.dcm File2: /home/fsuser/JM7965_3TSRT_0011.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0001.dcm File2: /home/fsuser/JM7965_3TSRT_0008.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0002.dcm File2: /home/fsuser/JM7965_3TSRT_0008.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0003.dcm File2: /home/fsuser/JM7965_3TSRT_0008.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0004.dcm File2: /home/fsuser/JM7965_3TSRT_0008.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0005.dcm File2: /home/fsuser/JM7965_3TSRT_0008.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0006.dcm File2: /home/fsuser/JM7965_3TSRT_0008.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0007.dcm File2: /home/fsuser/JM7965_3TSRT_0008.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0016.dcm File2: /home/fsuser/JM7965_3TSRT_0017.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0015.dcm File2: /home/fsuser/JM7965_3TSRT_0016.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0018.dcm File2: /home/fsuser/JM7965_3TSRT_0019.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0020.dcm File2: /home/fsuser/JM7965_3TSRT_0021.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0018.dcm File2: /home/fsuser/JM7965_3TSRT_0020.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0019.dcm File2: /home/fsuser/JM7965_3TSRT_0020.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0015.dcm File2: /home/fsuser/JM7965_3TSRT_0018.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0016.dcm File2: /home/fsuser/JM7965_3TSRT_0018.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0017.dcm File2: /home/fsuser/JM7965_3TSRT_0018.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0022.dcm File2: /home/fsuser/JM7965_3TSRT_0023.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0024.dcm File2: /home/fsuser/JM7965_3TSRT_0025.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0022.dcm File2: /home/fsuser/JM7965_3TSRT_0024.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0023.dcm File2: /home/fsuser/JM7965_3TSRT_0024.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0026.dcm File2: /home/fsuser/JM7965_3TSRT_0027.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0028.dcm File2: /home/fsuser/JM7965_3TSRT_0029.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0026.dcm File2: /home/fsuser/JM7965_3TSRT_0028.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0027.dcm File2: /home/fsuser/JM7965_3TSRT_0028.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0022.dcm File2: /home/fsuser/JM7965_3TSRT_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0023.dcm File2: /home/fsuser/JM7965_3TSRT_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0024.dcm File2: /home/fsuser/JM7965_3TSRT_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0025.dcm File2: /home/fsuser/JM7965_3TSRT_0026.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0015.dcm File2: /home/fsuser/JM7965_3TSRT_0022.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0016.dcm File2: /home/fsuser/JM7965_3TSRT_0022.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0017.dcm File2: /home/fsuser/JM7965_3TSRT_0022.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0018.dcm File2: /home/fsuser/JM7965_3TSRT_0022.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0019.dcm File2: /home/fsuser/JM7965_3TSRT_0022.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0020.dcm File2: /home/fsuser/JM7965_3TSRT_0022.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0021.dcm File2: /home/fsuser/JM7965_3TSRT_0022.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0001.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0002.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0003.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0004.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0005.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0006.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0007.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0008.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0009.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0010.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0011.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0012.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0013.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0014.dcm File2: /home/fsuser/JM7965_3TSRT_0015.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0031.dcm File2: /home/fsuser/JM7965_3TSRT_0032.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0030.dcm File2: /home/fsuser/JM7965_3TSRT_0031.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0033.dcm File2: /home/fsuser/JM7965_3TSRT_0034.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0035.dcm File2: /home/fsuser/JM7965_3TSRT_0036.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0033.dcm File2: /home/fsuser/JM7965_3TSRT_0035.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0034.dcm File2: /home/fsuser/JM7965_3TSRT_0035.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0030.dcm File2: /home/fsuser/JM7965_3TSRT_0033.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0031.dcm File2: /home/fsuser/JM7965_3TSRT_0033.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0032.dcm File2: /home/fsuser/JM7965_3TSRT_0033.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0038.dcm File2: /home/fsuser/JM7965_3TSRT_0039.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0037.dcm File2: /home/fsuser/JM7965_3TSRT_0038.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0040.dcm File2: /home/fsuser/JM7965_3TSRT_0041.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0042.dcm File2: /home/fsuser/JM7965_3TSRT_0043.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0040.dcm File2: /home/fsuser/JM7965_3TSRT_0042.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0041.dcm File2: /home/fsuser/JM7965_3TSRT_0042.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0037.dcm File2: /home/fsuser/JM7965_3TSRT_0040.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0038.dcm File2: /home/fsuser/JM7965_3TSRT_0040.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0039.dcm File2: /home/fsuser/JM7965_3TSRT_0040.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0030.dcm File2: /home/fsuser/JM7965_3TSRT_0037.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0031.dcm File2: /home/fsuser/JM7965_3TSRT_0037.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0032.dcm File2: /home/fsuser/JM7965_3TSRT_0037.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0033.dcm File2: /home/fsuser/JM7965_3TSRT_0037.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0034.dcm File2: /home/fsuser/JM7965_3TSRT_0037.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0035.dcm File2: /home/fsuser/JM7965_3TSRT_0037.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0036.dcm File2: /home/fsuser/JM7965_3TSRT_0037.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0045.dcm File2: /home/fsuser/JM7965_3TSRT_0046.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0044.dcm File2: /home/fsuser/JM7965_3TSRT_0045.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0047.dcm File2: /home/fsuser/JM7965_3TSRT_0048.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0049.dcm File2: /home/fsuser/JM7965_3TSRT_0050.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0047.dcm File2: /home/fsuser/JM7965_3TSRT_0049.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0048.dcm File2: /home/fsuser/JM7965_3TSRT_0049.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0044.dcm File2: /home/fsuser/JM7965_3TSRT_0047.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0045.dcm File2: /home/fsuser/JM7965_3TSRT_0047.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0046.dcm File2: /home/fsuser/JM7965_3TSRT_0047.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0051.dcm File2: /home/fsuser/JM7965_3TSRT_0052.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0053.dcm File2: /home/fsuser/JM7965_3TSRT_0054.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0051.dcm File2: /home/fsuser/JM7965_3TSRT_0053.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0052.dcm File2: /home/fsuser/JM7965_3TSRT_0053.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0055.dcm File2: /home/fsuser/JM7965_3TSRT_0056.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0057.dcm File2: /home/fsuser/JM7965_3TSRT_0058.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0055.dcm File2: /home/fsuser/JM7965_3TSRT_0057.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0056.dcm File2: /home/fsuser/JM7965_3TSRT_0057.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0051.dcm File2: /home/fsuser/JM7965_3TSRT_0055.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0052.dcm File2: /home/fsuser/JM7965_3TSRT_0055.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0053.dcm File2: /home/fsuser/JM7965_3TSRT_0055.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0054.dcm File2: /home/fsuser/JM7965_3TSRT_0055.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0044.dcm File2: /home/fsuser/JM7965_3TSRT_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0045.dcm File2: /home/fsuser/JM7965_3TSRT_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0046.dcm File2: /home/fsuser/JM7965_3TSRT_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0047.dcm File2: /home/fsuser/JM7965_3TSRT_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0048.dcm File2: /home/fsuser/JM7965_3TSRT_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0049.dcm File2: /home/fsuser/JM7965_3TSRT_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0050.dcm File2: /home/fsuser/JM7965_3TSRT_0051.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0030.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0031.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0032.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0033.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0034.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0035.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0036.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0037.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0038.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0039.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0040.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0041.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0042.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0043.dcm File2: /home/fsuser/JM7965_3TSRT_0044.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0001.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0002.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0003.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0004.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0005.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0006.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0007.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0008.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0009.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0010.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0011.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0012.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0013.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0014.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0015.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0016.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0017.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0018.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0019.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0020.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0021.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0022.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0023.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0024.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0025.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0026.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0027.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0028.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0029.dcm File2: /home/fsuser/JM7965_3TSRT_0030.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0060.dcm File2: /home/fsuser/JM7965_3TSRT_0061.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0059.dcm File2: /home/fsuser/JM7965_3TSRT_0060.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0062.dcm File2: /home/fsuser/JM7965_3TSRT_0063.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0064.dcm File2: /home/fsuser/JM7965_3TSRT_0065.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0062.dcm File2: /home/fsuser/JM7965_3TSRT_0064.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0063.dcm File2: /home/fsuser/JM7965_3TSRT_0064.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0059.dcm File2: /home/fsuser/JM7965_3TSRT_0062.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0060.dcm File2: /home/fsuser/JM7965_3TSRT_0062.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0061.dcm File2: /home/fsuser/JM7965_3TSRT_0062.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0067.dcm File2: /home/fsuser/JM7965_3TSRT_0068.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0066.dcm File2: /home/fsuser/JM7965_3TSRT_0067.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0069.dcm File2: /home/fsuser/JM7965_3TSRT_0070.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0071.dcm File2: /home/fsuser/JM7965_3TSRT_0072.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0069.dcm File2: /home/fsuser/JM7965_3TSRT_0071.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0070.dcm File2: /home/fsuser/JM7965_3TSRT_0071.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0066.dcm File2: /home/fsuser/JM7965_3TSRT_0069.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0067.dcm File2: /home/fsuser/JM7965_3TSRT_0069.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0068.dcm File2: /home/fsuser/JM7965_3TSRT_0069.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0059.dcm File2: /home/fsuser/JM7965_3TSRT_0066.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0060.dcm File2: /home/fsuser/JM7965_3TSRT_0066.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0061.dcm File2: /home/fsuser/JM7965_3TSRT_0066.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0062.dcm File2: /home/fsuser/JM7965_3TSRT_0066.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0063.dcm File2: /home/fsuser/JM7965_3TSRT_0066.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0064.dcm File2: /home/fsuser/JM7965_3TSRT_0066.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0065.dcm File2: /home/fsuser/JM7965_3TSRT_0066.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0074.dcm File2: /home/fsuser/JM7965_3TSRT_0075.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0073.dcm File2: /home/fsuser/JM7965_3TSRT_0074.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0076.dcm File2: /home/fsuser/JM7965_3TSRT_0077.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0078.dcm File2: /home/fsuser/JM7965_3TSRT_0079.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0076.dcm File2: /home/fsuser/JM7965_3TSRT_0078.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0077.dcm File2: /home/fsuser/JM7965_3TSRT_0078.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0073.dcm File2: /home/fsuser/JM7965_3TSRT_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0074.dcm File2: /home/fsuser/JM7965_3TSRT_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0075.dcm File2: /home/fsuser/JM7965_3TSRT_0076.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0080.dcm File2: /home/fsuser/JM7965_3TSRT_0081.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0082.dcm File2: /home/fsuser/JM7965_3TSRT_0083.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0080.dcm File2: /home/fsuser/JM7965_3TSRT_0082.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0081.dcm File2: /home/fsuser/JM7965_3TSRT_0082.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0084.dcm File2: /home/fsuser/JM7965_3TSRT_0085.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0086.dcm File2: /home/fsuser/JM7965_3TSRT_0087.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0084.dcm File2: /home/fsuser/JM7965_3TSRT_0086.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0085.dcm File2: /home/fsuser/JM7965_3TSRT_0086.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0080.dcm File2: /home/fsuser/JM7965_3TSRT_0084.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0081.dcm File2: /home/fsuser/JM7965_3TSRT_0084.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0082.dcm File2: /home/fsuser/JM7965_3TSRT_0084.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0083.dcm File2: /home/fsuser/JM7965_3TSRT_0084.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0073.dcm File2: /home/fsuser/JM7965_3TSRT_0080.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0074.dcm File2: /home/fsuser/JM7965_3TSRT_0080.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0075.dcm File2: /home/fsuser/JM7965_3TSRT_0080.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0076.dcm File2: /home/fsuser/JM7965_3TSRT_0080.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0077.dcm File2: /home/fsuser/JM7965_3TSRT_0080.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0078.dcm File2: /home/fsuser/JM7965_3TSRT_0080.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0079.dcm File2: /home/fsuser/JM7965_3TSRT_0080.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0059.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0060.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0061.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0062.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0063.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0064.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0065.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0066.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0067.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0068.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0069.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0070.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0071.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0072.dcm File2: /home/fsuser/JM7965_3TSRT_0073.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0089.dcm File2: /home/fsuser/JM7965_3TSRT_0090.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0088.dcm File2: /home/fsuser/JM7965_3TSRT_0089.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0091.dcm File2: /home/fsuser/JM7965_3TSRT_0092.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0093.dcm File2: /home/fsuser/JM7965_3TSRT_0094.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0091.dcm File2: /home/fsuser/JM7965_3TSRT_0093.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0092.dcm File2: /home/fsuser/JM7965_3TSRT_0093.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0088.dcm File2: /home/fsuser/JM7965_3TSRT_0091.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0089.dcm File2: /home/fsuser/JM7965_3TSRT_0091.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0090.dcm File2: /home/fsuser/JM7965_3TSRT_0091.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0095.dcm File2: /home/fsuser/JM7965_3TSRT_0096.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0097.dcm File2: /home/fsuser/JM7965_3TSRT_0098.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0095.dcm File2: /home/fsuser/JM7965_3TSRT_0097.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0096.dcm File2: /home/fsuser/JM7965_3TSRT_0097.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0099.dcm File2: /home/fsuser/JM7965_3TSRT_0100.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0101.dcm File2: /home/fsuser/JM7965_3TSRT_0102.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0099.dcm File2: /home/fsuser/JM7965_3TSRT_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0100.dcm File2: /home/fsuser/JM7965_3TSRT_0101.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0095.dcm File2: /home/fsuser/JM7965_3TSRT_0099.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0096.dcm File2: /home/fsuser/JM7965_3TSRT_0099.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0097.dcm File2: /home/fsuser/JM7965_3TSRT_0099.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0098.dcm File2: /home/fsuser/JM7965_3TSRT_0099.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0088.dcm File2: /home/fsuser/JM7965_3TSRT_0095.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0089.dcm File2: /home/fsuser/JM7965_3TSRT_0095.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0090.dcm File2: /home/fsuser/JM7965_3TSRT_0095.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0091.dcm File2: /home/fsuser/JM7965_3TSRT_0095.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0092.dcm File2: /home/fsuser/JM7965_3TSRT_0095.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0093.dcm File2: /home/fsuser/JM7965_3TSRT_0095.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0094.dcm File2: /home/fsuser/JM7965_3TSRT_0095.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0104.dcm File2: /home/fsuser/JM7965_3TSRT_0105.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0103.dcm File2: /home/fsuser/JM7965_3TSRT_0104.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0106.dcm File2: /home/fsuser/JM7965_3TSRT_0107.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0108.dcm File2: /home/fsuser/JM7965_3TSRT_0109.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0106.dcm File2: /home/fsuser/JM7965_3TSRT_0108.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0107.dcm File2: /home/fsuser/JM7965_3TSRT_0108.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0103.dcm File2: /home/fsuser/JM7965_3TSRT_0106.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0104.dcm File2: /home/fsuser/JM7965_3TSRT_0106.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0105.dcm File2: /home/fsuser/JM7965_3TSRT_0106.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0110.dcm File2: /home/fsuser/JM7965_3TSRT_0111.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0112.dcm File2: /home/fsuser/JM7965_3TSRT_0113.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0110.dcm File2: /home/fsuser/JM7965_3TSRT_0112.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0111.dcm File2: /home/fsuser/JM7965_3TSRT_0112.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0114.dcm File2: /home/fsuser/JM7965_3TSRT_0115.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0116.dcm File2: /home/fsuser/JM7965_3TSRT_0117.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0114.dcm File2: /home/fsuser/JM7965_3TSRT_0116.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0115.dcm File2: /home/fsuser/JM7965_3TSRT_0116.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0110.dcm File2: /home/fsuser/JM7965_3TSRT_0114.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0111.dcm File2: /home/fsuser/JM7965_3TSRT_0114.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0112.dcm File2: /home/fsuser/JM7965_3TSRT_0114.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0113.dcm File2: /home/fsuser/JM7965_3TSRT_0114.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0103.dcm File2: /home/fsuser/JM7965_3TSRT_0110.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0104.dcm File2: /home/fsuser/JM7965_3TSRT_0110.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0105.dcm File2: /home/fsuser/JM7965_3TSRT_0110.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0106.dcm File2: /home/fsuser/JM7965_3TSRT_0110.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0107.dcm File2: /home/fsuser/JM7965_3TSRT_0110.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0108.dcm File2: /home/fsuser/JM7965_3TSRT_0110.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0109.dcm File2: /home/fsuser/JM7965_3TSRT_0110.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0088.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0089.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0090.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0091.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0092.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0093.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0094.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0095.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0096.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0097.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0098.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0099.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0100.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0101.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0102.dcm File2: /home/fsuser/JM7965_3TSRT_0103.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0059.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0060.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0061.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0062.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0063.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0064.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0065.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0066.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0067.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0068.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0069.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0070.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0071.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0072.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0073.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0074.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0075.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0076.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0077.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0078.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0079.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0080.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0081.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0082.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0083.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0084.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0085.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0086.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0087.dcm File2: /home/fsuser/JM7965_3TSRT_0088.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0001.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0002.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0003.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0004.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0005.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0006.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0007.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0008.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0009.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0010.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0011.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0012.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0013.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0014.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0015.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0016.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0017.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0018.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0019.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0020.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0021.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0022.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0023.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0024.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0025.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0026.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0027.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0028.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0029.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0030.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0031.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0032.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0033.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0034.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0035.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0036.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0037.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0038.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0039.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0040.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0041.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0042.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0043.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0044.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0045.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0046.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0047.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0048.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0049.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0050.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0051.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0052.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0053.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0054.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0055.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0056.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0057.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0058.dcm File2: /home/fsuser/JM7965_3TSRT_0059.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0119.dcm File2: /home/fsuser/JM7965_3TSRT_0120.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0118.dcm File2: /home/fsuser/JM7965_3TSRT_0119.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0121.dcm File2: /home/fsuser/JM7965_3TSRT_0122.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0123.dcm File2: /home/fsuser/JM7965_3TSRT_0124.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0121.dcm File2: /home/fsuser/JM7965_3TSRT_0123.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0122.dcm File2: /home/fsuser/JM7965_3TSRT_0123.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0118.dcm File2: /home/fsuser/JM7965_3TSRT_0121.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0119.dcm File2: /home/fsuser/JM7965_3TSRT_0121.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0120.dcm File2: /home/fsuser/JM7965_3TSRT_0121.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0126.dcm File2: /home/fsuser/JM7965_3TSRT_0127.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0125.dcm File2: /home/fsuser/JM7965_3TSRT_0126.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0128.dcm File2: /home/fsuser/JM7965_3TSRT_0129.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0130.dcm File2: /home/fsuser/JM7965_3TSRT_0131.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0128.dcm File2: /home/fsuser/JM7965_3TSRT_0130.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0129.dcm File2: /home/fsuser/JM7965_3TSRT_0130.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0125.dcm File2: /home/fsuser/JM7965_3TSRT_0128.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0126.dcm File2: /home/fsuser/JM7965_3TSRT_0128.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0127.dcm File2: /home/fsuser/JM7965_3TSRT_0128.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0118.dcm File2: /home/fsuser/JM7965_3TSRT_0125.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0119.dcm File2: /home/fsuser/JM7965_3TSRT_0125.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0120.dcm File2: /home/fsuser/JM7965_3TSRT_0125.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0121.dcm File2: /home/fsuser/JM7965_3TSRT_0125.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0122.dcm File2: /home/fsuser/JM7965_3TSRT_0125.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0123.dcm File2: /home/fsuser/JM7965_3TSRT_0125.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0124.dcm File2: /home/fsuser/JM7965_3TSRT_0125.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0133.dcm File2: /home/fsuser/JM7965_3TSRT_0134.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0132.dcm File2: /home/fsuser/JM7965_3TSRT_0133.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0135.dcm File2: /home/fsuser/JM7965_3TSRT_0136.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0137.dcm File2: /home/fsuser/JM7965_3TSRT_0138.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0135.dcm File2: /home/fsuser/JM7965_3TSRT_0137.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0136.dcm File2: /home/fsuser/JM7965_3TSRT_0137.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0132.dcm File2: /home/fsuser/JM7965_3TSRT_0135.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0133.dcm File2: /home/fsuser/JM7965_3TSRT_0135.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0134.dcm File2: /home/fsuser/JM7965_3TSRT_0135.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0139.dcm File2: /home/fsuser/JM7965_3TSRT_0140.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0141.dcm File2: /home/fsuser/JM7965_3TSRT_0142.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0139.dcm File2: /home/fsuser/JM7965_3TSRT_0141.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0140.dcm File2: /home/fsuser/JM7965_3TSRT_0141.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0143.dcm File2: /home/fsuser/JM7965_3TSRT_0144.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0145.dcm File2: /home/fsuser/JM7965_3TSRT_0146.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0143.dcm File2: /home/fsuser/JM7965_3TSRT_0145.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0144.dcm File2: /home/fsuser/JM7965_3TSRT_0145.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0139.dcm File2: /home/fsuser/JM7965_3TSRT_0143.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0140.dcm File2: /home/fsuser/JM7965_3TSRT_0143.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0141.dcm File2: /home/fsuser/JM7965_3TSRT_0143.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0142.dcm File2: /home/fsuser/JM7965_3TSRT_0143.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0132.dcm File2: /home/fsuser/JM7965_3TSRT_0139.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0133.dcm File2: /home/fsuser/JM7965_3TSRT_0139.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0134.dcm File2: /home/fsuser/JM7965_3TSRT_0139.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0135.dcm File2: /home/fsuser/JM7965_3TSRT_0139.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0136.dcm File2: /home/fsuser/JM7965_3TSRT_0139.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0137.dcm File2: /home/fsuser/JM7965_3TSRT_0139.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0138.dcm File2: /home/fsuser/JM7965_3TSRT_0139.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0118.dcm File2: /home/fsuser/JM7965_3TSRT_0132.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0119.dcm File2: /home/fsuser/JM7965_3TSRT_0132.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0120.dcm File2: /home/fsuser/JM7965_3TSRT_0132.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0121.dcm File2: /home/fsuser/JM7965_3TSRT_0132.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0122.dcm File2: /home/fsuser/JM7965_3TSRT_0132.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0123.dcm File2: /home/fsuser/JM7965_3TSRT_0132.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0124.dcm File2: /home/fsuser/JM7965_3TSRT_0132.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0125.dcm File2: /home/fsuser/JM7965_3TSRT_0132.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0126.dcm File2: 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File1: /home/fsuser/JM7965_3TSRT_0147.dcm File2: /home/fsuser/JM7965_3TSRT_0148.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0150.dcm File2: /home/fsuser/JM7965_3TSRT_0151.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0152.dcm File2: /home/fsuser/JM7965_3TSRT_0153.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0150.dcm File2: /home/fsuser/JM7965_3TSRT_0152.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0151.dcm File2: /home/fsuser/JM7965_3TSRT_0152.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0147.dcm File2: /home/fsuser/JM7965_3TSRT_0150.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0148.dcm File2: /home/fsuser/JM7965_3TSRT_0150.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0149.dcm File2: /home/fsuser/JM7965_3TSRT_0150.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0154.dcm File2: /home/fsuser/JM7965_3TSRT_0155.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0156.dcm File2: /home/fsuser/JM7965_3TSRT_0157.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0154.dcm File2: /home/fsuser/JM7965_3TSRT_0156.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0155.dcm File2: /home/fsuser/JM7965_3TSRT_0156.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0158.dcm File2: /home/fsuser/JM7965_3TSRT_0159.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0160.dcm File2: 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File1: /home/fsuser/JM7965_3TSRT_0147.dcm File2: /home/fsuser/JM7965_3TSRT_0154.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0148.dcm File2: /home/fsuser/JM7965_3TSRT_0154.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0149.dcm File2: /home/fsuser/JM7965_3TSRT_0154.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0150.dcm File2: /home/fsuser/JM7965_3TSRT_0154.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0151.dcm File2: /home/fsuser/JM7965_3TSRT_0154.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0152.dcm File2: /home/fsuser/JM7965_3TSRT_0154.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0153.dcm File2: /home/fsuser/JM7965_3TSRT_0154.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0163.dcm File2: /home/fsuser/JM7965_3TSRT_0164.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0162.dcm File2: /home/fsuser/JM7965_3TSRT_0163.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0165.dcm File2: /home/fsuser/JM7965_3TSRT_0166.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0167.dcm File2: /home/fsuser/JM7965_3TSRT_0168.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0165.dcm File2: /home/fsuser/JM7965_3TSRT_0167.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0166.dcm File2: /home/fsuser/JM7965_3TSRT_0167.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0162.dcm File2: 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File1: /home/fsuser/JM7965_3TSRT_0173.dcm File2: /home/fsuser/JM7965_3TSRT_0174.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0175.dcm File2: /home/fsuser/JM7965_3TSRT_0176.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0173.dcm File2: /home/fsuser/JM7965_3TSRT_0175.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0174.dcm File2: /home/fsuser/JM7965_3TSRT_0175.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0169.dcm File2: /home/fsuser/JM7965_3TSRT_0173.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0170.dcm File2: /home/fsuser/JM7965_3TSRT_0173.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0171.dcm File2: /home/fsuser/JM7965_3TSRT_0173.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0172.dcm File2: /home/fsuser/JM7965_3TSRT_0173.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0162.dcm File2: /home/fsuser/JM7965_3TSRT_0169.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0163.dcm File2: /home/fsuser/JM7965_3TSRT_0169.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0164.dcm File2: /home/fsuser/JM7965_3TSRT_0169.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0165.dcm File2: /home/fsuser/JM7965_3TSRT_0169.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0166.dcm File2: /home/fsuser/JM7965_3TSRT_0169.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0167.dcm File2: 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File1: /home/fsuser/JM7965_3TSRT_0152.dcm File2: /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0153.dcm File2: /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0154.dcm File2: /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0155.dcm File2: /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0156.dcm File2: /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0157.dcm File2: /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0158.dcm File2: /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0159.dcm File2: /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0160.dcm File2: /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0161.dcm File2: /home/fsuser/JM7965_3TSRT_0162.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0118.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0119.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0120.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0121.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0122.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0123.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0124.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0125.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0126.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0127.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0128.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0129.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0130.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0131.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0132.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0133.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0134.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0135.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0136.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0137.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0138.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0139.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0140.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0141.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0142.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0143.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0144.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0145.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0146.dcm File2: /home/fsuser/JM7965_3TSRT_0147.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0178.dcm File2: /home/fsuser/JM7965_3TSRT_0179.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0177.dcm File2: /home/fsuser/JM7965_3TSRT_0178.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0180.dcm File2: /home/fsuser/JM7965_3TSRT_0181.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0182.dcm File2: /home/fsuser/JM7965_3TSRT_0183.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0180.dcm File2: /home/fsuser/JM7965_3TSRT_0182.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0181.dcm File2: /home/fsuser/JM7965_3TSRT_0182.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0177.dcm File2: /home/fsuser/JM7965_3TSRT_0180.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0178.dcm File2: /home/fsuser/JM7965_3TSRT_0180.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0179.dcm File2: /home/fsuser/JM7965_3TSRT_0180.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0185.dcm File2: /home/fsuser/JM7965_3TSRT_0186.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0184.dcm File2: /home/fsuser/JM7965_3TSRT_0185.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0187.dcm File2: /home/fsuser/JM7965_3TSRT_0188.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0189.dcm File2: /home/fsuser/JM7965_3TSRT_0190.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0187.dcm File2: /home/fsuser/JM7965_3TSRT_0189.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0188.dcm File2: /home/fsuser/JM7965_3TSRT_0189.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0184.dcm File2: /home/fsuser/JM7965_3TSRT_0187.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0185.dcm File2: /home/fsuser/JM7965_3TSRT_0187.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0186.dcm File2: /home/fsuser/JM7965_3TSRT_0187.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0177.dcm File2: /home/fsuser/JM7965_3TSRT_0184.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0178.dcm File2: /home/fsuser/JM7965_3TSRT_0184.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0179.dcm File2: /home/fsuser/JM7965_3TSRT_0184.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0180.dcm File2: /home/fsuser/JM7965_3TSRT_0184.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0181.dcm File2: /home/fsuser/JM7965_3TSRT_0184.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0182.dcm File2: /home/fsuser/JM7965_3TSRT_0184.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0183.dcm File2: /home/fsuser/JM7965_3TSRT_0184.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0192.dcm File2: /home/fsuser/JM7965_3TSRT_0193.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0191.dcm File2: /home/fsuser/JM7965_3TSRT_0192.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0194.dcm File2: /home/fsuser/JM7965_3TSRT_0195.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0196.dcm File2: /home/fsuser/JM7965_3TSRT_0197.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0194.dcm File2: /home/fsuser/JM7965_3TSRT_0196.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0195.dcm File2: /home/fsuser/JM7965_3TSRT_0196.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0191.dcm File2: /home/fsuser/JM7965_3TSRT_0194.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0192.dcm File2: /home/fsuser/JM7965_3TSRT_0194.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0193.dcm File2: /home/fsuser/JM7965_3TSRT_0194.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0198.dcm File2: /home/fsuser/JM7965_3TSRT_0199.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0200.dcm File2: /home/fsuser/JM7965_3TSRT_0201.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0198.dcm File2: /home/fsuser/JM7965_3TSRT_0200.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0199.dcm File2: /home/fsuser/JM7965_3TSRT_0200.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0202.dcm File2: /home/fsuser/JM7965_3TSRT_0203.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0204.dcm File2: /home/fsuser/JM7965_3TSRT_0205.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0202.dcm File2: /home/fsuser/JM7965_3TSRT_0204.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0203.dcm File2: /home/fsuser/JM7965_3TSRT_0204.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0198.dcm File2: /home/fsuser/JM7965_3TSRT_0202.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0199.dcm File2: /home/fsuser/JM7965_3TSRT_0202.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0200.dcm File2: /home/fsuser/JM7965_3TSRT_0202.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0201.dcm File2: /home/fsuser/JM7965_3TSRT_0202.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0191.dcm File2: /home/fsuser/JM7965_3TSRT_0198.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0192.dcm File2: /home/fsuser/JM7965_3TSRT_0198.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0193.dcm File2: /home/fsuser/JM7965_3TSRT_0198.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0194.dcm File2: /home/fsuser/JM7965_3TSRT_0198.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0195.dcm File2: /home/fsuser/JM7965_3TSRT_0198.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0196.dcm File2: /home/fsuser/JM7965_3TSRT_0198.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0197.dcm File2: /home/fsuser/JM7965_3TSRT_0198.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0177.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0178.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0179.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0180.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0181.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0182.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0183.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0184.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0185.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0186.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0187.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0188.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0189.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0190.dcm File2: /home/fsuser/JM7965_3TSRT_0191.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0207.dcm File2: /home/fsuser/JM7965_3TSRT_0208.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0206.dcm File2: /home/fsuser/JM7965_3TSRT_0207.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0209.dcm File2: /home/fsuser/JM7965_3TSRT_0210.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0211.dcm File2: /home/fsuser/JM7965_3TSRT_0212.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0209.dcm File2: /home/fsuser/JM7965_3TSRT_0211.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0210.dcm File2: /home/fsuser/JM7965_3TSRT_0211.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0206.dcm File2: /home/fsuser/JM7965_3TSRT_0209.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0207.dcm File2: /home/fsuser/JM7965_3TSRT_0209.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0208.dcm File2: /home/fsuser/JM7965_3TSRT_0209.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0213.dcm File2: /home/fsuser/JM7965_3TSRT_0214.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0215.dcm File2: /home/fsuser/JM7965_3TSRT_0216.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0213.dcm File2: /home/fsuser/JM7965_3TSRT_0215.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0214.dcm File2: /home/fsuser/JM7965_3TSRT_0215.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0217.dcm File2: /home/fsuser/JM7965_3TSRT_0218.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0219.dcm File2: /home/fsuser/JM7965_3TSRT_0220.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0217.dcm File2: /home/fsuser/JM7965_3TSRT_0219.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0218.dcm File2: /home/fsuser/JM7965_3TSRT_0219.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0213.dcm File2: /home/fsuser/JM7965_3TSRT_0217.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0214.dcm File2: /home/fsuser/JM7965_3TSRT_0217.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0215.dcm File2: /home/fsuser/JM7965_3TSRT_0217.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0216.dcm File2: /home/fsuser/JM7965_3TSRT_0217.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0206.dcm File2: /home/fsuser/JM7965_3TSRT_0213.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0207.dcm File2: /home/fsuser/JM7965_3TSRT_0213.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0208.dcm File2: /home/fsuser/JM7965_3TSRT_0213.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0209.dcm File2: /home/fsuser/JM7965_3TSRT_0213.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0210.dcm File2: /home/fsuser/JM7965_3TSRT_0213.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0211.dcm File2: /home/fsuser/JM7965_3TSRT_0213.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0212.dcm File2: /home/fsuser/JM7965_3TSRT_0213.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0222.dcm File2: /home/fsuser/JM7965_3TSRT_0223.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0221.dcm File2: /home/fsuser/JM7965_3TSRT_0222.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0224.dcm File2: /home/fsuser/JM7965_3TSRT_0225.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0226.dcm File2: /home/fsuser/JM7965_3TSRT_0227.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0224.dcm File2: /home/fsuser/JM7965_3TSRT_0226.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0225.dcm File2: /home/fsuser/JM7965_3TSRT_0226.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0221.dcm File2: /home/fsuser/JM7965_3TSRT_0224.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0222.dcm File2: /home/fsuser/JM7965_3TSRT_0224.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0223.dcm File2: /home/fsuser/JM7965_3TSRT_0224.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0228.dcm File2: /home/fsuser/JM7965_3TSRT_0229.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0230.dcm File2: /home/fsuser/JM7965_3TSRT_0231.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0228.dcm File2: /home/fsuser/JM7965_3TSRT_0230.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0229.dcm File2: /home/fsuser/JM7965_3TSRT_0230.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0232.dcm File2: /home/fsuser/JM7965_3TSRT_0233.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0234.dcm File2: /home/fsuser/JM7965_3TSRT_0235.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0232.dcm File2: /home/fsuser/JM7965_3TSRT_0234.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0233.dcm File2: /home/fsuser/JM7965_3TSRT_0234.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0228.dcm File2: /home/fsuser/JM7965_3TSRT_0232.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0229.dcm File2: /home/fsuser/JM7965_3TSRT_0232.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0230.dcm File2: /home/fsuser/JM7965_3TSRT_0232.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0231.dcm File2: /home/fsuser/JM7965_3TSRT_0232.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0221.dcm File2: /home/fsuser/JM7965_3TSRT_0228.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0222.dcm File2: /home/fsuser/JM7965_3TSRT_0228.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0223.dcm File2: /home/fsuser/JM7965_3TSRT_0228.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0224.dcm File2: /home/fsuser/JM7965_3TSRT_0228.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0225.dcm File2: /home/fsuser/JM7965_3TSRT_0228.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0226.dcm File2: /home/fsuser/JM7965_3TSRT_0228.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0227.dcm File2: /home/fsuser/JM7965_3TSRT_0228.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0206.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0207.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0208.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0209.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0210.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0211.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0212.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0213.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0214.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0215.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0216.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0217.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0218.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0219.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0220.dcm File2: /home/fsuser/JM7965_3TSRT_0221.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0177.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0178.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0179.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0180.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0181.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0182.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0183.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0184.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0185.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0186.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0187.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0188.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0189.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0190.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0191.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0192.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0193.dcm File2: 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File1: /home/fsuser/JM7965_3TSRT_0200.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0201.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0202.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0203.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0204.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0205.dcm File2: /home/fsuser/JM7965_3TSRT_0206.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0118.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0119.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0120.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0121.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0122.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0123.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0124.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0125.dcm File2: 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File1: /home/fsuser/JM7965_3TSRT_0132.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0133.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0134.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0135.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0136.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0137.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0138.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0139.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0140.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0141.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0142.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0143.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0144.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0145.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0146.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0147.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0148.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0149.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0150.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0151.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0152.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0153.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0154.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0155.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0156.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0157.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0158.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0159.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0160.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0161.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0162.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0163.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0164.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0165.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0166.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0167.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0168.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0169.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0170.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0171.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0172.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0173.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0174.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0175.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0176.dcm File2: /home/fsuser/JM7965_3TSRT_0177.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0001.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0002.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0003.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0004.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0005.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0006.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0007.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0008.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0009.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0010.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0011.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0012.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0013.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0014.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0015.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0016.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0017.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0018.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0019.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0020.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0021.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0022.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0023.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0024.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0025.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0026.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0027.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0028.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0029.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0030.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0031.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0032.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0033.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0034.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0035.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0036.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0037.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0038.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0039.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0040.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0041.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0042.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files 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/home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0050.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0051.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0052.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0053.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0054.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0055.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0056.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0057.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0058.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0059.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0060.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0061.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0062.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files 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/home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0070.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0071.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0072.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0073.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0074.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0075.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0076.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0077.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0078.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0079.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0080.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0081.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0082.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0083.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0084.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0085.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0086.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0087.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0088.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0089.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0090.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0091.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0092.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0093.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0094.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0095.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0096.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0097.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0098.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0099.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0100.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0101.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0102.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0103.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0104.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0105.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0106.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0107.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0108.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0109.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0110.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0111.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0112.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0113.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0114.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0115.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0116.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm WARNING: files are not found to be different and cannot be sorted File1: /home/fsuser/JM7965_3TSRT_0117.dcm File2: /home/fsuser/JM7965_3TSRT_0118.dcm Computing Slice Direction Vs: 0 0 0.625 Vs: 0 0 1 Second Sorting Counting frames nframes = 1 nslices = 235 ndcmfiles = 235 PE Dir = OTHER (dicom read) TransferSyntaxUID: --1.2.840.10008.1.2-- Loading pixel data TR=7.95, TE=3.67, TI=0.00, flip angle=8.00 i_ras = (-1, -0, 0) j_ras = (-0, -1, 0) k_ras = (-0, -0, 1) writing to /usr/local/freesurfer/subjects/jmcoreg/mri/orig/001.mgz... #-------------------------------------------- #@# MotionCor Tue Jul 26 15:05:24 EDT 2016 Found 1 runs /usr/local/freesurfer/subjects/jmcoreg/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue. cp /usr/local/freesurfer/subjects/jmcoreg/mri/orig/001.mgz /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz /usr/local/freesurfer/subjects/jmcoreg mri_convert /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz --conform mri_convert /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz --conform $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz... TR=7.95, TE=3.67, TI=0.00, flip angle=8.00 i_ras = (-1, -0, 0) j_ras = (-0, -1, 0) k_ras = (-0, -0, 1) Original Data has (0.488281, 0.488281, 0.625) mm size and (512, 512, 235) voxels. Data is conformed to 1 mm size and 256 voxels for all directions changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz... mri_add_xform_to_header -c /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/talairach.xfm /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz INFO: extension is mgz #-------------------------------------------- #@# Talairach Tue Jul 26 15:05:54 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Tue Jul 26 15:07:19 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.8025, pval=0.8469 >= threshold=0.0050) awk -f /usr/local/freesurfer/bin/extract_talairach_avi_QA.awk /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/talairach_avi.log tal_QC_AZS /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/talairach_avi.log TalAviQA: 0.95956 z-score: -4 #-------------------------------------------- #@# Nu Intensity Correction Tue Jul 26 15:07:19 EDT 2016 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 /usr/local/freesurfer/subjects/jmcoreg/mri /usr/local/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.18.2.1 2013/01/09 21:23:42 nicks Exp $ Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux Tue Jul 26 15:07:19 EDT 2016 Program nu_correct, built from: Package MNI N3, version 1.10, compiled by nicks@fishie (i686-pc-linux-gnu) on 2010-02-20 at 20:19:13 tmpdir is ./tmp.mri_nu_correct.mni.3537 /usr/local/freesurfer/subjects/jmcoreg/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.3537/nu0.mnc -odt float mri_convert orig.mgz ./tmp.mri_nu_correct.mni.3537/nu0.mnc -odt float $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from orig.mgz... TR=7.95, TE=3.67, TI=0.00, flip angle=8.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.3537/nu0.mnc... -------------------------------------------------------- Iteration 1 Tue Jul 26 15:07:21 EDT 2016 nu_correct -clobber ./tmp.mri_nu_correct.mni.3537/nu0.mnc ./tmp.mri_nu_correct.mni.3537/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.3537/0/ [fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/jmcoreg/mri/] [2016-07-26 15:07:21] running: /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.3537/0/ ./tmp.mri_nu_correct.mni.3537/nu0.mnc ./tmp.mri_nu_correct.mni.3537/nu1.imp Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Number of iterations: 39 CV of field change: 0.000939138 [fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/jmcoreg/mri/] [2016-07-26 15:07:42] running: /usr/local/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.3537/nu0.mnc ./tmp.mri_nu_correct.mni.3537/0//template.mnc Transforming slices:......................................................................................Done Transforming slices:................................................................................................................................................................................................................................................................Done -------------------------------------------------------- Iteration 2 Tue Jul 26 15:07:46 EDT 2016 nu_correct -clobber ./tmp.mri_nu_correct.mni.3537/nu1.mnc ./tmp.mri_nu_correct.mni.3537/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.3537/1/ [fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/jmcoreg/mri/] [2016-07-26 15:07:46] running: /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.3537/1/ ./tmp.mri_nu_correct.mni.3537/nu1.mnc ./tmp.mri_nu_correct.mni.3537/nu2.imp Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Use of ?PATTERN? without explicit operator is deprecated at /usr/local/freesurfer/mni/bin/sharpen_volume line 153. Processing:.................................................................Done Number of iterations: 17 CV of field change: 0.000931733 [fsuser@xubuntu-VirtualBox:/usr/local/freesurfer/subjects/jmcoreg/mri/] [2016-07-26 15:07:56] running: /usr/local/freesurfer/mni/bin/make_template -quiet -shrink 3 ./tmp.mri_nu_correct.mni.3537/nu1.mnc ./tmp.mri_nu_correct.mni.3537/1//template.mnc Transforming slices:......................................................................................Done Transforming slices:................................................................................................................................................................................................................................................................Done mri_binarize --i ./tmp.mri_nu_correct.mni.3537/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.3537/ones.mgz $Id: mri_binarize.c,v 1.26.2.1 2011/04/08 15:40:50 greve Exp $ cwd /usr/local/freesurfer/subjects/jmcoreg/mri cmdline mri_binarize --i ./tmp.mri_nu_correct.mni.3537/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.3537/ones.mgz sysname Linux hostname xubuntu-VirtualBox machine i686 user fsuser input ./tmp.mri_nu_correct.mni.3537/nu2.mnc frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.3537/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 Found 16777216 values in range Counting number of voxels Found 16777216 voxels in final mask mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3537/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.3537/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3537/input.mean.dat $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3537/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.3537/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3537/input.mean.dat sysname Linux hostname xubuntu-VirtualBox machine i686 user fsuser UseRobust 0 Loading ./tmp.mri_nu_correct.mni.3537/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 16777216 16777216.000 Reporting on 1 segmentations Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.3537/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3537/ones.mgz --i ./tmp.mri_nu_correct.mni.3537/nu2.mnc --sum ./tmp.mri_nu_correct.mni.3537/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3537/output.mean.dat $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.3537/ones.mgz --i ./tmp.mri_nu_correct.mni.3537/nu2.mnc --sum ./tmp.mri_nu_correct.mni.3537/sum.junk --avgwf ./tmp.mri_nu_correct.mni.3537/output.mean.dat sysname Linux hostname xubuntu-VirtualBox machine i686 user fsuser UseRobust 0 Loading ./tmp.mri_nu_correct.mni.3537/ones.mgz Loading ./tmp.mri_nu_correct.mni.3537/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation 0 1 16777216 16777216.000 Reporting on 1 segmentations Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.3537/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.3537/nu2.mnc ./tmp.mri_nu_correct.mni.3537/nu2.mnc mul .99048498540591349087 Saving result to './tmp.mri_nu_correct.mni.3537/nu2.mnc' (type = MINC ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.3537/nu2.mnc nu.mgz --like orig.mgz mri_convert ./tmp.mri_nu_correct.mni.3537/nu2.mnc nu.mgz --like orig.mgz $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.3537/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 7 seconds. mapping (19, 97) to ( 3, 110) Tue Jul 26 15:08:34 EDT 2016 mri_nu_correct.mni done mri_add_xform_to_header -c /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Tue Jul 26 15:08:35 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri mri_normalize -g 1 nu.mgz T1.mgz using max gradient = 1.000 reading from nu.mgz... normalizing image... talairach transform 1.148 0.006 -0.028 7.864; 0.030 1.228 0.167 -11.499; -0.007 -0.111 1.293 -26.558; 0.000 0.000 0.000 1.000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 13 Starting OpenSpline(): npoints = 13 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 83 (83), valley at 56 (56) csf peak at 18, setting threshold to 61 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 111 white matter peak found at 110 gm peak at 84 (84), valley at 36 (36) csf peak at 18, setting threshold to 62 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 2 minutes and 30 seconds. #-------------------------------------------- #@# Skull Stripping Tue Jul 26 15:11:06 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri mri_em_register -skull nu.mgz /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 reading 1 input volumes... logging results to talairach_with_skull.log reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=13.0 skull bounding box = (50, 62, 24) --> (214, 200, 218) using (105, 108, 121) as brain centroid... mean wm in atlas = 126, using box (85,91,97) --> (125, 124,144) to find MRI wm before smoothing, mri peak at 104 after smoothing, mri peak at 103, scaling input intensities by 1.223 scaling channel 0 by 1.2233 initial log_p = -4.9 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.602268 @ (-9.091, -27.273, -9.091) max log p = -4.602268 @ (0.000, 0.000, 0.000) max log p = -4.602268 @ (0.000, 0.000, 0.000) max log p = -4.582937 @ (-1.136, -5.682, -1.136) max log p = -4.579210 @ (1.705, 0.568, 0.568) max log p = -4.579210 @ (0.000, 0.000, 0.000) Found translation: (-8.5, -32.4, -9.7): log p = -4.579 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.6 (thresh=-4.6) 1.064 0.000 0.000 -17.083; 0.000 1.226 0.161 -69.709; 0.000 -0.139 1.055 7.142; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.3 (thresh=-4.3) 1.064 0.000 0.000 -17.083; 0.000 1.226 0.161 -69.709; 0.000 -0.139 1.055 7.142; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.3 (thresh=-4.3) 1.041 -0.074 -0.044 1.370; 0.068 1.201 0.154 -76.337; 0.036 -0.139 1.074 0.155; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.043 -0.041 0.030 -10.105; 0.033 1.207 0.117 -68.362; -0.030 -0.093 1.059 4.075; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.043 -0.041 0.030 -10.105; 0.033 1.207 0.117 -68.362; -0.030 -0.093 1.059 4.075; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.046 -0.051 0.030 -9.492; 0.041 1.210 0.118 -70.138; -0.030 -0.093 1.063 3.716; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.046 -0.051 0.030 -9.492; 0.041 1.210 0.118 -70.138; -0.030 -0.093 1.063 3.716; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3481 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.04625 -0.05111 0.02958 -9.49176; 0.04149 1.21045 0.11807 -70.13772; -0.02996 -0.09284 1.06271 3.71645; 0.00000 0.00000 0.00000 1.00000; nsamples 3481 Quasinewton: input matrix 1.04625 -0.05111 0.02958 -9.49176; 0.04149 1.21045 0.11807 -70.13772; -0.02996 -0.09284 1.06271 3.71645; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 009: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.046 -0.051 0.030 -9.492; 0.041 1.210 0.118 -70.138; -0.030 -0.093 1.063 3.716; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -4.2 (old=-4.9) transform before final EM align: 1.046 -0.051 0.030 -9.492; 0.041 1.210 0.118 -70.138; -0.030 -0.093 1.063 3.716; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 382743 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.04625 -0.05111 0.02958 -9.49176; 0.04149 1.21045 0.11807 -70.13772; -0.02996 -0.09284 1.06271 3.71645; 0.00000 0.00000 0.00000 1.00000; nsamples 382743 Quasinewton: input matrix 1.04625 -0.05111 0.02958 -9.49176; 0.04149 1.21045 0.11807 -70.13772; -0.02996 -0.09284 1.06271 3.71645; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 011: -log(p) = 4.6 tol 0.000000 final transform: 1.046 -0.051 0.030 -9.492; 0.041 1.210 0.118 -70.138; -0.030 -0.093 1.063 3.716; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull.lta... registration took 25 minutes and 26 seconds. mri_watershed -T1 -brain_atlas /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=133 y=138 z=113 r=67 first estimation of the main basin volume: 1293178 voxels Looking for seedpoints 2 found in the cerebellum 17 found in the rest of the brain global maximum in x=113, y=123, z=82, Imax=255 CSF=22, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=-1748677649 voxels, voxel volume =1.000 = 2546289647 mmm3 = 2546289.664 cm3 done. PostAnalyze...Basin Prior 193 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=133,y=138, z=112, r=9258 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = 43146 RIGHT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = -2147481182 LEFT_CER CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 2538 RIGHT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = -1216444324 LEFT_BRAIN CSF_MIN=1, CSF_intensity=2, CSF_MAX=4 , nb = -1077560132 OTHER CSF_MIN=1, CSF_intensity=2, CSF_MAX=3 , nb = 804540128 CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 4, 7, 55, 80 after analyzing : 4, 39, 55, 49 RIGHT_CER before analyzing : 3, 5, 64, 87 after analyzing : 3, 44, 64, 54 LEFT_CER before analyzing : 3, 5, 67, 91 after analyzing : 3, 46, 67, 57 RIGHT_BRAIN before analyzing : 4, 7, 54, 81 after analyzing : 4, 38, 54, 48 LEFT_BRAIN before analyzing : 4, 7, 55, 79 after analyzing : 4, 39, 55, 49 OTHER before analyzing : 3, 4, 48, 92 after analyzing : 3, 33, 48, 47 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...57 iterations *********************VALIDATION********************* curvature mean = -0.014, std = 0.010 curvature mean = 68.871, std = 6.895 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 3.12, sigma = 4.83 after rotation: sse = 3.12, sigma = 4.83 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 3.18, its var is 3.95 before Erosion-Dilatation 0.19% of inacurate vertices after Erosion-Dilatation 0.00% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...37 iterations mri_strip_skull: done peeling brain Brain Size = 1504429 voxels, voxel volume = 1.000 mm3 = 1504429 mmm3 = 1504.429 cm3 ****************************** Saving brainmask.auto.mgz done cp brainmask.auto.mgz brainmask.mgz #------------------------------------- #@# EM Registration Tue Jul 26 15:36:54 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri mri_em_register -uns 3 -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log reading '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... average std = 6.9 using min determinant for regularization = 4.7 0 singular and 1812 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 14.9 or > 790.2 total sample mean = 84.4 (994 zeros) ************************************************ spacing=8, using 2772 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2772, passno 0, spacing 8 resetting wm mean[0]: 102 --> 107 resetting gm mean[0]: 64 --> 64 input volume #1 is the most T1-like using real data threshold=14.0 skull bounding box = (66, 78, 37) --> (199, 200, 200) using (110, 119, 119) as brain centroid... mean wm in atlas = 107, using box (94,104,99) --> (126, 133,139) to find MRI wm before smoothing, mri peak at 106 after smoothing, mri peak at 105, scaling input intensities by 1.019 scaling channel 0 by 1.01905 initial log_p = -4.6 ************************************************ First Search limited to translation only. ************************************************ max log p = -3.918804 @ (-9.091, -27.273, -9.091) max log p = -3.918804 @ (0.000, 0.000, 0.000) max log p = -3.908406 @ (-2.273, -2.273, 2.273) max log p = -3.878692 @ (1.136, 5.682, 3.409) max log p = -3.869436 @ (1.705, -0.568, 1.705) max log p = -3.869436 @ (0.000, 0.000, 0.000) Found translation: (-8.5, -24.4, -1.7): log p = -3.869 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.6, old_max_log_p =-3.9 (thresh=-3.9) 1.075 0.000 0.000 -18.673; 0.000 1.135 0.169 -61.880; 0.000 -0.120 1.071 0.363; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.6, old_max_log_p =-3.6 (thresh=-3.6) 1.075 0.000 0.000 -18.673; 0.000 1.135 0.169 -61.880; 0.000 -0.111 0.991 8.235; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.6, old_max_log_p =-3.6 (thresh=-3.6) 1.075 0.000 0.000 -18.673; 0.000 1.135 0.169 -61.880; 0.000 -0.111 0.991 8.235; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.6, old_max_log_p =-3.6 (thresh=-3.6) 1.074 -0.036 -0.037 -9.137; 0.034 1.158 0.137 -64.267; 0.036 -0.077 1.014 -2.258; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.6, old_max_log_p =-3.6 (thresh=-3.6) 1.054 -0.039 -0.004 -9.776; 0.036 1.155 0.170 -67.689; -0.000 -0.115 1.028 6.475; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 5 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.5, old_max_log_p =-3.6 (thresh=-3.5) 1.054 -0.039 -0.004 -9.776; 0.036 1.177 0.173 -71.187; -0.000 -0.117 1.048 4.621; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 6 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.5, old_max_log_p =-3.5 (thresh=-3.5) 1.054 -0.039 -0.004 -9.776; 0.036 1.177 0.173 -71.187; -0.000 -0.117 1.048 4.621; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.5, old_max_log_p =-3.5 (thresh=-3.5) 1.054 -0.049 -0.005 -8.206; 0.045 1.178 0.173 -72.971; -0.000 -0.118 1.049 3.552; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 8 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.5, old_max_log_p =-3.5 (thresh=-3.5) 1.054 -0.049 -0.005 -8.206; 0.045 1.178 0.173 -72.971; -0.000 -0.117 1.048 3.671; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2772 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.05393 -0.04880 -0.00547 -8.20587; 0.04497 1.17771 0.17309 -72.97125; -0.00049 -0.11745 1.04778 3.67117; 0.00000 0.00000 0.00000 1.00000; nsamples 2772 Quasinewton: input matrix 1.05393 -0.04880 -0.00547 -8.20587; 0.04497 1.17771 0.17309 -72.97125; -0.00049 -0.11745 1.04778 3.67117; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 011: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.054 -0.049 -0.005 -8.206; 0.045 1.178 0.173 -72.971; -0.000 -0.117 1.048 3.671; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -3.5 (old=-4.6) transform before final EM align: 1.054 -0.049 -0.005 -8.206; 0.045 1.178 0.173 -72.971; -0.000 -0.117 1.048 3.671; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 312841 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.05393 -0.04880 -0.00547 -8.20587; 0.04497 1.17771 0.17309 -72.97125; -0.00049 -0.11745 1.04778 3.67117; 0.00000 0.00000 0.00000 1.00000; nsamples 312841 Quasinewton: input matrix 1.05393 -0.04880 -0.00547 -8.20587; 0.04497 1.17771 0.17309 -72.97125; -0.00049 -0.11745 1.04778 3.67117; 0.00000 0.00000 0.00000 1.00000; dfp_em_step_func: 012: -log(p) = 4.0 after pass:transform: ( 1.05, -0.05, -0.01, -8.21) ( 0.04, 1.18, 0.17, -72.97) ( -0.00, -0.12, 1.05, 3.67) dfp_em_step_func: 013: -log(p) = 4.0 after pass:transform: ( 1.05, -0.05, -0.01, -8.21) ( 0.04, 1.18, 0.17, -72.97) ( -0.00, -0.12, 1.05, 3.67) pass 2 through quasi-newton minimization... outof QuasiNewtonEMA: 015: -log(p) = 4.0 tol 0.000000 final transform: 1.054 -0.049 -0.005 -8.206; 0.045 1.178 0.173 -72.971; -0.000 -0.117 1.048 3.671; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach.lta... registration took 26 minutes and 25 seconds. #-------------------------------------- #@# CA Normalize Tue Jul 26 16:03:19 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 102 --> 107 resetting gm mean[0]: 64 --> 64 input volume #1 is the most T1-like using real data threshold=14.0 skull bounding box = (66, 78, 37) --> (199, 200, 200) using (110, 119, 119) as brain centroid... mean wm in atlas = 107, using box (94,104,99) --> (126, 133,139) to find MRI wm before smoothing, mri peak at 106 after smoothing, mri peak at 105, scaling input intensities by 1.019 scaling channel 0 by 1.01905 using 244171 sample points... INFO: compute sample coordinates transform 1.054 -0.049 -0.005 -8.206; 0.045 1.178 0.173 -72.971; -0.000 -0.117 1.048 3.671; 0.000 0.000 0.000 1.000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (133, 84, 39) --> (198, 180, 197) Left_Cerebral_White_Matter: limiting intensities to 96.0 --> 255.0 0 of 1427 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (73, 87, 39) --> (135, 183, 197) Right_Cerebral_White_Matter: limiting intensities to 97.0 --> 255.0 2 of 1388 (0.1%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (137, 158, 63) --> (184, 195, 114) Left_Cerebellum_White_Matter: limiting intensities to 97.0 --> 255.0 0 of 70 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (93, 158, 61) --> (136, 196, 114) Right_Cerebellum_White_Matter: limiting intensities to 97.0 --> 255.0 0 of 58 (0.0%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (120, 151, 96) --> (151, 210, 125) Brain_Stem: limiting intensities to 95.0 --> 255.0 0 of 143 (0.0%) samples deleted using 3086 total control points for intensity normalization... bias field = 0.988 +- 0.060 4 of 3084 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (133, 84, 39) --> (198, 180, 197) Left_Cerebral_White_Matter: limiting intensities to 95.0 --> 255.0 0 of 1464 (0.0%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (73, 87, 39) --> (135, 183, 197) Right_Cerebral_White_Matter: limiting intensities to 94.0 --> 255.0 4 of 1515 (0.3%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (137, 158, 63) --> (184, 195, 114) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 255.0 4 of 88 (4.5%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (93, 158, 61) --> (136, 196, 114) Right_Cerebellum_White_Matter: limiting intensities to 86.0 --> 255.0 0 of 70 (0.0%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (120, 151, 96) --> (151, 210, 125) Brain_Stem: limiting intensities to 83.0 --> 255.0 0 of 188 (0.0%) samples deleted using 3325 total control points for intensity normalization... bias field = 1.008 +- 0.046 16 of 3317 control points discarded finding control points in Left_Cerebral_White_Matter.... found 41584 control points for structure... bounding box (133, 84, 39) --> (198, 180, 197) Left_Cerebral_White_Matter: limiting intensities to 94.0 --> 255.0 4 of 1523 (0.3%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 40735 control points for structure... bounding box (73, 87, 39) --> (135, 183, 197) Right_Cerebral_White_Matter: limiting intensities to 95.0 --> 255.0 1 of 1542 (0.1%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3012 control points for structure... bounding box (137, 158, 63) --> (184, 195, 114) Left_Cerebellum_White_Matter: limiting intensities to 85.0 --> 255.0 0 of 101 (0.0%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2764 control points for structure... bounding box (93, 158, 61) --> (136, 196, 114) Right_Cerebellum_White_Matter: limiting intensities to 83.0 --> 255.0 0 of 82 (0.0%) samples deleted finding control points in Brain_Stem.... found 3520 control points for structure... bounding box (120, 151, 96) --> (151, 210, 125) Brain_Stem: limiting intensities to 78.0 --> 255.0 0 of 241 (0.0%) samples deleted using 3489 total control points for intensity normalization... bias field = 1.005 +- 0.038 14 of 3484 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 1 minutes and 45 seconds. #-------------------------------------- #@# CA Reg Tue Jul 26 16:05:04 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri mri_ca_register -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /usr/local/freesurfer/average/RB_all_2008-03-26.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... label assignment complete, 0 changed (0.00%) det(m_affine) = 1.32 (predicted orig area = 6.0) label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.039 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.946, neg=0, invalid=96777 0001: dt=129.472000, rms=0.895 (5.353%), neg=0, invalid=96777 0002: dt=295.936000, rms=0.855 (4.437%), neg=0, invalid=96777 0003: dt=92.480000, rms=0.844 (1.331%), neg=0, invalid=96777 0004: dt=517.888000, rms=0.827 (1.978%), neg=0, invalid=96777 0005: dt=73.984000, rms=0.825 (0.231%), neg=0, invalid=96777 0006: dt=73.984000, rms=0.823 (0.276%), neg=0, invalid=96777 0007: dt=73.984000, rms=0.820 (0.399%), neg=0, invalid=96777 0008: dt=73.984000, rms=0.816 (0.453%), neg=0, invalid=96777 0009: dt=73.984000, rms=0.812 (0.486%), neg=0, invalid=96777 0010: dt=73.984000, rms=0.808 (0.453%), neg=0, invalid=96777 0011: dt=73.984000, rms=0.805 (0.357%), neg=0, invalid=96777 0012: dt=73.984000, rms=0.803 (0.256%), neg=0, invalid=96777 0013: dt=73.984000, rms=0.801 (0.267%), neg=0, invalid=96777 0014: dt=73.984000, rms=0.798 (0.438%), neg=0, invalid=96777 0015: dt=73.984000, rms=0.794 (0.507%), neg=0, invalid=96777 0016: dt=73.984000, rms=0.791 (0.337%), neg=0, invalid=96777 0017: dt=73.984000, rms=0.789 (0.190%), neg=0, invalid=96777 0018: dt=73.984000, rms=0.789 (0.095%), neg=0, invalid=96777 0019: dt=73.984000, rms=0.787 (0.166%), neg=0, invalid=96777 0020: dt=73.984000, rms=0.784 (0.382%), neg=0, invalid=96777 0021: dt=73.984000, rms=0.783 (0.173%), neg=0, invalid=96777 0022: dt=73.984000, rms=0.783 (-0.012%), neg=0, invalid=96777 0023: dt=0.000000, rms=0.783 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.783, neg=0, invalid=96777 0024: dt=129.472000, rms=0.781 (0.253%), neg=0, invalid=96777 0025: dt=517.888000, rms=0.779 (0.275%), neg=0, invalid=96777 0026: dt=92.480000, rms=0.779 (0.043%), neg=0, invalid=96777 0027: dt=92.480000, rms=0.778 (0.095%), neg=0, invalid=96777 0028: dt=92.480000, rms=0.777 (0.134%), neg=0, invalid=96777 0029: dt=92.480000, rms=0.776 (0.135%), neg=0, invalid=96777 0030: dt=92.480000, rms=0.775 (0.110%), neg=0, invalid=96777 0031: dt=92.480000, rms=0.774 (0.126%), neg=0, invalid=96777 0032: dt=92.480000, rms=0.773 (0.159%), neg=0, invalid=96777 0033: dt=92.480000, rms=0.771 (0.168%), neg=0, invalid=96777 0034: dt=92.480000, rms=0.770 (0.123%), neg=0, invalid=96777 0035: dt=92.480000, rms=0.770 (0.080%), neg=0, invalid=96777 0036: dt=517.888000, rms=0.768 (0.280%), neg=0, invalid=96777 0037: dt=0.000000, rms=0.768 (-0.003%), neg=0, invalid=96777 0038: dt=0.850000, rms=0.768 (-0.000%), neg=0, invalid=96777 setting smoothness coefficient to 0.154 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.773, neg=0, invalid=96777 0039: dt=20.736000, rms=0.771 (0.210%), neg=0, invalid=96777 0040: dt=124.416000, rms=0.764 (0.915%), neg=0, invalid=96777 0041: dt=124.416000, rms=0.752 (1.629%), neg=0, invalid=96777 0042: dt=36.288000, rms=0.748 (0.530%), neg=0, invalid=96777 0043: dt=62.208000, rms=0.745 (0.328%), neg=0, invalid=96777 0044: dt=36.288000, rms=0.743 (0.323%), neg=0, invalid=96777 0045: dt=124.416000, rms=0.739 (0.509%), neg=0, invalid=96777 0046: dt=15.552000, rms=0.738 (0.120%), neg=0, invalid=96777 0047: dt=15.552000, rms=0.737 (0.172%), neg=0, invalid=96777 0048: dt=15.552000, rms=0.736 (0.155%), neg=0, invalid=96777 0049: dt=15.552000, rms=0.736 (0.036%), neg=0, invalid=96777 0050: dt=15.552000, rms=0.735 (0.119%), neg=0, invalid=96777 0051: dt=15.552000, rms=0.733 (0.280%), neg=0, invalid=96777 0052: dt=15.552000, rms=0.730 (0.408%), neg=0, invalid=96777 0053: dt=15.552000, rms=0.727 (0.350%), neg=0, invalid=96777 0054: dt=15.552000, rms=0.726 (0.184%), neg=0, invalid=96777 0055: dt=15.552000, rms=0.724 (0.202%), neg=0, invalid=96777 0056: dt=15.552000, rms=0.723 (0.240%), neg=0, invalid=96777 0057: dt=15.552000, rms=0.721 (0.272%), neg=0, invalid=96777 0058: dt=15.552000, rms=0.720 (0.128%), neg=0, invalid=96777 0059: dt=15.552000, rms=0.719 (0.068%), neg=0, invalid=96777 0060: dt=15.552000, rms=0.718 (0.200%), neg=0, invalid=96777 0061: dt=15.552000, rms=0.716 (0.285%), neg=0, invalid=96777 0062: dt=15.552000, rms=0.714 (0.255%), neg=0, invalid=96777 0063: dt=15.552000, rms=0.713 (0.139%), neg=0, invalid=96777 0064: dt=15.552000, rms=0.712 (0.146%), neg=0, invalid=96777 0065: dt=15.552000, rms=0.711 (0.134%), neg=0, invalid=96777 0066: dt=15.552000, rms=0.711 (0.051%), neg=0, invalid=96777 0067: dt=15.552000, rms=0.710 (0.040%), neg=0, invalid=96777 0068: dt=25.920000, rms=0.710 (0.058%), neg=0, invalid=96777 0069: dt=103.680000, rms=0.709 (0.082%), neg=0, invalid=96777 0070: dt=36.288000, rms=0.709 (0.031%), neg=0, invalid=96777 0071: dt=36.288000, rms=0.709 (0.047%), neg=0, invalid=96777 0072: dt=36.288000, rms=0.709 (0.038%), neg=0, invalid=96777 0073: dt=36.288000, rms=0.708 (0.035%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.708, neg=0, invalid=96777 0074: dt=20.736000, rms=0.708 (0.106%), neg=0, invalid=96777 0075: dt=36.288000, rms=0.707 (0.045%), neg=0, invalid=96777 0076: dt=36.288000, rms=0.707 (0.078%), neg=0, invalid=96777 0077: dt=36.288000, rms=0.706 (0.044%), neg=0, invalid=96777 0078: dt=36.288000, rms=0.706 (0.028%), neg=0, invalid=96777 setting smoothness coefficient to 0.588 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.736, neg=0, invalid=96777 0079: dt=9.600000, rms=0.734 (0.283%), neg=0, invalid=96777 0080: dt=11.200000, rms=0.732 (0.203%), neg=0, invalid=96777 0081: dt=11.200000, rms=0.731 (0.137%), neg=0, invalid=96777 0082: dt=11.200000, rms=0.730 (0.162%), neg=0, invalid=96777 0083: dt=11.200000, rms=0.730 (0.046%), neg=0, invalid=96777 0084: dt=11.200000, rms=0.729 (0.087%), neg=0, invalid=96777 0085: dt=11.200000, rms=0.727 (0.374%), neg=0, invalid=96777 0086: dt=11.200000, rms=0.722 (0.604%), neg=0, invalid=96777 0087: dt=11.200000, rms=0.718 (0.639%), neg=0, invalid=96777 0088: dt=11.200000, rms=0.714 (0.493%), neg=0, invalid=96777 0089: dt=11.200000, rms=0.714 (-0.122%), neg=0, invalid=96777 0090: dt=0.000000, rms=0.714 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.714, neg=0, invalid=96777 0091: dt=0.000000, rms=0.714 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.763, neg=0, invalid=96777 0092: dt=0.000000, rms=0.763 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.763, neg=0, invalid=96777 0093: dt=0.000000, rms=0.763 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 5.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.859, neg=0, invalid=96777 0094: dt=0.726257, rms=0.847 (1.377%), neg=0, invalid=96777 0095: dt=0.683824, rms=0.843 (0.492%), neg=0, invalid=96777 0096: dt=0.839695, rms=0.842 (0.144%), neg=0, invalid=96777 0097: dt=0.839695, rms=0.841 (0.101%), neg=0, invalid=96777 0098: dt=0.839695, rms=0.841 (-0.043%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.841, neg=0, invalid=96777 0099: dt=1.536000, rms=0.837 (0.508%), neg=0, invalid=96777 0100: dt=0.000000, rms=0.837 (0.000%), neg=0, invalid=96777 0101: dt=0.100000, rms=0.837 (-0.007%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 10.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.776, neg=0, invalid=96777 0102: dt=0.020000, rms=0.774 (0.222%), neg=0, invalid=96777 0103: dt=0.112000, rms=0.766 (1.032%), neg=0, invalid=96777 0104: dt=0.028000, rms=0.766 (0.055%), neg=0, invalid=96777 0105: dt=0.028000, rms=0.765 (0.056%), neg=0, invalid=96777 0106: dt=0.028000, rms=0.765 (0.102%), neg=0, invalid=96777 0107: dt=0.014000, rms=0.765 (0.026%), neg=0, invalid=96777 0108: dt=0.014000, rms=0.764 (0.025%), neg=0, invalid=96777 0109: dt=0.100357, rms=0.763 (0.173%), neg=0, invalid=96777 0110: dt=0.028000, rms=0.763 (0.040%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.763, neg=0, invalid=96777 0111: dt=0.028000, rms=0.762 (0.142%), neg=0, invalid=96777 0112: dt=0.028000, rms=0.761 (0.106%), neg=0, invalid=96777 0113: dt=0.028000, rms=0.760 (0.079%), neg=0, invalid=96777 0114: dt=0.028000, rms=0.760 (0.061%), neg=0, invalid=96777 0115: dt=0.028000, rms=0.759 (0.050%), neg=0, invalid=96777 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.11725 (24) mri peak = 0.17390 (20) Left_Lateral_Ventricle (4): linear fit = 0.69 x + 0.0 (2248 voxels, overlap=0.005) Left_Lateral_Ventricle (4): linear fit = 0.69 x + 0.0 (2248 voxels, peak = 16), gca=16.4 gca peak = 0.14022 (22) mri peak = 0.20914 (20) Right_Lateral_Ventricle (43): linear fit = 0.71 x + 0.0 (1108 voxels, overlap=0.088) Right_Lateral_Ventricle (43): linear fit = 0.71 x + 0.0 (1108 voxels, peak = 16), gca=15.7 gca peak = 0.24234 (100) mri peak = 0.10874 (100) Right_Pallidum (52): linear fit = 1.01 x + 0.0 (469 voxels, overlap=0.779) Right_Pallidum (52): linear fit = 1.01 x + 0.0 (469 voxels, peak = 102), gca=101.5 gca peak = 0.19192 (97) mri peak = 0.12235 (101) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (448 voxels, overlap=0.692) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (448 voxels, peak = 101), gca=101.4 gca peak = 0.24007 (63) mri peak = 0.07625 (72) Right_Hippocampus (53): linear fit = 1.13 x + 0.0 (740 voxels, overlap=0.412) Right_Hippocampus (53): linear fit = 1.13 x + 0.0 (740 voxels, peak = 72), gca=71.5 gca peak = 0.29892 (64) mri peak = 0.07454 (76) Left_Hippocampus (17): linear fit = 1.09 x + 0.0 (739 voxels, overlap=0.295) Left_Hippocampus (17): linear fit = 1.09 x + 0.0 (739 voxels, peak = 69), gca=69.4 gca peak = 0.12541 (104) mri peak = 0.08616 (108) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (71705 voxels, overlap=0.812) Right_Cerebral_White_Matter (41): linear fit = 1.03 x + 0.0 (71705 voxels, peak = 108), gca=107.6 gca peak = 0.13686 (104) mri peak = 0.06864 (107) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (79408 voxels, overlap=0.824) Left_Cerebral_White_Matter (2): linear fit = 1.03 x + 0.0 (79408 voxels, peak = 108), gca=107.6 gca peak = 0.11691 (63) mri peak = 0.03541 (84) Left_Cerebral_Cortex (3): linear fit = 1.29 x + 0.0 (34422 voxels, overlap=0.022) Left_Cerebral_Cortex (3): linear fit = 1.29 x + 0.0 (34422 voxels, peak = 82), gca=81.6 gca peak = 0.13270 (63) mri peak = 0.03643 (79) Right_Cerebral_Cortex (42): linear fit = 1.25 x + 0.0 (38784 voxels, overlap=0.004) Right_Cerebral_Cortex (42): linear fit = 1.25 x + 0.0 (38784 voxels, peak = 78), gca=78.4 gca peak = 0.15182 (70) mri peak = 0.10714 (92) Right_Caudate (50): linear fit = 1.30 x + 0.0 (449 voxels, overlap=0.019) Right_Caudate (50): linear fit = 1.30 x + 0.0 (449 voxels, peak = 91), gca=91.3 gca peak = 0.14251 (76) mri peak = 0.12248 (92) Left_Caudate (11): linear fit = 1.16 x + 0.0 (651 voxels, overlap=0.063) Left_Caudate (11): linear fit = 1.16 x + 0.0 (651 voxels, peak = 89), gca=88.5 gca peak = 0.12116 (60) mri peak = 0.05873 (77) Left_Cerebellum_Cortex (8): linear fit = 1.28 x + 0.0 (15242 voxels, overlap=0.001) Left_Cerebellum_Cortex (8): linear fit = 1.28 x + 0.0 (15242 voxels, peak = 77), gca=77.1 gca peak = 0.12723 (61) mri peak = 0.04905 (75) Right_Cerebellum_Cortex (47): linear fit = 1.25 x + 0.0 (20732 voxels, overlap=0.007) Right_Cerebellum_Cortex (47): linear fit = 1.25 x + 0.0 (20732 voxels, peak = 76), gca=75.9 gca peak = 0.22684 (88) mri peak = 0.07075 (93) Left_Cerebellum_White_Matter (7): linear fit = 1.09 x + 0.0 (8742 voxels, overlap=0.583) Left_Cerebellum_White_Matter (7): linear fit = 1.09 x + 0.0 (8742 voxels, peak = 95), gca=95.5 gca peak = 0.21067 (87) mri peak = 0.08885 (91) Right_Cerebellum_White_Matter (46): linear fit = 1.04 x + 0.0 (7107 voxels, overlap=0.731) Right_Cerebellum_White_Matter (46): linear fit = 1.04 x + 0.0 (7107 voxels, peak = 91), gca=90.9 gca peak = 0.25455 (62) mri peak = 0.08906 (75) Left_Amygdala (18): linear fit = 1.13 x + 0.0 (389 voxels, overlap=0.874) Left_Amygdala (18): linear fit = 1.13 x + 0.0 (389 voxels, peak = 70), gca=70.4 gca peak = 0.39668 (62) mri peak = 0.16000 (70) Right_Amygdala (54): linear fit = 1.11 x + 0.0 (223 voxels, overlap=0.400) Right_Amygdala (54): linear fit = 1.11 x + 0.0 (223 voxels, peak = 69), gca=68.5 gca peak = 0.10129 (93) mri peak = 0.07850 (104) Left_Thalamus_Proper (10): linear fit = 1.12 x + 0.0 (4982 voxels, overlap=0.323) Left_Thalamus_Proper (10): linear fit = 1.12 x + 0.0 (4982 voxels, peak = 105), gca=104.6 gca peak = 0.12071 (89) mri peak = 0.06578 (103) Right_Thalamus_Proper (49): linear fit = 1.14 x + 0.0 (3424 voxels, overlap=0.358) Right_Thalamus_Proper (49): linear fit = 1.14 x + 0.0 (3424 voxels, peak = 102), gca=101.9 gca peak = 0.13716 (82) mri peak = 0.07176 (88) Left_Putamen (12): linear fit = 1.10 x + 0.0 (2608 voxels, overlap=0.378) Left_Putamen (12): linear fit = 1.10 x + 0.0 (2608 voxels, peak = 90), gca=89.8 gca peak = 0.15214 (84) mri peak = 0.05370 (90) Right_Putamen (51): linear fit = 1.12 x + 0.0 (2566 voxels, overlap=0.460) Right_Putamen (51): linear fit = 1.12 x + 0.0 (2566 voxels, peak = 94), gca=94.5 gca peak = 0.08983 (85) mri peak = 0.07137 (95) Brain_Stem (16): linear fit = 1.11 x + 0.0 (10818 voxels, overlap=0.468) Brain_Stem (16): linear fit = 1.11 x + 0.0 (10818 voxels, peak = 94), gca=93.9 gca peak = 0.11809 (92) mri peak = 0.08635 (99) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (644 voxels, overlap=0.019) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (644 voxels, peak = 103), gca=102.6 gca peak = 0.12914 (94) mri peak = 0.09862 (104) Left_VentralDC (28): linear fit = 1.10 x + 0.0 (1037 voxels, overlap=0.143) Left_VentralDC (28): linear fit = 1.10 x + 0.0 (1037 voxels, peak = 103), gca=102.9 gca peak = 0.21100 (36) uniform distribution in MR - rejecting arbitrary fit gca peak = 0.13542 (27) mri peak = 0.21795 (20) Fourth_Ventricle (15): linear fit = 0.68 x + 0.0 (450 voxels, overlap=0.018) Fourth_Ventricle (15): linear fit = 0.68 x + 0.0 (450 voxels, peak = 18), gca=18.2 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.21802 (40) gca peak Third_Ventricle = 0.21100 (36) gca peak CSF = 0.17123 (45) gca peak Left_Accumbens_area = 0.25875 (69) gca peak Left_undetermined = 0.96240 (36) gca peak Left_vessel = 0.33262 (65) gca peak Left_choroid_plexus = 0.09846 (46) gca peak Right_Inf_Lat_Vent = 0.28113 (34) gca peak Right_Accumbens_area = 0.27120 (72) gca peak Right_vessel = 0.61915 (60) gca peak Right_choroid_plexus = 0.12775 (51) gca peak Fifth_Ventricle = 0.45329 (44) gca peak WM_hypointensities = 0.11729 (81) gca peak non_WM_hypointensities = 0.10912 (56) gca peak Optic_Chiasm = 0.33287 (75) label assignment complete, 0 changed (0.00%) not using caudate to estimate GM means estimating mean gm scale to be 1.17 x + 0.0 estimating mean wm scale to be 1.03 x + 0.0 estimating mean csf scale to be 0.69 x + 0.0 saving intensity scales to talairach.label_intensities.txt **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.790, neg=0, invalid=96777 0116: dt=73.984000, rms=0.765 (3.083%), neg=0, invalid=96777 0117: dt=129.472000, rms=0.761 (0.511%), neg=0, invalid=96777 0118: dt=517.888000, rms=0.746 (1.994%), neg=0, invalid=96777 0119: dt=73.984000, rms=0.743 (0.393%), neg=0, invalid=96777 0120: dt=129.472000, rms=0.742 (0.202%), neg=0, invalid=96777 0121: dt=369.920000, rms=0.738 (0.520%), neg=0, invalid=96777 0122: dt=73.984000, rms=0.735 (0.336%), neg=0, invalid=96777 0123: dt=517.888000, rms=0.733 (0.398%), neg=0, invalid=96777 0124: dt=110.976000, rms=0.730 (0.311%), neg=0, invalid=96777 0125: dt=92.480000, rms=0.730 (0.099%), neg=0, invalid=96777 0126: dt=517.888000, rms=0.727 (0.319%), neg=0, invalid=96777 0127: dt=55.488000, rms=0.726 (0.213%), neg=0, invalid=96777 0128: dt=517.888000, rms=0.724 (0.254%), neg=0, invalid=96777 0129: dt=92.480000, rms=0.723 (0.179%), neg=0, invalid=96777 0130: dt=129.472000, rms=0.722 (0.069%), neg=0, invalid=96777 0131: dt=129.472000, rms=0.721 (0.130%), neg=0, invalid=96777 0132: dt=110.976000, rms=0.721 (0.056%), neg=0, invalid=96777 0133: dt=221.952000, rms=0.720 (0.121%), neg=0, invalid=96777 0134: dt=73.984000, rms=0.719 (0.074%), neg=0, invalid=96777 0135: dt=2071.552000, rms=0.715 (0.660%), neg=0, invalid=96777 0136: dt=73.984000, rms=0.712 (0.384%), neg=0, invalid=96777 0137: dt=129.472000, rms=0.710 (0.197%), neg=0, invalid=96777 0138: dt=92.480000, rms=0.710 (0.013%), neg=0, invalid=96777 0139: dt=92.480000, rms=0.710 (0.037%), neg=0, invalid=96777 0140: dt=92.480000, rms=0.710 (0.056%), neg=0, invalid=96777 0141: dt=92.480000, rms=0.709 (0.071%), neg=0, invalid=96777 0142: dt=92.480000, rms=0.709 (0.091%), neg=0, invalid=96777 0143: dt=92.480000, rms=0.708 (0.111%), neg=0, invalid=96777 0144: dt=92.480000, rms=0.707 (0.126%), neg=0, invalid=96777 0145: dt=92.480000, rms=0.706 (0.139%), neg=0, invalid=96777 0146: dt=92.480000, rms=0.705 (0.147%), neg=0, invalid=96777 0147: dt=92.480000, rms=0.704 (0.166%), neg=0, invalid=96777 0148: dt=92.480000, rms=0.702 (0.165%), neg=0, invalid=96777 0149: dt=92.480000, rms=0.701 (0.152%), neg=0, invalid=96777 0150: dt=92.480000, rms=0.700 (0.141%), neg=0, invalid=96777 0151: dt=92.480000, rms=0.699 (0.134%), neg=0, invalid=96777 0152: dt=92.480000, rms=0.699 (0.137%), neg=0, invalid=96777 0153: dt=92.480000, rms=0.698 (0.142%), neg=0, invalid=96777 0154: dt=92.480000, rms=0.697 (0.131%), neg=0, invalid=96777 0155: dt=92.480000, rms=0.696 (0.128%), neg=0, invalid=96777 0156: dt=92.480000, rms=0.695 (0.125%), neg=0, invalid=96777 0157: dt=92.480000, rms=0.694 (0.121%), neg=0, invalid=96777 0158: dt=92.480000, rms=0.693 (0.116%), neg=0, invalid=96777 0159: dt=92.480000, rms=0.692 (0.115%), neg=0, invalid=96777 0160: dt=92.480000, rms=0.692 (0.108%), neg=0, invalid=96777 0161: dt=92.480000, rms=0.691 (0.103%), neg=0, invalid=96777 0162: dt=92.480000, rms=0.690 (0.103%), neg=0, invalid=96777 0163: dt=92.480000, rms=0.690 (0.098%), neg=0, invalid=96777 0164: dt=92.480000, rms=0.689 (0.096%), neg=0, invalid=96777 0165: dt=92.480000, rms=0.688 (0.095%), neg=0, invalid=96777 0166: dt=92.480000, rms=0.688 (0.092%), neg=0, invalid=96777 0167: dt=92.480000, rms=0.687 (0.085%), neg=0, invalid=96777 0168: dt=92.480000, rms=0.687 (0.075%), neg=0, invalid=96777 0169: dt=92.480000, rms=0.686 (0.069%), neg=0, invalid=96777 0170: dt=92.480000, rms=0.686 (0.067%), neg=0, invalid=96777 0171: dt=92.480000, rms=0.685 (0.065%), neg=0, invalid=96777 0172: dt=92.480000, rms=0.685 (0.066%), neg=0, invalid=96777 0173: dt=92.480000, rms=0.684 (0.050%), neg=0, invalid=96777 0174: dt=92.480000, rms=0.684 (0.055%), neg=0, invalid=96777 0175: dt=92.480000, rms=0.684 (0.069%), neg=0, invalid=96777 0176: dt=92.480000, rms=0.683 (0.030%), neg=0, invalid=96777 0177: dt=92.480000, rms=0.683 (0.052%), neg=0, invalid=96777 0178: dt=92.480000, rms=0.683 (0.056%), neg=0, invalid=96777 0179: dt=92.480000, rms=0.682 (0.068%), neg=0, invalid=96777 0180: dt=92.480000, rms=0.682 (0.061%), neg=0, invalid=96777 0181: dt=92.480000, rms=0.681 (0.028%), neg=0, invalid=96777 0182: dt=92.480000, rms=0.681 (-0.001%), neg=0, invalid=96777 0183: dt=0.003612, rms=0.681 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.681, neg=0, invalid=96777 0184: dt=32.368000, rms=0.681 (0.004%), neg=0, invalid=96777 0185: dt=129.472000, rms=0.681 (0.053%), neg=0, invalid=96777 0186: dt=129.472000, rms=0.681 (0.023%), neg=0, invalid=96777 0187: dt=129.472000, rms=0.681 (0.049%), neg=0, invalid=96777 0188: dt=129.472000, rms=0.680 (0.023%), neg=0, invalid=96777 0189: dt=129.472000, rms=0.680 (0.033%), neg=0, invalid=96777 0190: dt=129.472000, rms=0.680 (0.024%), neg=0, invalid=96777 0191: dt=129.472000, rms=0.680 (0.081%), neg=0, invalid=96777 0192: dt=129.472000, rms=0.679 (0.068%), neg=0, invalid=96777 0193: dt=129.472000, rms=0.678 (0.103%), neg=0, invalid=96777 0194: dt=129.472000, rms=0.677 (0.144%), neg=0, invalid=96777 0195: dt=129.472000, rms=0.677 (0.100%), neg=0, invalid=96777 0196: dt=129.472000, rms=0.676 (0.095%), neg=0, invalid=96777 0197: dt=129.472000, rms=0.676 (0.062%), neg=0, invalid=96777 0198: dt=129.472000, rms=0.675 (0.065%), neg=0, invalid=96777 0199: dt=129.472000, rms=0.675 (0.055%), neg=0, invalid=96777 0200: dt=129.472000, rms=0.674 (0.056%), neg=0, invalid=96777 0201: dt=129.472000, rms=0.674 (0.062%), neg=0, invalid=96777 0202: dt=129.472000, rms=0.674 (0.072%), neg=0, invalid=96777 0203: dt=129.472000, rms=0.673 (0.049%), neg=0, invalid=96777 0204: dt=129.472000, rms=0.673 (0.061%), neg=0, invalid=96777 0205: dt=129.472000, rms=0.672 (0.069%), neg=0, invalid=96777 0206: dt=129.472000, rms=0.672 (0.053%), neg=0, invalid=96777 0207: dt=129.472000, rms=0.672 (0.045%), neg=0, invalid=96777 0208: dt=129.472000, rms=0.671 (0.040%), neg=0, invalid=96777 0209: dt=129.472000, rms=0.671 (0.024%), neg=0, invalid=96777 0210: dt=129.472000, rms=0.671 (0.058%), neg=0, invalid=96777 0211: dt=129.472000, rms=0.671 (0.051%), neg=0, invalid=96777 0212: dt=129.472000, rms=0.670 (0.054%), neg=0, invalid=96777 0213: dt=129.472000, rms=0.670 (0.067%), neg=0, invalid=96777 0214: dt=129.472000, rms=0.669 (0.048%), neg=0, invalid=96777 0215: dt=129.472000, rms=0.669 (0.056%), neg=0, invalid=96777 0216: dt=129.472000, rms=0.669 (0.045%), neg=0, invalid=96777 0217: dt=129.472000, rms=0.668 (0.052%), neg=0, invalid=96777 0218: dt=129.472000, rms=0.668 (0.051%), neg=0, invalid=96777 0219: dt=129.472000, rms=0.668 (0.014%), neg=0, invalid=96777 0220: dt=129.472000, rms=0.668 (0.055%), neg=0, invalid=96777 0221: dt=129.472000, rms=0.667 (0.075%), neg=0, invalid=96777 0222: dt=129.472000, rms=0.667 (0.032%), neg=0, invalid=96777 0223: dt=129.472000, rms=0.667 (-0.013%), neg=0, invalid=96777 0224: dt=0.000000, rms=0.667 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.669, neg=0, invalid=96777 0225: dt=103.680000, rms=0.663 (0.910%), neg=0, invalid=96777 0226: dt=103.680000, rms=0.660 (0.444%), neg=0, invalid=96777 0227: dt=82.944000, rms=0.656 (0.564%), neg=0, invalid=96777 0228: dt=36.288000, rms=0.655 (0.131%), neg=0, invalid=96777 0229: dt=145.152000, rms=0.652 (0.436%), neg=0, invalid=96777 0230: dt=15.552000, rms=0.652 (0.111%), neg=0, invalid=96777 0231: dt=36.288000, rms=0.651 (0.094%), neg=0, invalid=96777 0232: dt=145.152000, rms=0.648 (0.523%), neg=0, invalid=96777 0233: dt=15.552000, rms=0.647 (0.081%), neg=0, invalid=96777 0234: dt=31.104000, rms=0.647 (0.049%), neg=0, invalid=96777 0235: dt=31.104000, rms=0.646 (0.095%), neg=0, invalid=96777 0236: dt=31.104000, rms=0.645 (0.153%), neg=0, invalid=96777 0237: dt=31.104000, rms=0.644 (0.202%), neg=0, invalid=96777 0238: dt=31.104000, rms=0.643 (0.198%), neg=0, invalid=96777 0239: dt=31.104000, rms=0.641 (0.279%), neg=0, invalid=96777 0240: dt=31.104000, rms=0.639 (0.351%), neg=0, invalid=96777 0241: dt=31.104000, rms=0.636 (0.336%), neg=0, invalid=96777 0242: dt=31.104000, rms=0.634 (0.315%), neg=0, invalid=96777 0243: dt=31.104000, rms=0.632 (0.309%), neg=0, invalid=96777 0244: dt=31.104000, rms=0.630 (0.323%), neg=0, invalid=96777 0245: dt=31.104000, rms=0.628 (0.320%), neg=0, invalid=96777 0246: dt=31.104000, rms=0.627 (0.258%), neg=0, invalid=96777 0247: dt=31.104000, rms=0.625 (0.225%), neg=0, invalid=96777 0248: dt=31.104000, rms=0.624 (0.207%), neg=0, invalid=96777 0249: dt=31.104000, rms=0.623 (0.215%), neg=0, invalid=96777 0250: dt=31.104000, rms=0.621 (0.253%), neg=0, invalid=96777 0251: dt=31.104000, rms=0.620 (0.239%), neg=0, invalid=96777 0252: dt=31.104000, rms=0.618 (0.205%), neg=0, invalid=96777 0253: dt=31.104000, rms=0.617 (0.192%), neg=0, invalid=96777 0254: dt=31.104000, rms=0.616 (0.194%), neg=0, invalid=96777 0255: dt=31.104000, rms=0.615 (0.209%), neg=0, invalid=96777 0256: dt=31.104000, rms=0.613 (0.202%), neg=0, invalid=96777 0257: dt=31.104000, rms=0.613 (0.154%), neg=0, invalid=96777 0258: dt=31.104000, rms=0.612 (0.114%), neg=0, invalid=96777 0259: dt=31.104000, rms=0.611 (0.126%), neg=0, invalid=96777 0260: dt=31.104000, rms=0.610 (0.134%), neg=0, invalid=96777 0261: dt=31.104000, rms=0.610 (0.109%), neg=0, invalid=96777 0262: dt=31.104000, rms=0.609 (0.091%), neg=0, invalid=96777 0263: dt=31.104000, rms=0.608 (0.121%), neg=0, invalid=96777 0264: dt=31.104000, rms=0.607 (0.133%), neg=0, invalid=96777 0265: dt=31.104000, rms=0.607 (0.115%), neg=0, invalid=96777 0266: dt=31.104000, rms=0.607 (0.005%), neg=0, invalid=96777 0267: dt=31.104000, rms=0.607 (0.019%), neg=0, invalid=96777 0268: dt=31.104000, rms=0.606 (0.030%), neg=0, invalid=96777 0269: dt=31.104000, rms=0.606 (0.043%), neg=0, invalid=96777 0270: dt=31.104000, rms=0.606 (0.043%), neg=0, invalid=96777 0271: dt=31.104000, rms=0.606 (0.046%), neg=0, invalid=96777 0272: dt=31.104000, rms=0.605 (0.037%), neg=0, invalid=96777 0273: dt=31.104000, rms=0.605 (0.050%), neg=0, invalid=96777 0274: dt=31.104000, rms=0.605 (0.048%), neg=0, invalid=96777 0275: dt=31.104000, rms=0.605 (0.038%), neg=0, invalid=96777 0276: dt=31.104000, rms=0.604 (0.044%), neg=0, invalid=96777 0277: dt=31.104000, rms=0.604 (0.025%), neg=0, invalid=96777 0278: dt=31.104000, rms=0.604 (0.008%), neg=0, invalid=96777 0279: dt=31.104000, rms=0.604 (0.001%), neg=0, invalid=96777 0280: dt=36.288000, rms=0.604 (0.017%), neg=0, invalid=96777 0281: dt=15.552000, rms=0.604 (0.002%), neg=0, invalid=96777 0282: dt=15.552000, rms=0.604 (0.001%), neg=0, invalid=96777 0283: dt=15.552000, rms=0.604 (-0.001%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.604, neg=0, invalid=96777 0284: dt=36.288000, rms=0.603 (0.096%), neg=0, invalid=96777 0285: dt=145.152000, rms=0.602 (0.236%), neg=0, invalid=96777 0286: dt=25.920000, rms=0.602 (0.033%), neg=0, invalid=96777 0287: dt=25.920000, rms=0.602 (0.038%), neg=0, invalid=96777 0288: dt=25.920000, rms=0.601 (0.082%), neg=0, invalid=96777 0289: dt=25.920000, rms=0.600 (0.107%), neg=0, invalid=96777 0290: dt=25.920000, rms=0.600 (0.095%), neg=0, invalid=96777 0291: dt=25.920000, rms=0.600 (0.047%), neg=0, invalid=96777 0292: dt=25.920000, rms=0.599 (0.065%), neg=0, invalid=96777 0293: dt=25.920000, rms=0.599 (0.076%), neg=0, invalid=96777 0294: dt=25.920000, rms=0.598 (0.083%), neg=0, invalid=96777 0295: dt=25.920000, rms=0.598 (0.079%), neg=0, invalid=96777 0296: dt=25.920000, rms=0.597 (0.081%), neg=0, invalid=96777 0297: dt=25.920000, rms=0.597 (0.112%), neg=0, invalid=96777 0298: dt=25.920000, rms=0.596 (0.120%), neg=0, invalid=96777 0299: dt=25.920000, rms=0.595 (0.114%), neg=0, invalid=96777 0300: dt=25.920000, rms=0.595 (0.081%), neg=0, invalid=96777 0301: dt=25.920000, rms=0.594 (0.053%), neg=0, invalid=96777 0302: dt=25.920000, rms=0.594 (0.068%), neg=0, invalid=96777 0303: dt=25.920000, rms=0.594 (0.069%), neg=0, invalid=96777 0304: dt=25.920000, rms=0.593 (0.083%), neg=0, invalid=96777 0305: dt=25.920000, rms=0.593 (0.088%), neg=0, invalid=96777 0306: dt=25.920000, rms=0.592 (0.070%), neg=0, invalid=96777 0307: dt=25.920000, rms=0.592 (0.059%), neg=0, invalid=96777 0308: dt=25.920000, rms=0.591 (0.055%), neg=0, invalid=96777 0309: dt=25.920000, rms=0.591 (0.068%), neg=0, invalid=96777 0310: dt=25.920000, rms=0.591 (0.080%), neg=0, invalid=96777 0311: dt=25.920000, rms=0.590 (0.085%), neg=0, invalid=96777 0312: dt=25.920000, rms=0.590 (0.068%), neg=0, invalid=96777 0313: dt=25.920000, rms=0.589 (0.044%), neg=0, invalid=96777 0314: dt=25.920000, rms=0.589 (0.034%), neg=0, invalid=96777 0315: dt=25.920000, rms=0.589 (0.064%), neg=0, invalid=96777 0316: dt=25.920000, rms=0.588 (0.082%), neg=0, invalid=96777 0317: dt=25.920000, rms=0.588 (0.071%), neg=0, invalid=96777 0318: dt=25.920000, rms=0.588 (0.080%), neg=0, invalid=96777 0319: dt=25.920000, rms=0.587 (0.081%), neg=0, invalid=96777 0320: dt=25.920000, rms=0.586 (0.095%), neg=0, invalid=96777 0321: dt=25.920000, rms=0.586 (0.094%), neg=0, invalid=96777 0322: dt=25.920000, rms=0.585 (0.079%), neg=0, invalid=96777 0323: dt=25.920000, rms=0.585 (0.050%), neg=0, invalid=96777 0324: dt=25.920000, rms=0.585 (0.014%), neg=0, invalid=96777 0325: dt=25.920000, rms=0.585 (-0.002%), neg=0, invalid=96777 0326: dt=36.288000, rms=0.585 (0.022%), neg=0, invalid=96777 0327: dt=5.184000, rms=0.585 (0.005%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.595, neg=0, invalid=96777 0328: dt=32.000000, rms=0.591 (0.715%), neg=0, invalid=96777 0329: dt=11.200000, rms=0.590 (0.260%), neg=0, invalid=96777 0330: dt=8.000000, rms=0.589 (0.128%), neg=0, invalid=96777 0331: dt=2.800000, rms=0.589 (0.034%), neg=0, invalid=96777 0332: dt=0.700000, rms=0.589 (0.009%), neg=0, invalid=96777 0333: dt=0.043750, rms=0.589 (0.001%), neg=0, invalid=96777 0334: dt=0.010937, rms=0.589 (0.000%), neg=0, invalid=96777 0335: dt=0.001953, rms=0.589 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.589, neg=0, invalid=96777 0336: dt=19.200000, rms=0.587 (0.268%), neg=0, invalid=96777 0337: dt=44.800000, rms=0.584 (0.558%), neg=0, invalid=96777 0338: dt=11.200000, rms=0.583 (0.105%), neg=0, invalid=96777 0339: dt=11.200000, rms=0.582 (0.163%), neg=0, invalid=96777 0340: dt=38.400000, rms=0.581 (0.275%), neg=0, invalid=96777 0341: dt=8.759124, rms=0.579 (0.228%), neg=0, invalid=96777 0342: dt=11.200000, rms=0.578 (0.143%), neg=0, invalid=96777 0343: dt=11.200000, rms=0.578 (0.129%), neg=0, invalid=96777 0344: dt=19.200000, rms=0.577 (0.133%), neg=0, invalid=96777 0345: dt=11.200000, rms=0.576 (0.130%), neg=0, invalid=96777 0346: dt=9.600000, rms=0.576 (0.091%), neg=0, invalid=96777 0347: dt=11.200000, rms=0.575 (0.128%), neg=0, invalid=96777 0348: dt=25.600000, rms=0.574 (0.130%), neg=0, invalid=96777 0349: dt=8.494845, rms=0.573 (0.134%), neg=0, invalid=96777 0350: dt=11.200000, rms=0.573 (0.110%), neg=0, invalid=96777 0351: dt=11.200000, rms=0.572 (0.104%), neg=0, invalid=96777 0352: dt=19.200000, rms=0.572 (0.106%), neg=0, invalid=96777 0353: dt=11.200000, rms=0.571 (0.095%), neg=0, invalid=96777 0354: dt=6.400000, rms=0.571 (0.047%), neg=0, invalid=96777 0355: dt=6.400000, rms=0.570 (0.072%), neg=0, invalid=96777 0356: dt=6.400000, rms=0.570 (0.099%), neg=0, invalid=96777 0357: dt=6.400000, rms=0.569 (0.113%), neg=0, invalid=96777 0358: dt=6.400000, rms=0.568 (0.161%), neg=0, invalid=96777 0359: dt=6.400000, rms=0.567 (0.187%), neg=0, invalid=96777 0360: dt=6.400000, rms=0.566 (0.210%), neg=0, invalid=96777 0361: dt=6.400000, rms=0.565 (0.224%), neg=0, invalid=96777 0362: dt=6.400000, rms=0.563 (0.207%), neg=0, invalid=96777 0363: dt=6.400000, rms=0.562 (0.220%), neg=0, invalid=96777 0364: dt=6.400000, rms=0.561 (0.234%), neg=0, invalid=96777 0365: dt=6.400000, rms=0.560 (0.229%), neg=0, invalid=96777 0366: dt=6.400000, rms=0.558 (0.215%), neg=0, invalid=96777 0367: dt=6.400000, rms=0.557 (0.207%), neg=0, invalid=96777 0368: dt=6.400000, rms=0.556 (0.212%), neg=0, invalid=96777 0369: dt=6.400000, rms=0.555 (0.198%), neg=0, invalid=96777 0370: dt=6.400000, rms=0.554 (0.186%), neg=0, invalid=96777 0371: dt=6.400000, rms=0.553 (0.199%), neg=0, invalid=96777 0372: dt=6.400000, rms=0.552 (0.187%), neg=0, invalid=96777 0373: dt=6.400000, rms=0.551 (0.176%), neg=0, invalid=96777 0374: dt=6.400000, rms=0.550 (0.165%), neg=0, invalid=96777 0375: dt=6.400000, rms=0.549 (0.156%), neg=0, invalid=96777 0376: dt=6.400000, rms=0.548 (0.155%), neg=0, invalid=96777 0377: dt=6.400000, rms=0.547 (0.145%), neg=0, invalid=96777 0378: dt=6.400000, rms=0.547 (0.134%), neg=0, invalid=96777 0379: dt=6.400000, rms=0.546 (0.118%), neg=0, invalid=96777 0380: dt=6.400000, rms=0.545 (0.110%), neg=0, invalid=96777 0381: dt=6.400000, rms=0.545 (0.102%), neg=0, invalid=96777 0382: dt=6.400000, rms=0.544 (0.076%), neg=0, invalid=96777 0383: dt=6.400000, rms=0.544 (0.056%), neg=0, invalid=96777 0384: dt=6.400000, rms=0.544 (0.062%), neg=0, invalid=96777 0385: dt=6.400000, rms=0.543 (0.070%), neg=0, invalid=96777 0386: dt=6.400000, rms=0.543 (0.078%), neg=0, invalid=96777 0387: dt=6.400000, rms=0.543 (0.082%), neg=0, invalid=96777 0388: dt=6.400000, rms=0.542 (0.085%), neg=0, invalid=96777 0389: dt=6.400000, rms=0.542 (0.079%), neg=0, invalid=96777 0390: dt=6.400000, rms=0.541 (0.076%), neg=0, invalid=96777 0391: dt=6.400000, rms=0.541 (0.063%), neg=0, invalid=96777 0392: dt=6.400000, rms=0.541 (0.061%), neg=0, invalid=96777 0393: dt=6.400000, rms=0.540 (0.057%), neg=0, invalid=96777 0394: dt=6.400000, rms=0.540 (0.059%), neg=0, invalid=96777 0395: dt=6.400000, rms=0.540 (0.064%), neg=0, invalid=96777 0396: dt=6.400000, rms=0.539 (0.059%), neg=0, invalid=96777 0397: dt=6.400000, rms=0.539 (0.031%), neg=0, invalid=96777 0398: dt=6.400000, rms=0.539 (0.040%), neg=0, invalid=96777 0399: dt=6.400000, rms=0.539 (0.045%), neg=0, invalid=96777 0400: dt=6.400000, rms=0.538 (0.058%), neg=0, invalid=96777 0401: dt=6.400000, rms=0.538 (0.068%), neg=0, invalid=96777 0402: dt=6.400000, rms=0.538 (0.064%), neg=0, invalid=96777 0403: dt=6.400000, rms=0.537 (0.064%), neg=0, invalid=96777 0404: dt=6.400000, rms=0.537 (0.051%), neg=0, invalid=96777 0405: dt=6.400000, rms=0.537 (0.046%), neg=0, invalid=96777 0406: dt=6.400000, rms=0.537 (0.042%), neg=0, invalid=96777 0407: dt=6.400000, rms=0.536 (0.039%), neg=0, invalid=96777 0408: dt=6.400000, rms=0.536 (0.037%), neg=0, invalid=96777 0409: dt=6.400000, rms=0.536 (0.037%), neg=0, invalid=96777 0410: dt=6.400000, rms=0.536 (0.030%), neg=0, invalid=96777 0411: dt=6.400000, rms=0.536 (0.035%), neg=0, invalid=96777 0412: dt=6.400000, rms=0.536 (0.029%), neg=0, invalid=96777 0413: dt=6.400000, rms=0.535 (0.034%), neg=0, invalid=96777 0414: dt=6.400000, rms=0.535 (0.033%), neg=0, invalid=96777 0415: dt=6.400000, rms=0.535 (0.034%), neg=0, invalid=96777 0416: dt=6.400000, rms=0.535 (0.035%), neg=0, invalid=96777 0417: dt=6.400000, rms=0.535 (0.038%), neg=0, invalid=96777 0418: dt=6.400000, rms=0.534 (0.030%), neg=0, invalid=96777 0419: dt=6.400000, rms=0.534 (0.034%), neg=0, invalid=96777 0420: dt=6.400000, rms=0.534 (0.029%), neg=0, invalid=96777 0421: dt=6.400000, rms=0.534 (0.034%), neg=0, invalid=96777 0422: dt=6.400000, rms=0.534 (0.025%), neg=0, invalid=96777 0423: dt=6.400000, rms=0.534 (0.029%), neg=0, invalid=96777 0424: dt=6.400000, rms=0.533 (0.028%), neg=0, invalid=96777 0425: dt=6.400000, rms=0.533 (0.022%), neg=0, invalid=96777 0426: dt=6.400000, rms=0.533 (0.026%), neg=0, invalid=96777 0427: dt=6.400000, rms=0.533 (0.023%), neg=0, invalid=96777 0428: dt=6.400000, rms=0.533 (0.031%), neg=0, invalid=96777 0429: dt=6.400000, rms=0.533 (0.026%), neg=0, invalid=96777 0430: dt=6.400000, rms=0.533 (0.022%), neg=0, invalid=96777 0431: dt=6.400000, rms=0.533 (0.019%), neg=0, invalid=96777 0432: dt=25.600000, rms=0.532 (0.020%), neg=0, invalid=96777 0433: dt=2.800000, rms=0.532 (0.002%), neg=0, invalid=96777 0434: dt=2.800000, rms=0.532 (0.006%), neg=0, invalid=96777 0435: dt=2.800000, rms=0.532 (0.003%), neg=0, invalid=96777 0436: dt=2.800000, rms=0.532 (-0.002%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.555, neg=0, invalid=96777 0437: dt=0.000000, rms=0.555 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.555, neg=0, invalid=96777 0438: dt=0.000000, rms=0.555 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.599, neg=0, invalid=96777 0439: dt=0.953846, rms=0.597 (0.447%), neg=0, invalid=96777 0440: dt=0.384000, rms=0.597 (0.031%), neg=0, invalid=96777 0441: dt=0.384000, rms=0.597 (-0.018%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.597, neg=0, invalid=96777 0442: dt=0.516667, rms=0.596 (0.081%), neg=0, invalid=96777 0443: dt=0.320000, rms=0.596 (0.018%), neg=0, invalid=96777 0444: dt=0.320000, rms=0.596 (-0.005%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.541, neg=0, invalid=96777 0445: dt=0.112000, rms=0.534 (1.267%), neg=0, invalid=96777 0446: dt=0.007000, rms=0.534 (0.060%), neg=0, invalid=96777 0447: dt=0.080000, rms=0.531 (0.680%), neg=0, invalid=96777 0448: dt=0.007000, rms=0.530 (0.050%), neg=0, invalid=96777 0449: dt=0.007000, rms=0.530 (0.049%), neg=0, invalid=96777 0450: dt=0.007000, rms=0.530 (0.091%), neg=0, invalid=96777 0451: dt=0.007000, rms=0.529 (0.130%), neg=0, invalid=96777 0452: dt=0.007000, rms=0.528 (0.162%), neg=0, invalid=96777 0453: dt=0.007000, rms=0.527 (0.187%), neg=0, invalid=96777 0454: dt=0.007000, rms=0.526 (0.210%), neg=0, invalid=96777 0455: dt=0.007000, rms=0.525 (0.224%), neg=0, invalid=96777 0456: dt=0.007000, rms=0.523 (0.237%), neg=0, invalid=96777 0457: dt=0.007000, rms=0.522 (0.243%), neg=0, invalid=96777 0458: dt=0.007000, rms=0.521 (0.246%), neg=0, invalid=96777 0459: dt=0.007000, rms=0.520 (0.245%), neg=0, invalid=96777 0460: dt=0.007000, rms=0.518 (0.240%), neg=0, invalid=96777 0461: dt=0.007000, rms=0.517 (0.229%), neg=0, invalid=96777 0462: dt=0.007000, rms=0.516 (0.228%), neg=0, invalid=96777 0463: dt=0.007000, rms=0.515 (0.212%), neg=0, invalid=96777 0464: dt=0.007000, rms=0.514 (0.199%), neg=0, invalid=96777 0465: dt=0.007000, rms=0.513 (0.185%), neg=0, invalid=96777 0466: dt=0.007000, rms=0.512 (0.168%), neg=0, invalid=96777 0467: dt=0.007000, rms=0.511 (0.159%), neg=0, invalid=96777 0468: dt=0.007000, rms=0.511 (0.141%), neg=0, invalid=96777 0469: dt=0.007000, rms=0.510 (0.124%), neg=0, invalid=96777 0470: dt=0.007000, rms=0.509 (0.105%), neg=0, invalid=96777 0471: dt=0.007000, rms=0.509 (0.094%), neg=0, invalid=96777 0472: dt=0.007000, rms=0.508 (0.084%), neg=0, invalid=96777 0473: dt=0.007000, rms=0.508 (0.068%), neg=0, invalid=96777 0474: dt=0.007000, rms=0.508 (0.052%), neg=0, invalid=96777 0475: dt=0.007000, rms=0.508 (0.044%), neg=0, invalid=96777 0476: dt=0.007000, rms=0.507 (0.033%), neg=0, invalid=96777 0477: dt=0.007000, rms=0.507 (0.025%), neg=0, invalid=96777 0478: dt=0.007000, rms=0.507 (0.017%), neg=0, invalid=96777 0479: dt=0.000000, rms=0.507 (-0.001%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.507, neg=0, invalid=96777 0480: dt=0.115639, rms=0.505 (0.356%), neg=0, invalid=96777 0481: dt=0.112000, rms=0.504 (0.257%), neg=0, invalid=96777 0482: dt=0.024000, rms=0.504 (0.046%), neg=0, invalid=96777 0483: dt=0.024000, rms=0.504 (0.042%), neg=0, invalid=96777 0484: dt=0.024000, rms=0.503 (0.076%), neg=0, invalid=96777 0485: dt=0.024000, rms=0.503 (0.105%), neg=0, invalid=96777 0486: dt=0.012000, rms=0.503 (0.013%), neg=0, invalid=96777 0487: dt=0.012000, rms=0.503 (0.030%), neg=0, invalid=96777 0488: dt=0.012000, rms=0.502 (0.040%), neg=0, invalid=96777 0489: dt=0.012000, rms=0.502 (0.049%), neg=0, invalid=96777 0490: dt=0.012000, rms=0.502 (0.057%), neg=0, invalid=96777 0491: dt=0.012000, rms=0.502 (0.059%), neg=0, invalid=96777 0492: dt=0.012000, rms=0.501 (0.069%), neg=0, invalid=96777 0493: dt=0.012000, rms=0.501 (0.067%), neg=0, invalid=96777 0494: dt=0.012000, rms=0.501 (0.067%), neg=0, invalid=96777 0495: dt=0.012000, rms=0.500 (0.066%), neg=0, invalid=96777 0496: dt=0.012000, rms=0.500 (0.062%), neg=0, invalid=96777 0497: dt=0.012000, rms=0.500 (0.058%), neg=0, invalid=96777 0498: dt=0.012000, rms=0.499 (0.053%), neg=0, invalid=96777 0499: dt=0.012000, rms=0.499 (0.049%), neg=0, invalid=96777 0500: dt=0.012000, rms=0.499 (0.046%), neg=0, invalid=96777 0501: dt=0.012000, rms=0.499 (-0.001%), neg=0, invalid=96777 0502: dt=0.000000, rms=0.499 (0.000%), neg=0, invalid=96777 label assignment complete, 0 changed (0.00%) ********************************************************************************************* ********************************************************************************************* ********************************************************************************************* ********************* ALLOWING NEGATIVE NODES IN DEFORMATION ******************************** ********************************************************************************************* ********************************************************************************************* ********************************************************************************************* **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.497, neg=0, invalid=96777 0503: dt=8.092000, rms=0.497 (0.001%), neg=0, invalid=96777 0504: dt=0.018063, rms=0.497 (-0.001%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.497, neg=0, invalid=96777 0505: dt=0.004516, rms=0.497 (0.000%), neg=0, invalid=96777 0506: dt=0.004516, rms=0.497 (0.000%), neg=0, invalid=96777 0507: dt=0.004516, rms=0.497 (-0.000%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.497, neg=0, invalid=96777 0508: dt=31.104000, rms=0.496 (0.166%), neg=0, invalid=96777 0509: dt=25.920000, rms=0.496 (0.033%), neg=0, invalid=96777 0510: dt=25.920000, rms=0.496 (0.041%), neg=0, invalid=96777 0511: dt=25.920000, rms=0.496 (-0.058%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.496, neg=0, invalid=96777 0512: dt=31.104000, rms=0.495 (0.242%), neg=0, invalid=96777 0513: dt=36.288000, rms=0.493 (0.249%), neg=0, invalid=96777 0514: dt=25.920000, rms=0.493 (0.069%), neg=0, invalid=96777 0515: dt=25.920000, rms=0.493 (0.104%), neg=0, invalid=96777 0516: dt=25.920000, rms=0.492 (0.097%), neg=0, invalid=96777 0517: dt=25.920000, rms=0.492 (0.105%), neg=0, invalid=96777 0518: dt=25.920000, rms=0.491 (0.121%), neg=0, invalid=96777 0519: dt=25.920000, rms=0.490 (0.118%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.491, neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0520: dt=11.200000, rms=0.489 (0.424%), neg=0, invalid=96777 0521: dt=11.200000, rms=0.487 (0.246%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 6 iterations, nbhd size=1, neg = 0 0522: dt=11.200000, rms=0.486 (0.178%), neg=0, invalid=96777 iter 0, gcam->neg = 6 after 16 iterations, nbhd size=2, neg = 0 0523: dt=11.200000, rms=0.486 (0.093%), neg=0, invalid=96777 iter 0, gcam->neg = 11 after 9 iterations, nbhd size=1, neg = 0 0524: dt=11.200000, rms=0.486 (-0.020%), neg=0, invalid=96777 iter 0, gcam->neg = 5 after 6 iterations, nbhd size=1, neg = 0 0525: dt=25.600000, rms=0.485 (0.158%), neg=0, invalid=96777 0526: dt=8.000000, rms=0.485 (0.039%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.485, neg=0, invalid=96777 iter 0, gcam->neg = 2 after 7 iterations, nbhd size=1, neg = 0 0527: dt=25.600000, rms=0.481 (0.904%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 1 iterations, nbhd size=0, neg = 0 0528: dt=9.861635, rms=0.479 (0.348%), neg=0, invalid=96777 0529: dt=9.600000, rms=0.478 (0.208%), neg=0, invalid=96777 0530: dt=9.600000, rms=0.477 (0.117%), neg=0, invalid=96777 0531: dt=9.600000, rms=0.476 (0.234%), neg=0, invalid=96777 iter 0, gcam->neg = 2 after 7 iterations, nbhd size=1, neg = 0 0532: dt=9.600000, rms=0.475 (0.181%), neg=0, invalid=96777 0533: dt=9.600000, rms=0.475 (0.141%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0534: dt=9.600000, rms=0.473 (0.320%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 1 iterations, nbhd size=0, neg = 0 0535: dt=9.600000, rms=0.472 (0.251%), neg=0, invalid=96777 0536: dt=9.600000, rms=0.471 (0.228%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 0537: dt=9.600000, rms=0.470 (0.164%), neg=0, invalid=96777 0538: dt=9.600000, rms=0.469 (0.237%), neg=0, invalid=96777 0539: dt=9.600000, rms=0.468 (0.212%), neg=0, invalid=96777 0540: dt=9.600000, rms=0.467 (0.190%), neg=0, invalid=96777 0541: dt=9.600000, rms=0.467 (0.154%), neg=0, invalid=96777 0542: dt=9.600000, rms=0.466 (0.190%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 7 iterations, nbhd size=1, neg = 0 0543: dt=9.600000, rms=0.465 (0.109%), neg=0, invalid=96777 0544: dt=9.600000, rms=0.465 (0.120%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0545: dt=9.600000, rms=0.464 (0.119%), neg=0, invalid=96777 0546: dt=6.400000, rms=0.464 (0.047%), neg=0, invalid=96777 0547: dt=6.400000, rms=0.464 (0.037%), neg=0, invalid=96777 0548: dt=6.400000, rms=0.464 (0.018%), neg=0, invalid=96777 0549: dt=6.400000, rms=0.463 (0.023%), neg=0, invalid=96777 0550: dt=6.400000, rms=0.463 (0.022%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.468, neg=0, invalid=96777 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=1, neg = 0 0551: dt=3.700000, rms=0.468 (0.112%), neg=0, invalid=96777 0552: dt=1.008000, rms=0.468 (0.009%), neg=0, invalid=96777 0553: dt=1.008000, rms=0.468 (0.019%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 0554: dt=1.008000, rms=0.467 (0.010%), neg=0, invalid=96777 0555: dt=1.008000, rms=0.467 (-0.035%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.467, neg=0, invalid=96777 0556: dt=1.008000, rms=0.467 (0.023%), neg=0, invalid=96777 0557: dt=4.173913, rms=0.467 (0.091%), neg=0, invalid=96777 0558: dt=0.252000, rms=0.467 (0.005%), neg=0, invalid=96777 0559: dt=0.252000, rms=0.467 (0.005%), neg=0, invalid=96777 0560: dt=0.252000, rms=0.467 (0.007%), neg=0, invalid=96777 0561: dt=0.252000, rms=0.467 (0.011%), neg=0, invalid=96777 0562: dt=0.252000, rms=0.467 (0.012%), neg=0, invalid=96777 0563: dt=0.252000, rms=0.467 (0.013%), neg=0, invalid=96777 0564: dt=0.252000, rms=0.467 (0.015%), neg=0, invalid=96777 0565: dt=0.252000, rms=0.467 (0.011%), neg=0, invalid=96777 0566: dt=0.252000, rms=0.466 (0.015%), neg=0, invalid=96777 0567: dt=0.252000, rms=0.466 (0.015%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.473, neg=0, invalid=96777 0568: dt=0.000000, rms=0.473 (-0.001%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.473, neg=0, invalid=96777 0569: dt=0.096000, rms=0.473 (0.000%), neg=0, invalid=96777 0570: dt=0.192000, rms=0.473 (0.004%), neg=0, invalid=96777 0571: dt=0.192000, rms=0.473 (0.004%), neg=0, invalid=96777 0572: dt=0.112000, rms=0.473 (0.001%), neg=0, invalid=96777 0573: dt=0.112000, rms=0.473 (0.001%), neg=0, invalid=96777 0574: dt=0.112000, rms=0.473 (-0.001%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.463, neg=0, invalid=96777 iter 0, gcam->neg = 730 after 22 iterations, nbhd size=2, neg = 0 0575: dt=1.395201, rms=0.428 (7.563%), neg=0, invalid=96777 0576: dt=0.000188, rms=0.428 (0.007%), neg=0, invalid=96777 0577: dt=0.000188, rms=0.428 (0.000%), neg=0, invalid=96777 0578: dt=0.000188, rms=0.428 (-0.001%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.428, neg=0, invalid=96777 0579: dt=0.000750, rms=0.428 (0.001%), neg=0, invalid=96777 0580: dt=0.000023, rms=0.428 (0.000%), neg=0, invalid=96777 0581: dt=0.000023, rms=0.428 (-0.000%), neg=0, invalid=96777 label assignment complete, 0 changed (0.00%) label assignment complete, 0 changed (0.00%) ***************** morphing with label term set to 0 ******************************* **************** pass 1 of 1 ************************ setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.420, neg=0, invalid=96777 0582: dt=0.000000, rms=0.420 (-0.197%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.420, neg=0, invalid=96777 0583: dt=0.000000, rms=0.420 (0.000%), neg=0, invalid=96777 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.421, neg=0, invalid=96777 0584: dt=0.000000, rms=0.421 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.421, neg=0, invalid=96777 0585: dt=9.072000, rms=0.421 (0.004%), neg=0, invalid=96777 0586: dt=3.888000, rms=0.421 (0.001%), neg=0, invalid=96777 0587: dt=3.888000, rms=0.421 (-0.000%), neg=0, invalid=96777 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.421, neg=0, invalid=96777 0588: dt=2.800000, rms=0.421 (0.022%), neg=0, invalid=96777 0589: dt=2.400000, rms=0.421 (0.006%), neg=0, invalid=96777 0590: dt=2.400000, rms=0.421 (-0.002%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.421, neg=0, invalid=96777 iter 0, gcam->neg = 8 after 9 iterations, nbhd size=1, neg = 0 0591: dt=25.600000, rms=0.420 (0.250%), neg=0, invalid=96777 iter 0, gcam->neg = 18 after 10 iterations, nbhd size=1, neg = 0 0592: dt=9.600000, rms=0.419 (0.089%), neg=0, invalid=96777 iter 0, gcam->neg = 5 after 9 iterations, nbhd size=1, neg = 0 0593: dt=9.600000, rms=0.419 (0.066%), neg=0, invalid=96777 iter 0, gcam->neg = 10 after 9 iterations, nbhd size=1, neg = 0 0594: dt=9.600000, rms=0.419 (0.072%), neg=0, invalid=96777 iter 0, gcam->neg = 13 after 15 iterations, nbhd size=2, neg = 0 0595: dt=9.600000, rms=0.419 (-0.140%), neg=0, invalid=96777 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.420, neg=0, invalid=96777 0596: dt=0.541667, rms=0.420 (0.025%), neg=0, invalid=96777 iter 0, gcam->neg = 26 after 19 iterations, nbhd size=2, neg = 0 0597: dt=2.698795, rms=0.419 (0.155%), neg=0, invalid=96777 iter 0, gcam->neg = 12 after 18 iterations, nbhd size=2, neg = 0 0598: dt=1.008000, rms=0.419 (0.062%), neg=0, invalid=96777 iter 0, gcam->neg = 3 after 5 iterations, nbhd size=1, neg = 0 0599: dt=1.008000, rms=0.419 (0.038%), neg=0, invalid=96777 iter 0, gcam->neg = 13 after 20 iterations, nbhd size=2, neg = 0 0600: dt=1.008000, rms=0.419 (0.035%), neg=0, invalid=96777 iter 0, gcam->neg = 32 after 22 iterations, nbhd size=2, neg = 0 0601: dt=1.008000, rms=0.419 (-0.047%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.419, neg=0, invalid=96777 iter 0, gcam->neg = 10 after 11 iterations, nbhd size=1, neg = 0 0602: dt=1.008000, rms=0.419 (0.043%), neg=0, invalid=96777 iter 0, gcam->neg = 55 after 33 iterations, nbhd size=3, neg = 0 0603: dt=2.589147, rms=0.418 (0.231%), neg=0, invalid=96777 iter 0, gcam->neg = 28 after 12 iterations, nbhd size=1, neg = 0 0604: dt=2.106383, rms=0.417 (0.123%), neg=0, invalid=96777 iter 0, gcam->neg = 19 after 9 iterations, nbhd size=1, neg = 0 0605: dt=2.106383, rms=0.417 (0.071%), neg=0, invalid=96777 iter 0, gcam->neg = 74 after 21 iterations, nbhd size=1, neg = 0 0606: dt=2.106383, rms=0.417 (-0.033%), neg=0, invalid=96777 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.420, neg=0, invalid=96777 0607: dt=0.000000, rms=0.420 (0.000%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.420, neg=0, invalid=96777 0608: dt=0.001750, rms=0.420 (0.000%), neg=0, invalid=96777 0609: dt=0.005000, rms=0.420 (0.000%), neg=0, invalid=96777 0610: dt=0.005000, rms=0.420 (0.001%), neg=0, invalid=96777 0611: dt=0.005000, rms=0.420 (0.001%), neg=0, invalid=96777 0612: dt=0.005000, rms=0.420 (0.002%), neg=0, invalid=96777 0613: dt=0.005000, rms=0.420 (0.002%), neg=0, invalid=96777 0614: dt=0.005000, rms=0.420 (0.002%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0615: dt=0.005000, rms=0.420 (0.003%), neg=0, invalid=96777 0616: dt=0.005000, rms=0.420 (0.003%), neg=0, invalid=96777 0617: dt=0.005000, rms=0.420 (0.003%), neg=0, invalid=96777 0618: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777 0619: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777 0620: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777 0621: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777 0622: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777 0623: dt=0.005000, rms=0.420 (0.004%), neg=0, invalid=96777 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.415, neg=0, invalid=96777 iter 0, gcam->neg = 187 after 17 iterations, nbhd size=2, neg = 0 0624: dt=0.448000, rms=0.406 (2.005%), neg=0, invalid=96777 0625: dt=0.001750, rms=0.406 (0.001%), neg=0, invalid=96777 0626: dt=0.001750, rms=0.406 (0.001%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0627: dt=0.001750, rms=0.406 (0.001%), neg=0, invalid=96777 0628: dt=0.001750, rms=0.406 (0.001%), neg=0, invalid=96777 0629: dt=0.001750, rms=0.406 (0.001%), neg=0, invalid=96777 0630: dt=0.001750, rms=0.406 (0.002%), neg=0, invalid=96777 0631: dt=0.001750, rms=0.406 (0.003%), neg=0, invalid=96777 0632: dt=0.001750, rms=0.406 (0.004%), neg=0, invalid=96777 iter 0, gcam->neg = 1 after 5 iterations, nbhd size=1, neg = 0 0633: dt=0.001750, rms=0.406 (0.003%), neg=0, invalid=96777 0634: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777 0635: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777 0636: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777 0637: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777 0638: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777 0639: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777 0640: dt=0.001750, rms=0.406 (0.006%), neg=0, invalid=96777 0641: dt=0.001750, rms=0.406 (0.006%), neg=0, invalid=96777 0642: dt=0.001750, rms=0.406 (0.005%), neg=0, invalid=96777 iter 0, gcam->neg = 6 after 9 iterations, nbhd size=1, neg = 0 0643: dt=0.064000, rms=0.406 (0.005%), neg=0, invalid=96777 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.406, neg=0, invalid=96777 iter 0, gcam->neg = 42 after 7 iterations, nbhd size=1, neg = 0 0644: dt=0.080000, rms=0.405 (0.207%), neg=0, invalid=96777 iter 0, gcam->neg = 13 after 6 iterations, nbhd size=1, neg = 0 0645: dt=0.028000, rms=0.405 (0.074%), neg=0, invalid=96777 iter 0, gcam->neg = 8 after 6 iterations, nbhd size=1, neg = 0 0646: dt=0.028000, rms=0.405 (0.078%), neg=0, invalid=96777 iter 0, gcam->neg = 15 after 7 iterations, nbhd size=1, neg = 0 0647: dt=0.028000, rms=0.404 (0.135%), neg=0, invalid=96777 iter 0, gcam->neg = 23 after 16 iterations, nbhd size=2, neg = 0 0648: dt=0.028000, rms=0.404 (0.149%), neg=0, invalid=96777 iter 0, gcam->neg = 36 after 15 iterations, nbhd size=2, neg = 0 0649: dt=0.028000, rms=0.403 (0.181%), neg=0, invalid=96777 iter 0, gcam->neg = 61 after 9 iterations, nbhd size=1, neg = 0 0650: dt=0.028000, rms=0.402 (0.200%), neg=0, invalid=96777 iter 0, gcam->neg = 70 after 9 iterations, nbhd size=1, neg = 0 0651: dt=0.028000, rms=0.401 (0.189%), neg=0, invalid=96777 iter 0, gcam->neg = 87 after 17 iterations, nbhd size=2, neg = 0 0652: dt=0.028000, rms=0.401 (0.152%), neg=0, invalid=96777 iter 0, gcam->neg = 91 after 11 iterations, nbhd size=1, neg = 0 0653: dt=0.028000, rms=0.400 (0.154%), neg=0, invalid=96777 iter 0, gcam->neg = 97 after 11 iterations, nbhd size=1, neg = 0 0654: dt=0.028000, rms=0.399 (0.131%), neg=0, invalid=96777 iter 0, gcam->neg = 104 after 20 iterations, nbhd size=2, neg = 0 0655: dt=0.028000, rms=0.399 (0.070%), neg=0, invalid=96777 iter 0, gcam->neg = 125 after 13 iterations, nbhd size=1, neg = 0 0656: dt=0.028000, rms=0.399 (0.034%), neg=0, invalid=96777 0657: dt=0.000000, rms=0.399 (0.000%), neg=0, invalid=96777 writing output transformation to transforms/talairach.m3z... GCAMwrite registration took 3 hours, 20 minutes and 41 seconds. #-------------------------------------- #@# CA Reg Inv Tue Jul 26 19:25:45 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri mri_ca_register -invert-and-save transforms/talairach.m3z Loading, Inverting, Saving, Exiting ... Reading transforms/talairach.m3z Inverting GCAM Saving inverse #-------------------------------------- #@# Remove Neck Tue Jul 26 19:27:12 EDT 2016 mri_remove_neck -radius 25 nu.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca nu_noneck.mgz erasing everything more than 25 mm from possible brain reading atlas '/usr/local/freesurfer/average/RB_all_2008-03-26.gca'... reading input volume 'nu.mgz'... reading transform 'transforms/talairach.m3z'... removing structures at least 25 mm from brain... 11544922 nonbrain voxels erased writing output to nu_noneck.mgz... nonbrain removal took 1 minutes and 37 seconds. #-------------------------------------- #@# SkullLTA Tue Jul 26 19:28:49 EDT 2016 mri_em_register -skull -t transforms/talairach.lta nu_noneck.mgz /usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca transforms/talairach_with_skull_2.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 using previously computed transform transforms/talairach.lta reading 1 input volumes... logging results to talairach_with_skull_2.log reading '/usr/local/freesurfer/average/RB_all_withskull_2008-03-26.gca'... average std = 23.1 using min determinant for regularization = 53.4 0 singular and 5702 ill-conditioned covariance matrices regularized reading 'nu_noneck.mgz'... freeing gibbs priors...done. bounding unknown intensity as < 20.2 or > 943.7 total sample mean = 92.0 (1443 zeros) ************************************************ spacing=8, using 3481 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=13.0 skull bounding box = (50, 62, 24) --> (214, 200, 218) using (105, 108, 121) as brain centroid... mean wm in atlas = 126, using box (85,91,97) --> (125, 124,144) to find MRI wm before smoothing, mri peak at 104 after smoothing, mri peak at 103, scaling input intensities by 1.223 scaling channel 0 by 1.2233 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.3, old_max_log_p =-4.0 (thresh=-4.0) 1.054 -0.049 -0.005 -8.206; 0.045 1.178 0.173 -72.971; -0.000 -0.117 1.048 3.671; 0.000 0.000 0.000 1.000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 1 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.3 (thresh=-4.2) 1.030 -0.079 -0.078 7.698; 0.077 1.153 0.167 -73.025; 0.071 -0.125 1.084 -9.031; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.049 -0.081 -0.080 5.484; 0.078 1.175 0.171 -76.665; 0.071 -0.125 1.084 -9.031; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.049 -0.081 -0.080 5.484; 0.078 1.175 0.171 -76.665; 0.071 -0.125 1.084 -9.031; 0.000 0.000 0.000 1.000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.048 -0.091 -0.072 5.809; 0.085 1.174 0.152 -74.577; 0.064 -0.105 1.086 -11.109; 0.000 0.000 0.000 1.000; **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-4.2, old_max_log_p =-4.2 (thresh=-4.2) 1.048 -0.091 -0.072 5.809; 0.085 1.174 0.152 -74.577; 0.064 -0.105 1.086 -11.109; 0.000 0.000 0.000 1.000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3481 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.04783 -0.09134 -0.07203 5.80876; 0.08524 1.17441 0.15212 -74.57736; 0.06363 -0.10504 1.08633 -11.10901; 0.00000 0.00000 0.00000 1.00000; nsamples 3481 Quasinewton: input matrix 1.04783 -0.09134 -0.07203 5.80876; 0.08524 1.17441 0.15212 -74.57736; 0.06363 -0.10504 1.08633 -11.10901; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 007: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.048 -0.091 -0.072 5.809; 0.085 1.174 0.152 -74.577; 0.064 -0.105 1.086 -11.109; 0.000 0.000 0.000 1.000; pass 1, spacing 8: log(p) = -4.2 (old=-4.0) transform before final EM align: 1.048 -0.091 -0.072 5.809; 0.085 1.174 0.152 -74.577; 0.064 -0.105 1.086 -11.109; 0.000 0.000 0.000 1.000; ************************************************** EM alignment process ... Computing final MAP estimate using 382743 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.04783 -0.09134 -0.07203 5.80876; 0.08524 1.17441 0.15212 -74.57736; 0.06363 -0.10504 1.08633 -11.10901; 0.00000 0.00000 0.00000 1.00000; nsamples 382743 Quasinewton: input matrix 1.04783 -0.09134 -0.07203 5.80876; 0.08524 1.17441 0.15212 -74.57736; 0.06363 -0.10504 1.08633 -11.10901; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 009: -log(p) = 4.6 tol 0.000000 final transform: 1.048 -0.091 -0.072 5.809; 0.085 1.174 0.152 -74.577; 0.064 -0.105 1.086 -11.109; 0.000 0.000 0.000 1.000; writing output transformation to transforms/talairach_with_skull_2.lta... registration took 21 minutes and 21 seconds. #-------------------------------------- #@# SubCort Seg Tue Jul 26 19:50:10 EDT 2016 mri_ca_label -align norm.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz sysname Linux hostname xubuntu-VirtualBox machine i686 setenv SUBJECTS_DIR /usr/local/freesurfer/subjects cd /usr/local/freesurfer/subjects/jmcoreg/mri mri_ca_label -align norm.mgz transforms/talairach.m3z /usr/local/freesurfer/average/RB_all_2008-03-26.gca aseg.auto_noCCseg.mgz renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 reading 1 input volumes... reading classifier array from /usr/local/freesurfer/average/RB_all_2008-03-26.gca... reading input volume from norm.mgz... average std[0] = 6.9 reading transform from transforms/talairach.m3z... Atlas used for the 3D morph was /usr/local/freesurfer/average/RB_all_2008-03-26.gca average std = 6.9 using min determinant for regularization = 4.7 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.15151 (27) mri peak = 0.14647 (17) Left_Lateral_Ventricle (4): linear fit = 0.65 x + 0.0 (6380 voxels, overlap=0.030) Left_Lateral_Ventricle (4): linear fit = 0.65 x + 0.0 (6380 voxels, peak = 18), gca=17.7 gca peak = 0.14982 (20) mri peak = 0.17426 (17) Right_Lateral_Ventricle (43): linear fit = 0.71 x + 0.0 (5067 voxels, overlap=0.155) Right_Lateral_Ventricle (43): linear fit = 0.71 x + 0.0 (5067 voxels, peak = 14), gca=14.3 gca peak = 0.28003 (97) mri peak = 0.14182 (101) Right_Pallidum (52): linear fit = 1.03 x + 0.0 (275 voxels, overlap=1.013) Right_Pallidum (52): linear fit = 1.03 x + 0.0 (275 voxels, peak = 100), gca=100.4 gca peak = 0.18160 (96) mri peak = 0.12897 (101) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (309 voxels, overlap=0.832) Left_Pallidum (13): linear fit = 1.04 x + 0.0 (309 voxels, peak = 100), gca=100.3 gca peak = 0.27536 (62) mri peak = 0.12287 (72) Right_Hippocampus (53): linear fit = 1.11 x + 0.0 (719 voxels, overlap=0.316) Right_Hippocampus (53): linear fit = 1.11 x + 0.0 (719 voxels, peak = 69), gca=68.5 gca peak = 0.32745 (63) mri peak = 0.09549 (71) Left_Hippocampus (17): linear fit = 1.08 x + 0.0 (570 voxels, overlap=0.647) Left_Hippocampus (17): linear fit = 1.08 x + 0.0 (570 voxels, peak = 68), gca=67.7 gca peak = 0.08597 (105) mri peak = 0.11601 (108) Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (24961 voxels, overlap=0.653) Right_Cerebral_White_Matter (41): linear fit = 1.02 x + 0.0 (24961 voxels, peak = 108), gca=107.6 gca peak = 0.09209 (106) mri peak = 0.08452 (109) Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (25712 voxels, overlap=0.613) Left_Cerebral_White_Matter (2): linear fit = 1.04 x + 0.0 (25712 voxels, peak = 111), gca=110.8 gca peak = 0.07826 (63) mri peak = 0.04038 (76) Left_Cerebral_Cortex (3): linear fit = 1.23 x + 0.0 (37556 voxels, overlap=0.302) Left_Cerebral_Cortex (3): linear fit = 1.23 x + 0.0 (37556 voxels, peak = 77), gca=77.2 gca peak = 0.08598 (64) mri peak = 0.04233 (77) Right_Cerebral_Cortex (42): linear fit = 1.23 x + 0.0 (34441 voxels, overlap=0.271) Right_Cerebral_Cortex (42): linear fit = 1.23 x + 0.0 (34441 voxels, peak = 78), gca=78.4 gca peak = 0.24164 (71) mri peak = 0.14168 (91) Right_Caudate (50): linear fit = 1.24 x + 0.0 (847 voxels, overlap=0.020) Right_Caudate (50): linear fit = 1.24 x + 0.0 (847 voxels, peak = 88), gca=87.7 gca peak = 0.18227 (75) mri peak = 0.18093 (92) Left_Caudate (11): linear fit = 1.20 x + 0.0 (515 voxels, overlap=0.017) Left_Caudate (11): linear fit = 1.20 x + 0.0 (515 voxels, peak = 90), gca=89.6 gca peak = 0.10629 (62) mri peak = 0.07293 (77) Left_Cerebellum_Cortex (8): linear fit = 1.25 x + 0.0 (14612 voxels, overlap=0.006) Left_Cerebellum_Cortex (8): linear fit = 1.25 x + 0.0 (14612 voxels, peak = 77), gca=77.2 gca peak = 0.11668 (59) mri peak = 0.06772 (75) Right_Cerebellum_Cortex (47): linear fit = 1.23 x + 0.0 (15642 voxels, overlap=0.151) Right_Cerebellum_Cortex (47): linear fit = 1.23 x + 0.0 (15642 voxels, peak = 72), gca=72.3 gca peak = 0.17849 (88) mri peak = 0.11572 (95) Left_Cerebellum_White_Matter (7): linear fit = 1.09 x + 0.0 (4534 voxels, overlap=0.431) Left_Cerebellum_White_Matter (7): linear fit = 1.09 x + 0.0 (4534 voxels, peak = 95), gca=95.5 gca peak = 0.16819 (86) mri peak = 0.11019 (91) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (5290 voxels, overlap=0.592) Right_Cerebellum_White_Matter (46): linear fit = 1.08 x + 0.0 (5290 voxels, peak = 92), gca=92.5 gca peak = 0.41688 (64) mri peak = 0.12525 (75) Left_Amygdala (18): linear fit = 1.20 x + 0.0 (248 voxels, overlap=0.064) Left_Amygdala (18): linear fit = 1.20 x + 0.0 (248 voxels, peak = 76), gca=76.5 gca peak = 0.42394 (62) mri peak = 0.12999 (77) Right_Amygdala (54): linear fit = 1.21 x + 0.0 (337 voxels, overlap=0.488) Right_Amygdala (54): linear fit = 1.21 x + 0.0 (337 voxels, peak = 75), gca=74.7 gca peak = 0.10041 (96) mri peak = 0.08713 (103) Left_Thalamus_Proper (10): linear fit = 1.10 x + 0.0 (3727 voxels, overlap=0.453) Left_Thalamus_Proper (10): linear fit = 1.10 x + 0.0 (3727 voxels, peak = 105), gca=105.1 gca peak = 0.13978 (88) mri peak = 0.08455 (103) Right_Thalamus_Proper (49): linear fit = 1.13 x + 0.0 (3189 voxels, overlap=0.262) Right_Thalamus_Proper (49): linear fit = 1.13 x + 0.0 (3189 voxels, peak = 100), gca=99.9 gca peak = 0.08514 (81) mri peak = 0.07972 (94) Left_Putamen (12): linear fit = 1.10 x + 0.0 (994 voxels, overlap=0.471) Left_Putamen (12): linear fit = 1.10 x + 0.0 (994 voxels, peak = 89), gca=88.7 gca peak = 0.09624 (82) mri peak = 0.08511 (87) Right_Putamen (51): linear fit = 1.12 x + 0.0 (1217 voxels, overlap=0.438) Right_Putamen (51): linear fit = 1.12 x + 0.0 (1217 voxels, peak = 92), gca=92.2 gca peak = 0.07543 (88) mri peak = 0.06855 (95) Brain_Stem (16): linear fit = 1.09 x + 0.0 (12161 voxels, overlap=0.658) Brain_Stem (16): linear fit = 1.09 x + 0.0 (12161 voxels, peak = 95), gca=95.5 gca peak = 0.12757 (95) mri peak = 0.08990 (106) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1020 voxels, overlap=0.009) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (1020 voxels, peak = 106), gca=105.9 gca peak = 0.17004 (92) mri peak = 0.10286 (106) Left_VentralDC (28): linear fit = 1.11 x + 0.0 (1235 voxels, overlap=0.180) Left_VentralDC (28): linear fit = 1.11 x + 0.0 (1235 voxels, peak = 102), gca=101.7 gca peak = 0.21361 (36) mri peak = 0.26471 (23) gca peak = 0.26069 (23) mri peak = 0.24675 (20) Fourth_Ventricle (15): linear fit = 0.77 x + 0.0 (231 voxels, overlap=0.068) Fourth_Ventricle (15): linear fit = 0.77 x + 0.0 (231 voxels, peak = 18), gca=17.8 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.31795 (35) gca peak Third_Ventricle = 0.21361 (36) gca peak CSF = 0.14367 (38) gca peak Left_Accumbens_area = 0.57033 (70) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.65201 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.31129 (32) gca peak Right_Accumbens_area = 0.30219 (72) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.72939 (42) gca peak WM_hypointensities = 0.14821 (82) gca peak non_WM_hypointensities = 0.10354 (53) gca peak Optic_Chiasm = 0.34849 (76) not using caudate to estimate GM means estimating mean gm scale to be 1.17 x + 0.0 estimating mean wm scale to be 1.03 x + 0.0 estimating mean csf scale to be 0.71 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.21595 (18) mri peak = 0.14647 (17) Left_Lateral_Ventricle (4): linear fit = 1.03 x + 0.0 (6380 voxels, overlap=0.926) Left_Lateral_Ventricle (4): linear fit = 1.03 x + 0.0 (6380 voxels, peak = 19), gca=18.6 gca peak = 0.19392 (15) mri peak = 0.17426 (17) Right_Lateral_Ventricle (43): linear fit = 0.99 x + 0.0 (5067 voxels, overlap=0.827) Right_Lateral_Ventricle (43): linear fit = 0.99 x + 0.0 (5067 voxels, peak = 15), gca=14.8 gca peak = 0.28027 (101) mri peak = 0.14182 (101) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (275 voxels, overlap=1.009) Right_Pallidum (52): linear fit = 1.00 x + 0.0 (275 voxels, peak = 100), gca=100.5 gca peak = 0.18297 (100) mri peak = 0.12897 (101) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (309 voxels, overlap=1.004) Left_Pallidum (13): linear fit = 1.00 x + 0.0 (309 voxels, peak = 100), gca=100.0 gca peak = 0.23468 (68) mri peak = 0.12287 (72) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (719 voxels, overlap=0.990) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (719 voxels, peak = 68), gca=68.0 gca peak = 0.32092 (68) mri peak = 0.09549 (71) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (570 voxels, overlap=1.003) Left_Hippocampus (17): linear fit = 1.00 x + 0.0 (570 voxels, peak = 68), gca=68.0 gca peak = 0.08344 (108) mri peak = 0.11601 (108) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (24961 voxels, overlap=0.715) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (24961 voxels, peak = 108), gca=108.0 gca peak = 0.08576 (111) mri peak = 0.08452 (109) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (25712 voxels, overlap=0.753) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (25712 voxels, peak = 111), gca=111.0 gca peak = 0.06414 (77) mri peak = 0.04038 (76) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (37556 voxels, overlap=0.910) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (37556 voxels, peak = 76), gca=75.8 gca peak = 0.07099 (77) mri peak = 0.04233 (77) Right_Cerebral_Cortex (42): linear fit = 0.98 x + 0.0 (34441 voxels, overlap=0.873) Right_Cerebral_Cortex (42): linear fit = 0.98 x + 0.0 (34441 voxels, peak = 75), gca=75.1 gca peak = 0.25298 (91) mri peak = 0.14168 (91) Right_Caudate (50): linear fit = 1.00 x + 0.0 (847 voxels, overlap=0.999) Right_Caudate (50): linear fit = 1.00 x + 0.0 (847 voxels, peak = 91), gca=91.0 gca peak = 0.14376 (89) mri peak = 0.18093 (92) Left_Caudate (11): linear fit = 1.00 x + 0.0 (515 voxels, overlap=0.627) Left_Caudate (11): linear fit = 1.00 x + 0.0 (515 voxels, peak = 89), gca=89.4 gca peak = 0.08897 (77) mri peak = 0.07293 (77) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (14612 voxels, overlap=0.939) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (14612 voxels, peak = 77), gca=76.6 gca peak = 0.10427 (73) mri peak = 0.06772 (75) Right_Cerebellum_Cortex (47): linear fit = 0.99 x + 0.0 (15642 voxels, overlap=0.964) Right_Cerebellum_Cortex (47): linear fit = 0.99 x + 0.0 (15642 voxels, peak = 72), gca=71.9 gca peak = 0.16649 (96) mri peak = 0.11572 (95) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4534 voxels, overlap=0.977) Left_Cerebellum_White_Matter (7): linear fit = 1.00 x + 0.0 (4534 voxels, peak = 96), gca=95.5 gca peak = 0.15715 (93) mri peak = 0.11019 (91) Right_Cerebellum_White_Matter (46): linear fit = 0.99 x + 0.0 (5290 voxels, overlap=0.983) Right_Cerebellum_White_Matter (46): linear fit = 0.99 x + 0.0 (5290 voxels, peak = 92), gca=91.6 gca peak = 0.32380 (76) mri peak = 0.12525 (75) Left_Amygdala (18): linear fit = 0.98 x + 0.0 (248 voxels, overlap=1.005) Left_Amygdala (18): linear fit = 0.98 x + 0.0 (248 voxels, peak = 74), gca=74.1 gca peak = 0.31848 (75) mri peak = 0.12999 (77) Right_Amygdala (54): linear fit = 1.01 x + 0.0 (337 voxels, overlap=1.027) Right_Amygdala (54): linear fit = 1.01 x + 0.0 (337 voxels, peak = 76), gca=76.1 gca peak = 0.09356 (103) mri peak = 0.08713 (103) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (3727 voxels, overlap=0.902) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (3727 voxels, peak = 102), gca=102.5 gca peak = 0.11046 (100) mri peak = 0.08455 (103) Right_Thalamus_Proper (49): linear fit = 1.01 x + 0.0 (3189 voxels, overlap=0.950) Right_Thalamus_Proper (49): linear fit = 1.01 x + 0.0 (3189 voxels, peak = 102), gca=101.5 gca peak = 0.09559 (90) mri peak = 0.07972 (94) Left_Putamen (12): linear fit = 0.99 x + 0.0 (994 voxels, overlap=0.865) Left_Putamen (12): linear fit = 0.99 x + 0.0 (994 voxels, peak = 89), gca=88.7 gca peak = 0.08283 (87) mri peak = 0.08511 (87) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1217 voxels, overlap=0.921) Right_Putamen (51): linear fit = 1.00 x + 0.0 (1217 voxels, peak = 87), gca=87.0 gca peak = 0.07302 (96) mri peak = 0.06855 (95) Brain_Stem (16): linear fit = 1.00 x + 0.0 (12161 voxels, overlap=0.842) Brain_Stem (16): linear fit = 1.00 x + 0.0 (12161 voxels, peak = 96), gca=96.5 gca peak = 0.11158 (106) mri peak = 0.08990 (106) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1020 voxels, overlap=0.764) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (1020 voxels, peak = 105), gca=105.5 gca peak = 0.15598 (102) mri peak = 0.10286 (106) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1235 voxels, overlap=0.864) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (1235 voxels, peak = 102), gca=102.0 gca peak = 0.25517 (27) mri peak = 0.26471 (23) gca peak = 0.27522 (18) mri peak = 0.24675 (20) Fourth_Ventricle (15): linear fit = 1.00 x + 0.0 (231 voxels, overlap=0.787) Fourth_Ventricle (15): linear fit = 1.00 x + 0.0 (231 voxels, peak = 18), gca=18.0 gca peak Unknown = 0.94427 ( 0) gca peak Left_Inf_Lat_Vent = 0.27281 (38) gca peak Third_Ventricle = 0.25517 (27) gca peak CSF = 0.19364 (33) gca peak Left_Accumbens_area = 0.45260 (83) gca peak Left_undetermined = 1.00000 (35) gca peak Left_vessel = 0.63638 (62) gca peak Left_choroid_plexus = 0.09084 (48) gca peak Right_Inf_Lat_Vent = 0.28428 (35) gca peak Right_Accumbens_area = 0.25706 (89) gca peak Right_vessel = 0.83418 (60) gca peak Right_choroid_plexus = 0.10189 (48) gca peak Fifth_Ventricle = 0.45329 (31) gca peak WM_hypointensities = 0.14174 (84) gca peak non_WM_hypointensities = 0.10275 (55) gca peak Optic_Chiasm = 0.34697 (76) not using caudate to estimate GM means estimating mean gm scale to be 0.99 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 1.01 x + 0.0 saving intensity scales to aseg.auto_noCCseg.label_intensities.txt saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt 38467 gm and wm labels changed (%25 to gray, %75 to white out of all changed labels) 429 hippocampal voxels changed. 0 amygdala voxels changed. pass 1: 76958 changed. image ll: -2.225, PF=1.000 pass 2: 13573 changed. image ll: -2.221, PF=1.000 pass 3: 4712 changed. writing labeled volume to aseg.auto_noCCseg.mgz... auto-labeling took 22 minutes and 58 seconds. mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/cc_up.lta jmcoreg will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as /usr/local/freesurfer/subjects/jmcoreg/mri/transforms/cc_up.lta reading aseg from /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.auto_noCCseg.mgz reading norm from /usr/local/freesurfer/subjects/jmcoreg/mri/norm.mgz 44564 voxels in left wm, 70544 in right wm, xrange [125, 138] searching rotation angles z=[-8 6], y=[-10 4] searching scale 1 Z rot -7.5 searching scale 1 Z rot -7.3 searching scale 1 Z rot -7.0 searching scale 1 Z rot -6.8 searching scale 1 Z rot -6.5 searching scale 1 Z rot -6.3 searching scale 1 Z rot -6.0 searching scale 1 Z rot -5.8 searching scale 1 Z rot -5.5 searching scale 1 Z rot -5.3 searching scale 1 Z rot -5.0 searching scale 1 Z rot -4.8 searching scale 1 Z rot -4.5 searching scale 1 Z rot -4.3 searching scale 1 Z rot -4.0 searching scale 1 Z rot -3.8 searching scale 1 Z rot -3.5 searching scale 1 Z rot -3.3 searching scale 1 Z rot -3.0 searching scale 1 Z rot -2.8 searching scale 1 Z rot -2.5 searching scale 1 Z rot -2.3 searching scale 1 Z rot -2.0 searching scale 1 Z rot -1.8 searching scale 1 Z rot -1.5 searching scale 1 Z rot -1.3 searching scale 1 Z rot -1.0 searching scale 1 Z rot -0.8 searching scale 1 Z rot -0.5 searching scale 1 Z rot -0.3 searching scale 1 Z rot -0.0 searching scale 1 Z rot 0.2 searching scale 1 Z rot 0.5 searching scale 1 Z rot 0.7 searching scale 1 Z rot 1.0 searching scale 1 Z rot 1.2 searching scale 1 Z rot 1.5 searching scale 1 Z rot 1.7 searching scale 1 Z rot 2.0 searching scale 1 Z rot 2.2 searching scale 1 Z rot 2.5 searching scale 1 Z rot 2.7 searching scale 1 Z rot 3.0 searching scale 1 Z rot 3.2 searching scale 1 Z rot 3.5 searching scale 1 Z rot 3.7 searching scale 1 Z rot 4.0 searching scale 1 Z rot 4.2 searching scale 1 Z rot 4.5 searching scale 1 Z rot 4.7 searching scale 1 Z rot 5.0 searching scale 1 Z rot 5.2 searching scale 1 Z rot 5.5 searching scale 1 Z rot 5.7 searching scale 1 Z rot 6.0 searching scale 1 Z rot 6.2 global minimum found at slice 132.4, rotations (-2.51, -0.55) final transformation (x=132.4, yr=-2.508, zr=-0.550): 0.999 0.010 -0.044 -0.530; -0.010 1.000 0.000 5.227; 0.044 -0.000 0.999 9.313; 0.000 0.000 0.000 1.000; updating x range to be [125, 133] in xformed coordinates best xformed slice 128 cc center is found at 128 152 107 eigenvectors: -0.008 -0.012 1.000; 0.057 -0.998 -0.012; 0.998 0.057 0.008; error in mid anterior detected - correcting... writing aseg with callosum to /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.auto.mgz... corpus callosum matter segmentation took 0.9 minutes #-------------------------------------- #@# Merge ASeg Tue Jul 26 20:14:04 EDT 2016 cp aseg.auto.mgz aseg.mgz #-------------------------------------------- #@# Intensity Normalization2 Tue Jul 26 20:14:04 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri mri_normalize -aseg aseg.mgz -mask brainmask.mgz norm.mgz brain.mgz using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading from norm.mgz... Reading aseg aseg.mgz normalizing image... processing with aseg removing outliers in the aseg WM... 2022 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 111 white matter peak found at 109 gm peak at 83 (83), valley at 30 (30) csf peak at 17, setting threshold to 61 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 111 white matter peak found at 110 gm peak at 83 (83), valley at 31 (31) csf peak at 17, setting threshold to 61 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 3 minutes and 35 seconds. #-------------------------------------------- #@# Mask BFS Tue Jul 26 20:17:41 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1417783 voxels in mask (pct= 8.45) Writing masked volume to brain.finalsurfs.mgz...done. #-------------------------------------------- #@# WM Segmentation Tue Jul 26 20:17:42 EDT 2016 mri_segment brain.mgz wm.seg.mgz doing initial intensity segmentation... using local statistics to label ambiguous voxels... computing class statistics for intensity windows... WM (103.0): 103.6 +- 8.3 [80.0 --> 125.0] GM (73.0) : 69.4 +- 14.8 [30.0 --> 96.0] setting bottom of white matter range to 84.2 setting top of gray matter range to 98.9 doing initial intensity segmentation... using local statistics to label ambiguous voxels... using local geometry to label remaining ambiguous voxels... reclassifying voxels using Gaussian border classifier... removing voxels with positive offset direction... smoothing T1 volume with sigma = 0.250 removing 1-dimensional structures... 8306 sparsely connected voxels removed... thickening thin strands.... 20 segments, 3696 filled 12955 bright non-wm voxels segmented. 4491 diagonally connected voxels added... white matter segmentation took 2.2 minutes writing output to wm.seg.mgz... mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 0.69 minutes reading wm segmentation from wm.seg.mgz... 606 voxels added to wm to prevent paths from MTL structures to cortex 5046 additional wm voxels added 0 additional wm voxels added SEG EDIT: 80723 voxels turned on, 9905 voxels turned off. propagating editing to output volume from wm.seg.mgz 115,126,128 old 93 new 93 115,126,128 old 93 new 93 writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 55 found - 55 modified | TOTAL: 55 pass 2 (xy+): 0 found - 55 modified | TOTAL: 55 pass 1 (xy-): 59 found - 59 modified | TOTAL: 114 pass 2 (xy-): 0 found - 59 modified | TOTAL: 114 pass 1 (yz+): 75 found - 75 modified | TOTAL: 189 pass 2 (yz+): 0 found - 75 modified | TOTAL: 189 pass 1 (yz-): 71 found - 71 modified | TOTAL: 260 pass 2 (yz-): 0 found - 71 modified | TOTAL: 260 pass 1 (xz+): 53 found - 53 modified | TOTAL: 313 pass 2 (xz+): 0 found - 53 modified | TOTAL: 313 pass 1 (xz-): 56 found - 56 modified | TOTAL: 369 pass 2 (xz-): 0 found - 56 modified | TOTAL: 369 Iteration Number : 1 pass 1 (+++): 65 found - 65 modified | TOTAL: 65 pass 2 (+++): 0 found - 65 modified | TOTAL: 65 pass 1 (+++): 82 found - 82 modified | TOTAL: 147 pass 2 (+++): 0 found - 82 modified | TOTAL: 147 pass 1 (+++): 104 found - 104 modified | TOTAL: 251 pass 2 (+++): 0 found - 104 modified | TOTAL: 251 pass 1 (+++): 70 found - 70 modified | TOTAL: 321 pass 2 (+++): 0 found - 70 modified | TOTAL: 321 Iteration Number : 1 pass 1 (++): 119 found - 119 modified | TOTAL: 119 pass 2 (++): 0 found - 119 modified | TOTAL: 119 pass 1 (+-): 94 found - 94 modified | TOTAL: 213 pass 2 (+-): 0 found - 94 modified | TOTAL: 213 pass 1 (--): 147 found - 147 modified | TOTAL: 360 pass 2 (--): 0 found - 147 modified | TOTAL: 360 pass 1 (-+): 89 found - 89 modified | TOTAL: 449 pass 2 (-+): 0 found - 89 modified | TOTAL: 449 Iteration Number : 2 pass 1 (xy+): 9 found - 9 modified | TOTAL: 9 pass 2 (xy+): 0 found - 9 modified | TOTAL: 9 pass 1 (xy-): 16 found - 16 modified | TOTAL: 25 pass 2 (xy-): 0 found - 16 modified | TOTAL: 25 pass 1 (yz+): 17 found - 17 modified | TOTAL: 42 pass 2 (yz+): 0 found - 17 modified | TOTAL: 42 pass 1 (yz-): 20 found - 20 modified | TOTAL: 62 pass 2 (yz-): 0 found - 20 modified | TOTAL: 62 pass 1 (xz+): 16 found - 16 modified | TOTAL: 78 pass 2 (xz+): 0 found - 16 modified | TOTAL: 78 pass 1 (xz-): 25 found - 25 modified | TOTAL: 103 pass 2 (xz-): 0 found - 25 modified | TOTAL: 103 Iteration Number : 2 pass 1 (+++): 13 found - 13 modified | TOTAL: 13 pass 2 (+++): 0 found - 13 modified | TOTAL: 13 pass 1 (+++): 0 found - 0 modified | TOTAL: 13 pass 1 (+++): 12 found - 12 modified | TOTAL: 25 pass 2 (+++): 0 found - 12 modified | TOTAL: 25 pass 1 (+++): 4 found - 4 modified | TOTAL: 29 pass 2 (+++): 0 found - 4 modified | TOTAL: 29 Iteration Number : 2 pass 1 (++): 13 found - 13 modified | TOTAL: 13 pass 2 (++): 0 found - 13 modified | TOTAL: 13 pass 1 (+-): 13 found - 13 modified | TOTAL: 26 pass 2 (+-): 0 found - 13 modified | TOTAL: 26 pass 1 (--): 6 found - 6 modified | TOTAL: 32 pass 2 (--): 0 found - 6 modified | TOTAL: 32 pass 1 (-+): 14 found - 14 modified | TOTAL: 46 pass 2 (-+): 0 found - 14 modified | TOTAL: 46 Iteration Number : 3 pass 1 (xy+): 3 found - 3 modified | TOTAL: 3 pass 2 (xy+): 0 found - 3 modified | TOTAL: 3 pass 1 (xy-): 0 found - 0 modified | TOTAL: 3 pass 1 (yz+): 5 found - 5 modified | TOTAL: 8 pass 2 (yz+): 0 found - 5 modified | TOTAL: 8 pass 1 (yz-): 0 found - 0 modified | TOTAL: 8 pass 1 (xz+): 2 found - 2 modified | TOTAL: 10 pass 2 (xz+): 0 found - 2 modified | TOTAL: 10 pass 1 (xz-): 3 found - 3 modified | TOTAL: 13 pass 2 (xz-): 0 found - 3 modified | TOTAL: 13 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 1 found - 1 modified | TOTAL: 1 pass 2 (+-): 0 found - 1 modified | TOTAL: 1 pass 1 (--): 0 found - 0 modified | TOTAL: 1 pass 1 (-+): 3 found - 3 modified | TOTAL: 4 pass 2 (-+): 0 found - 3 modified | TOTAL: 4 Iteration Number : 4 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 1334 (out of 560579: 0.237968) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done #-------------------------------------------- #@# Fill Tue Jul 26 20:20:42 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.auto_noCCseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.054 -0.049 -0.005 -8.206; 0.045 1.178 0.173 -72.971; -0.000 -0.117 1.048 3.671; 0.000 0.000 0.000 1.000; voxel to talairach voxel transform 1.054 -0.049 -0.005 -8.206; 0.045 1.178 0.173 -72.971; -0.000 -0.117 1.048 3.671; 0.000 0.000 0.000 1.000; reading segmented volume aseg.auto_noCCseg.mgz... Looking for area (min, max) = (350, 1400) area[0] = 3397 (min = 350, max = 1400), aspect = 0.75 (min = 0.10, max = 0.75) need search nearby using seed (126, 93, 104), TAL = (2.0, -24.0, 35.0) talairach voxel to voxel transform 0.947 0.039 -0.002 10.631; -0.036 0.834 -0.138 61.063; -0.004 0.093 0.939 3.346; 0.000 0.000 0.000 1.000; segmentation indicates cc at (126, 93, 104) --> (2.0, -24.0, 35.0) done. writing output to filled.mgz... filling took 0.8 minutes talairach cc position changed to (2.00, -24.00, 35.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(20.00, -24.00, 35.00) SRC: (116.40, 120.42, 109.31) search lh wm seed point around talairach space (-16.00, -24.00, 35.00), SRC: (150.50, 119.13, 109.18) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram to separate WM into two hemispheres ... Find the largest connected component for each hemisphere ... #-------------------------------------------- #@# Tessellate lh Tue Jul 26 20:21:31 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 8 found - 8 modified | TOTAL: 8 pass 2 (xy+): 0 found - 8 modified | TOTAL: 8 pass 1 (xy-): 7 found - 7 modified | TOTAL: 15 pass 2 (xy-): 0 found - 7 modified | TOTAL: 15 pass 1 (yz+): 11 found - 11 modified | TOTAL: 26 pass 2 (yz+): 0 found - 11 modified | TOTAL: 26 pass 1 (yz-): 5 found - 5 modified | TOTAL: 31 pass 2 (yz-): 0 found - 5 modified | TOTAL: 31 pass 1 (xz+): 8 found - 8 modified | TOTAL: 39 pass 2 (xz+): 0 found - 8 modified | TOTAL: 39 pass 1 (xz-): 4 found - 4 modified | TOTAL: 43 pass 2 (xz-): 0 found - 4 modified | TOTAL: 43 Iteration Number : 1 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 2 pass 1 (+++): 5 found - 5 modified | TOTAL: 7 pass 2 (+++): 0 found - 5 modified | TOTAL: 7 pass 1 (+++): 0 found - 0 modified | TOTAL: 7 Iteration Number : 1 pass 1 (++): 3 found - 3 modified | TOTAL: 3 pass 2 (++): 0 found - 3 modified | TOTAL: 3 pass 1 (+-): 4 found - 4 modified | TOTAL: 7 pass 2 (+-): 0 found - 4 modified | TOTAL: 7 pass 1 (--): 4 found - 4 modified | TOTAL: 11 pass 2 (--): 0 found - 4 modified | TOTAL: 11 pass 1 (-+): 2 found - 2 modified | TOTAL: 13 pass 2 (-+): 0 found - 2 modified | TOTAL: 13 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 1 found - 1 modified | TOTAL: 1 pass 2 (yz-): 0 found - 1 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 64 (out of 276792: 0.023122) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ slice 40: 845 vertices, 927 faces slice 50: 6069 vertices, 6355 faces slice 60: 15385 vertices, 15826 faces slice 70: 26299 vertices, 26783 faces slice 80: 38424 vertices, 39006 faces slice 90: 50988 vertices, 51570 faces slice 100: 63431 vertices, 64083 faces slice 110: 76057 vertices, 76744 faces slice 120: 88421 vertices, 89130 faces slice 130: 100109 vertices, 100817 faces slice 140: 110434 vertices, 111074 faces slice 150: 118046 vertices, 118668 faces slice 160: 125976 vertices, 126577 faces slice 170: 132685 vertices, 133225 faces slice 180: 137507 vertices, 137984 faces slice 190: 140601 vertices, 141019 faces slice 200: 141506 vertices, 141846 faces slice 210: 141506 vertices, 141846 faces slice 220: 141506 vertices, 141846 faces slice 230: 141506 vertices, 141846 faces slice 240: 141506 vertices, 141846 faces slice 250: 141506 vertices, 141846 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 141506 voxel in cpt #1: X=-340 [v=141506,e=425538,f=283692] located at (-30.302185, -21.030006, -6.130666) For the whole surface: X=-340 [v=141506,e=425538,f=283692] One single component has been found nothing to do done #-------------------------------------------- #@# Smooth1 lh Tue Jul 26 20:21:37 EDT 2016 mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix /usr/local/freesurfer/subjects/jmcoreg/scripts setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Tue Jul 26 20:21:41 EDT 2016 mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix /usr/local/freesurfer/subjects/jmcoreg/scripts avg radius = 46.3 mm, total surface area = 73051 mm^2 writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.4 minutes Not saving sulc step 000: RMS=0.122 (target=0.015) step 005: RMS=0.096 (target=0.015) step 010: RMS=0.083 (target=0.015) step 015: RMS=0.077 (target=0.015) step 020: RMS=0.074 (target=0.015) step 025: RMS=0.072 (target=0.015) step 030: RMS=0.071 (target=0.015) step 035: RMS=0.070 (target=0.015) step 040: RMS=0.069 (target=0.015) step 045: RMS=0.068 (target=0.015) step 050: RMS=0.067 (target=0.015) step 055: RMS=0.067 (target=0.015) step 060: RMS=0.067 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere lh Tue Jul 26 20:22:07 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 1.01 +- 0.64 (0.00-->7.99) (max @ vno 76864 --> 78219) face area 0.03 +- 0.04 (-0.33-->0.69) scaling brain by 0.326... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.479, avgs=0 005/300: dt: 0.9000, rms radial error=176.219, avgs=0 010/300: dt: 0.9000, rms radial error=175.661, avgs=0 015/300: dt: 0.9000, rms radial error=174.929, avgs=0 020/300: dt: 0.9000, rms radial error=174.096, avgs=0 025/300: dt: 0.9000, rms radial error=173.206, avgs=0 030/300: dt: 0.9000, rms radial error=172.287, avgs=0 035/300: dt: 0.9000, rms radial error=171.351, avgs=0 040/300: dt: 0.9000, rms radial error=170.406, avgs=0 045/300: dt: 0.9000, rms radial error=169.459, avgs=0 050/300: dt: 0.9000, rms radial error=168.513, avgs=0 055/300: dt: 0.9000, rms radial error=167.569, avgs=0 060/300: dt: 0.9000, rms radial error=166.628, avgs=0 065/300: dt: 0.9000, rms radial error=165.692, avgs=0 070/300: dt: 0.9000, rms radial error=164.761, avgs=0 075/300: dt: 0.9000, rms radial error=163.834, avgs=0 080/300: dt: 0.9000, rms radial error=162.913, avgs=0 085/300: dt: 0.9000, rms radial error=161.996, avgs=0 090/300: dt: 0.9000, rms radial error=161.084, avgs=0 095/300: dt: 0.9000, rms radial error=160.176, avgs=0 100/300: dt: 0.9000, rms radial error=159.274, avgs=0 105/300: dt: 0.9000, rms radial error=158.376, avgs=0 110/300: dt: 0.9000, rms radial error=157.483, avgs=0 115/300: dt: 0.9000, rms radial error=156.595, avgs=0 120/300: dt: 0.9000, rms radial error=155.711, avgs=0 125/300: dt: 0.9000, rms radial error=154.833, avgs=0 130/300: dt: 0.9000, rms radial error=153.959, avgs=0 135/300: dt: 0.9000, rms radial error=153.091, avgs=0 140/300: dt: 0.9000, rms radial error=152.227, avgs=0 145/300: dt: 0.9000, rms radial error=151.369, avgs=0 150/300: dt: 0.9000, rms radial error=150.515, avgs=0 155/300: dt: 0.9000, rms radial error=149.666, avgs=0 160/300: dt: 0.9000, rms radial error=148.822, avgs=0 165/300: dt: 0.9000, rms radial error=147.982, avgs=0 170/300: dt: 0.9000, rms radial error=147.147, avgs=0 175/300: dt: 0.9000, rms radial error=146.316, avgs=0 180/300: dt: 0.9000, rms radial error=145.490, avgs=0 185/300: dt: 0.9000, rms radial error=144.669, avgs=0 190/300: dt: 0.9000, rms radial error=143.853, avgs=0 195/300: dt: 0.9000, rms radial error=143.043, avgs=0 200/300: dt: 0.9000, rms radial error=142.237, avgs=0 205/300: dt: 0.9000, rms radial error=141.435, avgs=0 210/300: dt: 0.9000, rms radial error=140.638, avgs=0 215/300: dt: 0.9000, rms radial error=139.845, avgs=0 220/300: dt: 0.9000, rms radial error=139.056, avgs=0 225/300: dt: 0.9000, rms radial error=138.272, avgs=0 230/300: dt: 0.9000, rms radial error=137.493, avgs=0 235/300: dt: 0.9000, rms radial error=136.718, avgs=0 240/300: dt: 0.9000, rms radial error=135.947, avgs=0 245/300: dt: 0.9000, rms radial error=135.180, avgs=0 250/300: dt: 0.9000, rms radial error=134.417, avgs=0 255/300: dt: 0.9000, rms radial error=133.659, avgs=0 260/300: dt: 0.9000, rms radial error=132.905, avgs=0 265/300: dt: 0.9000, rms radial error=132.156, avgs=0 270/300: dt: 0.9000, rms radial error=131.410, avgs=0 275/300: dt: 0.9000, rms radial error=130.669, avgs=0 280/300: dt: 0.9000, rms radial error=129.932, avgs=0 285/300: dt: 0.9000, rms radial error=129.199, avgs=0 290/300: dt: 0.9000, rms radial error=128.470, avgs=0 295/300: dt: 0.9000, rms radial error=127.745, avgs=0 300/300: dt: 0.9000, rms radial error=127.025, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 16496.95 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00012 epoch 2 (K=40.0), pass 1, starting sse = 2847.22 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00020 epoch 3 (K=160.0), pass 1, starting sse = 398.83 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.04/10 = 0.00430 epoch 4 (K=640.0), pass 1, starting sse = 80.04 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.13/13 = 0.00973 final writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.06 hours distance error %100000.00 #-------------------------------------------- #@# Fix Topology lh Tue Jul 26 20:25:41 EDT 2016 cp ../surf/lh.orig.nofix ../surf/lh.orig cp ../surf/lh.inflated.nofix ../surf/lh.inflated /usr/local/freesurfer/subjects/jmcoreg/scripts mris_fix_topology -mgz -sphere qsphere.nofix -ga -seed 1234 jmcoreg lh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ before topology correction, eno=-340 (nv=141506, nf=283692, ne=425538, g=171) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 11 iterations marking ambiguous vertices... 51798 ambiguous faces found in tessellation segmenting defects... 97 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 26 into 5 -merging segment 11 into 6 -merging segment 15 into 6 -merging segment 19 into 6 -merging segment 27 into 6 -merging segment 30 into 6 -merging segment 37 into 6 -merging segment 20 into 6 -merging segment 6 into 8 -merging segment 13 into 17 -merging segment 22 into 21 -merging segment 24 into 21 -merging segment 46 into 43 -merging segment 50 into 49 -merging segment 54 into 53 -merging segment 67 into 75 -merging segment 91 into 88 80 defects to be corrected 0 vertices coincident reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -8.3872 (-4.1936) -vertex loglikelihood: -5.8696 (-2.9348) -normal dot loglikelihood: -3.5573 (-3.5573) -quad curv loglikelihood: -5.9342 (-2.9671) Total Loglikelihood : -23.7483 CORRECTING DEFECT 0 (vertices=43, convex hull=31) After retessellation of defect 0, euler #=-65 (112431,330736,218240) : difference with theory (-77) = -12 CORRECTING DEFECT 1 (vertices=72, convex hull=87) After retessellation of defect 1, euler #=-64 (112441,330803,218298) : difference with theory (-76) = -12 CORRECTING DEFECT 2 (vertices=158, convex hull=79) After retessellation of defect 2, euler #=-63 (112481,330955,218411) : difference with theory (-75) = -12 CORRECTING DEFECT 3 (vertices=10, convex hull=20) After retessellation of defect 3, euler #=-62 (112482,330965,218421) : difference with theory (-74) = -12 CORRECTING DEFECT 4 (vertices=40, convex hull=45) After retessellation of defect 4, euler #=-61 (112490,331005,218454) : difference with theory (-73) = -12 CORRECTING DEFECT 5 (vertices=2011, convex hull=639) After retessellation of defect 5, euler #=-60 (112964,332770,219746) : difference with theory (-72) = -12 CORRECTING DEFECT 6 (vertices=1658, convex hull=704) After retessellation of defect 6, euler #=-64 (113591,335053,221398) : difference with theory (-71) = -7 CORRECTING DEFECT 7 (vertices=15773, convex hull=4410) After retessellation of defect 7, euler #=-76 (118352,351903,233475) : difference with theory (-70) = 6 CORRECTING DEFECT 8 (vertices=51, convex hull=29) After retessellation of defect 8, euler #=-75 (118358,351931,233498) : difference with theory (-69) = 6 CORRECTING DEFECT 9 (vertices=57, convex hull=93) After retessellation of defect 9, euler #=-74 (118376,352023,233573) : difference with theory (-68) = 6 CORRECTING DEFECT 10 (vertices=75, convex hull=92) After retessellation of defect 10, euler #=-73 (118395,352122,233654) : difference with theory (-67) = 6 CORRECTING DEFECT 11 (vertices=28, convex hull=34) After retessellation of defect 11, euler #=-72 (118398,352143,233673) : difference with theory (-66) = 6 CORRECTING DEFECT 12 (vertices=313, convex hull=359) After retessellation of defect 12, euler #=-71 (118506,352639,234062) : difference with theory (-65) = 6 CORRECTING DEFECT 13 (vertices=19, convex hull=23) After retessellation of defect 13, euler #=-69 (118507,352646,234070) : difference with theory (-64) = 5 CORRECTING DEFECT 14 (vertices=8, convex hull=22) After retessellation of defect 14, euler #=-68 (118507,352653,234078) : difference with theory (-63) = 5 CORRECTING DEFECT 15 (vertices=321, convex hull=290) After retessellation of defect 15, euler #=-65 (118634,353186,234487) : difference with theory (-62) = 3 CORRECTING DEFECT 16 (vertices=56, convex hull=27) After retessellation of defect 16, euler #=-64 (118635,353196,234497) : difference with theory (-61) = 3 CORRECTING DEFECT 17 (vertices=43, convex hull=73) After retessellation of defect 17, euler #=-63 (118649,353266,234554) : difference with theory (-60) = 3 CORRECTING DEFECT 18 (vertices=47, convex hull=25) After retessellation of defect 18, euler #=-62 (118653,353285,234570) : difference with theory (-59) = 3 CORRECTING DEFECT 19 (vertices=1107, convex hull=730) After retessellation of defect 19, euler #=-61 (119048,354828,235719) : difference with theory (-58) = 3 CORRECTING DEFECT 20 (vertices=52, convex hull=31) After retessellation of defect 20, euler #=-60 (119054,354856,235742) : difference with theory (-57) = 3 CORRECTING DEFECT 21 (vertices=297, convex hull=243) After retessellation of defect 21, euler #=-59 (119120,355175,235996) : difference with theory (-56) = 3 CORRECTING DEFECT 22 (vertices=128, convex hull=137) After retessellation of defect 22, euler #=-58 (119182,355419,236179) : difference with theory (-55) = 3 CORRECTING DEFECT 23 (vertices=46, convex hull=72) After retessellation of defect 23, euler #=-57 (119205,355517,236255) : difference with theory (-54) = 3 CORRECTING DEFECT 24 (vertices=34, convex hull=58) After retessellation of defect 24, euler #=-56 (119221,355586,236309) : difference with theory (-53) = 3 CORRECTING DEFECT 25 (vertices=28, convex hull=63) After retessellation of defect 25, euler #=-55 (119230,355636,236351) : difference with theory (-52) = 3 CORRECTING DEFECT 26 (vertices=18, convex hull=24) After retessellation of defect 26, euler #=-54 (119232,355648,236362) : difference with theory (-51) = 3 CORRECTING DEFECT 27 (vertices=39, convex hull=25) After retessellation of defect 27, euler #=-53 (119234,355660,236373) : difference with theory (-50) = 3 CORRECTING DEFECT 28 (vertices=22, convex hull=16) After retessellation of defect 28, euler #=-52 (119237,355675,236386) : difference with theory (-49) = 3 CORRECTING DEFECT 29 (vertices=600, convex hull=233) After retessellation of defect 29, euler #=-51 (119255,355842,236536) : difference with theory (-48) = 3 CORRECTING DEFECT 30 (vertices=15, convex hull=32) After retessellation of defect 30, euler #=-50 (119258,355863,236555) : difference with theory (-47) = 3 CORRECTING DEFECT 31 (vertices=54, convex hull=47) After retessellation of defect 31, euler #=-48 (119263,355900,236589) : difference with theory (-46) = 2 CORRECTING DEFECT 32 (vertices=77, convex hull=106) After retessellation of defect 32, euler #=-47 (119288,356021,236686) : difference with theory (-45) = 2 CORRECTING DEFECT 33 (vertices=6, convex hull=23) After retessellation of defect 33, euler #=-46 (119290,356032,236696) : difference with theory (-44) = 2 CORRECTING DEFECT 34 (vertices=49, convex hull=73) After retessellation of defect 34, euler #=-45 (119304,356104,236755) : difference with theory (-43) = 2 CORRECTING DEFECT 35 (vertices=59, convex hull=52) After retessellation of defect 35, euler #=-44 (119321,356176,236811) : difference with theory (-42) = 2 CORRECTING DEFECT 36 (vertices=736, convex hull=597) After retessellation of defect 36, euler #=-43 (119428,356813,237342) : difference with theory (-41) = 2 CORRECTING DEFECT 37 (vertices=6, convex hull=23) After retessellation of defect 37, euler #=-42 (119429,356825,237354) : difference with theory (-40) = 2 CORRECTING DEFECT 38 (vertices=108, convex hull=119) After retessellation of defect 38, euler #=-41 (119465,356983,237477) : difference with theory (-39) = 2 CORRECTING DEFECT 39 (vertices=483, convex hull=260) After retessellation of defect 39, euler #=-40 (119691,357806,238075) : difference with theory (-38) = 2 CORRECTING DEFECT 40 (vertices=31, convex hull=40) After retessellation of defect 40, euler #=-39 (119697,357838,238102) : difference with theory (-37) = 2 CORRECTING DEFECT 41 (vertices=6, convex hull=18) After retessellation of defect 41, euler #=-38 (119699,357849,238112) : difference with theory (-36) = 2 CORRECTING DEFECT 42 (vertices=6, convex hull=16) After retessellation of defect 42, euler #=-37 (119700,357856,238119) : difference with theory (-35) = 2 CORRECTING DEFECT 43 (vertices=876, convex hull=562) After retessellation of defect 43, euler #=-36 (120030,359133,239067) : difference with theory (-34) = 2 CORRECTING DEFECT 44 (vertices=25, convex hull=50) After retessellation of defect 44, euler #=-35 (120040,359179,239104) : difference with theory (-33) = 2 CORRECTING DEFECT 45 (vertices=46, convex hull=74) After retessellation of defect 45, euler #=-34 (120074,359314,239206) : difference with theory (-32) = 2 CORRECTING DEFECT 46 (vertices=90, convex hull=80) After retessellation of defect 46, euler #=-33 (120083,359373,239257) : difference with theory (-31) = 2 CORRECTING DEFECT 47 (vertices=112, convex hull=104) After retessellation of defect 47, euler #=-32 (120123,359539,239384) : difference with theory (-30) = 2 CORRECTING DEFECT 48 (vertices=73, convex hull=92) After retessellation of defect 48, euler #=-31 (120160,359691,239500) : difference with theory (-29) = 2 CORRECTING DEFECT 49 (vertices=39, convex hull=30) After retessellation of defect 49, euler #=-30 (120166,359718,239522) : difference with theory (-28) = 2 CORRECTING DEFECT 50 (vertices=18, convex hull=21) After retessellation of defect 50, euler #=-29 (120168,359729,239532) : difference with theory (-27) = 2 CORRECTING DEFECT 51 (vertices=34, convex hull=69) After retessellation of defect 51, euler #=-28 (120177,359782,239577) : difference with theory (-26) = 2 CORRECTING DEFECT 52 (vertices=25, convex hull=26) After retessellation of defect 52, euler #=-27 (120180,359799,239592) : difference with theory (-25) = 2 CORRECTING DEFECT 53 (vertices=68, convex hull=82) After retessellation of defect 53, euler #=-26 (120208,359917,239683) : difference with theory (-24) = 2 CORRECTING DEFECT 54 (vertices=66, convex hull=81) After retessellation of defect 54, euler #=-25 (120244,360061,239792) : difference with theory (-23) = 2 CORRECTING DEFECT 55 (vertices=90, convex hull=50) After retessellation of defect 55, euler #=-24 (120258,360119,239837) : difference with theory (-22) = 2 CORRECTING DEFECT 56 (vertices=88, convex hull=92) After retessellation of defect 56, euler #=-23 (120294,360268,239951) : difference with theory (-21) = 2 CORRECTING DEFECT 57 (vertices=81, convex hull=76) After retessellation of defect 57, euler #=-22 (120335,360423,240066) : difference with theory (-20) = 2 CORRECTING DEFECT 58 (vertices=20, convex hull=28) After retessellation of defect 58, euler #=-21 (120337,360438,240080) : difference with theory (-19) = 2 CORRECTING DEFECT 59 (vertices=218, convex hull=101) After retessellation of defect 59, euler #=-19 (120365,360565,240181) : difference with theory (-18) = 1 CORRECTING DEFECT 60 (vertices=44, convex hull=63) After retessellation of defect 60, euler #=-18 (120392,360671,240261) : difference with theory (-17) = 1 CORRECTING DEFECT 61 (vertices=81, convex hull=65) After retessellation of defect 61, euler #=-17 (120424,360793,240352) : difference with theory (-16) = 1 CORRECTING DEFECT 62 (vertices=34, convex hull=26) After retessellation of defect 62, euler #=-16 (120430,360817,240371) : difference with theory (-15) = 1 CORRECTING DEFECT 63 (vertices=102, convex hull=58) After retessellation of defect 63, euler #=-15 (120450,360900,240435) : difference with theory (-14) = 1 CORRECTING DEFECT 64 (vertices=67, convex hull=105) After retessellation of defect 64, euler #=-14 (120472,361010,240524) : difference with theory (-13) = 1 CORRECTING DEFECT 65 (vertices=21, convex hull=39) After retessellation of defect 65, euler #=-13 (120475,361031,240543) : difference with theory (-12) = 1 CORRECTING DEFECT 66 (vertices=64, convex hull=42) After retessellation of defect 66, euler #=-12 (120482,361069,240575) : difference with theory (-11) = 1 CORRECTING DEFECT 67 (vertices=43, convex hull=95) After retessellation of defect 67, euler #=-11 (120507,361185,240667) : difference with theory (-10) = 1 CORRECTING DEFECT 68 (vertices=46, convex hull=24) After retessellation of defect 68, euler #=-10 (120517,361221,240694) : difference with theory (-9) = 1 CORRECTING DEFECT 69 (vertices=41, convex hull=45) After retessellation of defect 69, euler #=-9 (120526,361267,240732) : difference with theory (-8) = 1 CORRECTING DEFECT 70 (vertices=51, convex hull=35) After retessellation of defect 70, euler #=-8 (120530,361300,240762) : difference with theory (-7) = 1 CORRECTING DEFECT 71 (vertices=19, convex hull=34) After retessellation of defect 71, euler #=-7 (120533,361319,240779) : difference with theory (-6) = 1 CORRECTING DEFECT 72 (vertices=1298, convex hull=160) After retessellation of defect 72, euler #=-5 (120574,361520,240941) : difference with theory (-5) = 0 CORRECTING DEFECT 73 (vertices=26, convex hull=53) After retessellation of defect 73, euler #=-4 (120583,361569,240982) : difference with theory (-4) = 0 CORRECTING DEFECT 74 (vertices=108, convex hull=86) After retessellation of defect 74, euler #=-3 (120600,361659,241056) : difference with theory (-3) = 0 CORRECTING DEFECT 75 (vertices=49, convex hull=87) After retessellation of defect 75, euler #=-2 (120626,361774,241146) : difference with theory (-2) = 0 CORRECTING DEFECT 76 (vertices=38, convex hull=49) After retessellation of defect 76, euler #=-1 (120628,361802,241173) : difference with theory (-1) = 0 CORRECTING DEFECT 77 (vertices=12, convex hull=33) After retessellation of defect 77, euler #=0 (120631,361821,241190) : difference with theory (0) = 0 CORRECTING DEFECT 78 (vertices=128, convex hull=111) After retessellation of defect 78, euler #=1 (120677,362004,241328) : difference with theory (1) = 0 CORRECTING DEFECT 79 (vertices=20, convex hull=53) After retessellation of defect 79, euler #=2 (120687,362055,241370) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.91 +- 0.34 (0.02-->14.12) (max @ vno 44204 --> 50884) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.91 +- 0.34 (0.02-->14.12) (max @ vno 44204 --> 50884) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 281 mutations (35.6%), 508 crossovers (64.4%), 743 vertices were eliminated building final representation... 20819 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=120687, nf=241370, ne=362055, g=0) writing corrected surface to /usr/local/freesurfer/subjects/jmcoreg/surf/lh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 222.2 minutes 0 defective edges removing intersecting faces 000: 3684 intersecting 001: 513 intersecting 002: 315 intersecting 003: 227 intersecting 004: 165 intersecting 005: 163 intersecting 006: 122 intersecting 007: 116 intersecting 008: 109 intersecting expanding nbhd size to 2 009: 128 intersecting 010: 81 intersecting 011: 79 intersecting 012: 74 intersecting 013: 73 intersecting 014: 67 intersecting 015: 66 intersecting 016: 64 intersecting 017: 63 intersecting expanding nbhd size to 3 018: 63 intersecting 019: 60 intersecting expanding nbhd size to 4 020: 61 intersecting 021: 58 intersecting 022: 55 intersecting 023: 54 intersecting 024: 53 intersecting expanding nbhd size to 5 025: 53 intersecting expanding nbhd size to 6 026: 53 intersecting 027: 52 intersecting 028: 50 intersecting expanding nbhd size to 7 029: 52 intersecting 030: 51 intersecting expanding nbhd size to 8 031: 54 intersecting 032: 47 intersecting 033: 40 intersecting 034: 35 intersecting 035: 33 intersecting 036: 32 intersecting 037: 30 intersecting expanding nbhd size to 9 038: 35 intersecting 039: 26 intersecting expanding nbhd size to 10 040: 27 intersecting expanding nbhd size to 11 041: 27 intersecting expanding nbhd size to 12 042: 31 intersecting expanding nbhd size to 13 043: 32 intersecting 044: 22 intersecting expanding nbhd size to 14 045: 22 intersecting mris_euler_number ../surf/lh.orig euler # = v-e+f = 2g-2: 120687 - 362055 + 241370 = 2 --> 0 holes F =2V-4: 241370 = 241374-4 (0) 2E=3F: 724110 = 724110 (0) total defect index = 0 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_remove_intersection ../surf/lh.orig ../surf/lh.orig intersection removal took 0.02 hours removing intersecting faces 000: 2054 intersecting 001: 510 intersecting 002: 303 intersecting 003: 214 intersecting 004: 174 intersecting 005: 157 intersecting 006: 127 intersecting 007: 120 intersecting expanding nbhd size to 2 008: 120 intersecting 009: 119 intersecting 010: 93 intersecting 011: 78 intersecting 012: 70 intersecting 013: 68 intersecting 014: 67 intersecting 015: 65 intersecting expanding nbhd size to 3 016: 65 intersecting expanding nbhd size to 4 017: 66 intersecting 018: 64 intersecting 019: 61 intersecting 020: 57 intersecting expanding nbhd size to 5 021: 58 intersecting 022: 55 intersecting 023: 51 intersecting expanding nbhd size to 6 024: 51 intersecting expanding nbhd size to 7 025: 51 intersecting 026: 49 intersecting expanding nbhd size to 8 027: 50 intersecting expanding nbhd size to 9 028: 52 intersecting 029: 49 intersecting expanding nbhd size to 10 030: 52 intersecting 031: 43 intersecting 032: 41 intersecting 033: 37 intersecting 034: 31 intersecting 035: 26 intersecting expanding nbhd size to 11 036: 27 intersecting expanding nbhd size to 12 037: 30 intersecting expanding nbhd size to 13 038: 30 intersecting expanding nbhd size to 14 039: 31 intersecting 040: 25 intersecting expanding nbhd size to 15 041: 30 intersecting expanding nbhd size to 16 042: 36 intersecting 043: 31 intersecting 044: 28 intersecting 045: 22 intersecting expanding nbhd size to 17 046: 23 intersecting 047: 21 intersecting expanding nbhd size to 18 048: 22 intersecting expanding nbhd size to 19 049: 24 intersecting expanding nbhd size to 20 050: 31 intersecting 051: 23 intersecting expanding nbhd size to 21 052: 29 intersecting 053: 28 intersecting 054: 27 intersecting 055: 22 intersecting expanding nbhd size to 22 056: 24 intersecting expanding nbhd size to 23 057: 30 intersecting expanding nbhd size to 24 058: 33 intersecting expanding nbhd size to 25 059: 33 intersecting 060: 16 intersecting 061: 10 intersecting 062: 6 intersecting expanding nbhd size to 26 063: 8 intersecting 064: 7 intersecting 065: 5 intersecting expanding nbhd size to 27 066: 8 intersecting expanding nbhd size to 28 067: 14 intersecting expanding nbhd size to 29 068: 15 intersecting 069: 13 intersecting 070: 9 intersecting expanding nbhd size to 30 071: 10 intersecting 072: 7 intersecting 073: 6 intersecting expanding nbhd size to 31 074: 6 intersecting expanding nbhd size to 32 075: 6 intersecting expanding nbhd size to 33 076: 6 intersecting 077: 4 intersecting expanding nbhd size to 34 078: 8 intersecting 079: 4 intersecting 080: 3 intersecting expanding nbhd size to 35 081: 3 intersecting expanding nbhd size to 36 082: 3 intersecting expanding nbhd size to 37 083: 3 intersecting 084: 2 intersecting expanding nbhd size to 38 085: 2 intersecting expanding nbhd size to 39 086: 3 intersecting expanding nbhd size to 40 087: 3 intersecting expanding nbhd size to 41 088: 5 intersecting expanding nbhd size to 42 089: 7 intersecting 090: 3 intersecting 091: 2 intersecting writing corrected surface to ../surf/lh.orig rm ../surf/lh.inflated #-------------------------------------------- #@# Make White Surf lh Wed Jul 27 00:09:02 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_make_surfaces -noaparc -whiteonly -mgz -T1 brain.finalsurfs jmcoreg lh only generating white matter surface not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/filled.mgz... reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/brain.finalsurfs.mgz... reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz... 10320 bright wm thresholded. 12527 bright non-wm voxels segmented. reading original surface position from /usr/local/freesurfer/subjects/jmcoreg/surf/lh.orig... computing class statistics... border white: 261039 voxels (1.56%) border gray 319152 voxels (1.90%) WM (96.0): 96.1 +- 6.5 [70.0 --> 110.0] GM (87.0) : 84.7 +- 11.3 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 70.7 (was 70) setting MAX_BORDER_WHITE to 106.5 (was 105) setting MIN_BORDER_WHITE to 82.0 (was 85) setting MAX_CSF to 59.5 (was 40) setting MAX_GRAY to 93.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 76.4 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 48.2 (was 40) repositioning cortical surface to gray/white boundary reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.79 +- 0.26 (0.01-->5.79) (max @ vno 116923 --> 116925) face area 0.26 +- 0.15 (0.00-->5.68) mean absolute distance = 1.06 +- 1.36 4979 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=100, GM=82 mean inside = 94.2, mean outside = 85.2 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group mean border=89.3, 1129 (1129) missing vertices, mean dist -0.1 [1.3 (%44.2)->0.9 (%55.8))] %52 local maxima, %41 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=xubun, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.30 (0.03-->5.91) (max @ vno 116925 --> 117806) face area 0.26 +- 0.16 (0.00-->6.21) mean absolute distance = 0.54 +- 0.95 4524 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=5103259.5, rms=9.72 001: dt: 0.5000, sse=5023280.0, rms=8.186 (0.000%) 002: dt: 0.5000, sse=5015669.5, rms=7.048 (0.000%) 003: dt: 0.5000, sse=4988587.0, rms=6.209 (0.000%) 004: dt: 0.5000, sse=4898796.5, rms=5.571 (0.000%) 005: dt: 0.5000, sse=4819302.5, rms=5.064 (0.000%) 006: dt: 0.5000, sse=4709776.5, rms=4.729 (0.000%) 007: dt: 0.5000, sse=4654139.5, rms=4.474 (0.000%) 008: dt: 0.5000, sse=4610792.0, rms=4.282 (0.000%) 009: dt: 0.5000, sse=4557201.5, rms=4.059 (0.000%) 010: dt: 0.5000, sse=4516262.0, rms=3.871 (0.000%) 011: dt: 0.5000, sse=4479054.5, rms=3.619 (0.000%) 012: dt: 0.5000, sse=4423523.0, rms=3.448 (0.000%) 013: dt: 0.5000, sse=4415352.0, rms=3.290 (0.000%) 014: dt: 0.5000, sse=4402282.0, rms=3.082 (0.000%) 015: dt: 0.5000, sse=4400455.0, rms=2.943 (0.000%) 016: dt: 0.5000, sse=4355674.0, rms=2.761 (0.000%) 017: dt: 0.5000, sse=4347675.5, rms=2.698 (0.000%) 018: dt: 0.5000, sse=4331371.0, rms=2.631 (0.000%) rms = 2.59, time step reduction 1 of 3 to 0.250... 019: dt: 0.5000, sse=4315516.5, rms=2.587 (0.000%) 020: dt: 0.2500, sse=3301363.5, rms=2.306 (0.000%) rms = 2.26, time step reduction 2 of 3 to 0.125... 021: dt: 0.2500, sse=3191416.0, rms=2.258 (0.000%) 022: dt: 0.1250, sse=3128083.5, rms=2.201 (0.000%) rms = 2.17, time step reduction 3 of 3 to 0.062... 023: dt: 0.1250, sse=3097413.0, rms=2.172 (0.000%) positioning took 1.9 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group removing 2 vertex label from ripped group mean border=90.5, 1153 (483) missing vertices, mean dist -0.2 [0.7 (%58.6)->0.4 (%41.4))] %60 local maxima, %32 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=xubun, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.88 +- 0.30 (0.03-->5.95) (max @ vno 116925 --> 117806) face area 0.32 +- 0.20 (0.00-->7.27) mean absolute distance = 0.43 +- 0.66 3766 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3307462.2, rms=3.30 024: dt: 0.5000, sse=3577992.2, rms=2.596 (0.000%) 025: dt: 0.5000, sse=3796668.0, rms=2.295 (0.000%) 026: dt: 0.5000, sse=3822548.5, rms=2.208 (0.000%) 027: dt: 0.5000, sse=3891154.8, rms=2.106 (0.000%) rms = 2.11, time step reduction 1 of 3 to 0.250... 028: dt: 0.2500, sse=3539894.2, rms=1.956 (0.000%) 029: dt: 0.2500, sse=3383149.2, rms=1.894 (0.000%) rms = 1.91, time step reduction 2 of 3 to 0.125... rms = 1.87, time step reduction 3 of 3 to 0.062... 030: dt: 0.1250, sse=3347328.2, rms=1.867 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 2 vertex label from ripped group removing 3 vertex label from ripped group removing 1 vertex label from ripped group mean border=91.7, 1302 (400) missing vertices, mean dist -0.2 [0.5 (%60.4)->0.3 (%39.6))] %71 local maxima, %21 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=xubun, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.88 +- 0.30 (0.02-->5.96) (max @ vno 29571 --> 30451) face area 0.32 +- 0.20 (0.00-->7.41) mean absolute distance = 0.37 +- 0.52 3143 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3433857.0, rms=2.72 031: dt: 0.5000, sse=3711213.5, rms=2.163 (0.000%) 032: dt: 0.5000, sse=3892399.0, rms=1.906 (0.000%) rms = 1.99, time step reduction 1 of 3 to 0.250... 033: dt: 0.2500, sse=3625216.5, rms=1.786 (0.000%) rms = 1.77, time step reduction 2 of 3 to 0.125... 034: dt: 0.2500, sse=3540767.5, rms=1.766 (0.000%) 035: dt: 0.1250, sse=3520584.2, rms=1.696 (0.000%) rms = 1.68, time step reduction 3 of 3 to 0.062... 036: dt: 0.1250, sse=3494112.0, rms=1.676 (0.000%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 4 vertex label from ripped group removing 4 vertex label from ripped group removing 4 vertex label from ripped group removing 3 vertex label from ripped group mean border=92.3, 1400 (370) missing vertices, mean dist -0.1 [0.4 (%55.3)->0.3 (%44.7))] %77 local maxima, %14 large gradients and % 1 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=xubun, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white... writing smoothed curvature to lh.curv 000: dt: 0.0000, sse=3512629.0, rms=2.00 037: dt: 0.5000, sse=4199021.5, rms=1.931 (0.000%) 038: dt: 0.5000, sse=4048625.8, rms=1.767 (0.000%) rms = 1.96, time step reduction 1 of 3 to 0.250... 039: dt: 0.2500, sse=3916482.5, rms=1.616 (0.000%) rms = 1.65, time step reduction 2 of 3 to 0.125... rms = 1.58, time step reduction 3 of 3 to 0.062... 040: dt: 0.1250, sse=3885941.5, rms=1.579 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group generating cortex label... 18 non-cortical segments detected only using segment with 1311 vertices erasing segment 0 (vno[0] = 35932) erasing segment 1 (vno[0] = 49380) erasing segment 3 (vno[0] = 53023) erasing segment 4 (vno[0] = 59141) erasing segment 5 (vno[0] = 65111) erasing segment 6 (vno[0] = 74336) erasing segment 7 (vno[0] = 74751) erasing segment 8 (vno[0] = 75433) erasing segment 9 (vno[0] = 76545) erasing segment 10 (vno[0] = 79756) erasing segment 11 (vno[0] = 81401) erasing segment 12 (vno[0] = 82342) erasing segment 13 (vno[0] = 87037) erasing segment 14 (vno[0] = 117127) erasing segment 15 (vno[0] = 120209) erasing segment 16 (vno[0] = 120217) erasing segment 17 (vno[0] = 120243) writing cortex label to /usr/local/freesurfer/subjects/jmcoreg/label/lh.cortex.label... writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/lh.curv writing smoothed area to lh.area writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/lh.area vertex spacing 0.87 +- 0.30 (0.02-->6.00) (max @ vno 116925 --> 117806) face area 0.32 +- 0.20 (0.00-->7.14) refinement took 5.0 minutes #-------------------------------------------- #@# Smooth2 lh Wed Jul 27 00:14:01 EDT 2016 mris_smooth -n 3 -nw -seed 1234 ../surf/lh.white ../surf/lh.smoothwm /usr/local/freesurfer/subjects/jmcoreg/scripts smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 lh Wed Jul 27 00:14:04 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_inflate ../surf/lh.smoothwm ../surf/lh.inflated avg radius = 45.6 mm, total surface area = 69468 mm^2 writing inflated surface to ../surf/lh.inflated writing sulcal depths to ../surf/lh.sulc step 000: RMS=0.120 (target=0.015) step 005: RMS=0.088 (target=0.015) step 010: RMS=0.070 (target=0.015) step 015: RMS=0.059 (target=0.015) step 020: RMS=0.050 (target=0.015) step 025: RMS=0.044 (target=0.015) step 030: RMS=0.037 (target=0.015) step 035: RMS=0.033 (target=0.015) step 040: RMS=0.030 (target=0.015) step 045: RMS=0.026 (target=0.015) step 050: RMS=0.024 (target=0.015) step 055: RMS=0.023 (target=0.015) step 060: RMS=0.021 (target=0.015) inflation complete. inflation took 0.4 minutes mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/lh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 104 vertices thresholded to be in k1 ~ [-0.35 0.55], k2 ~ [-0.16 0.09] total integrated curvature = 0.364*4pi (4.571) --> 1 handles ICI = 1.3, FI = 8.1, variation=140.744 113 vertices thresholded to be in [-0.03 0.03] writing Gaussian curvature to ../surf/lh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.001 106 vertices thresholded to be in [-0.21 0.15] done. writing mean curvature to ../surf/lh.inflated.H...curvature mean = -0.018, std = 0.023 done. #----------------------------------------- #@# Curvature Stats lh Wed Jul 27 00:15:48 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/lh.curv.stats -F smoothwm jmcoreg lh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/lh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ jmcoreg/lh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 275 ] Gb_filter = 0 WARN: S lookup min: -2.152049 WARN: S explicit min: 0.000000 vertex = 792 #-------------------------------------------- #@# Sphere lh Wed Jul 27 00:15:51 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_sphere -seed 1234 ../surf/lh.inflated ../surf/lh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... scaling brain by 0.316... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %19.53 pass 1: epoch 2 of 3 starting distance error %19.48 unfolding complete - removing small folds... starting distance error %19.34 removing remaining folds... final distance error %19.37 MRISunfold() return, current seed 1234 writing spherical brain to ../surf/lh.sphere spherical transformation took 0.64 hours #-------------------------------------------- #@# Surf Reg lh Wed Jul 27 00:54:03 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_register -curv ../surf/lh.sphere /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif ../surf/lh.sphere.reg using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading surface from ../surf/lh.sphere... reading template parameterization from /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 0 randomSeed 0 tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading lh.sulc curvature mean = -0.000, std = 0.598 curvature mean = 0.016, std = 0.930 curvature mean = 0.023, std = 0.883 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (16.00, 0.00, 0.00) sse = 309024.6, tmin=0.7001 d=32.00 min @ (-8.00, -8.00, 8.00) sse = 238861.4, tmin=1.4033 d=16.00 min @ (0.00, 0.00, -4.00) sse = 235516.4, tmin=2.1131 d=8.00 min @ (-2.00, 2.00, 2.00) sse = 226895.2, tmin=2.8276 d=2.00 min @ (0.50, -0.50, 0.00) sse = 226563.6, tmin=4.2752 d=1.00 min @ (-0.25, 0.00, 0.00) sse = 226525.3, tmin=5.0023 d=0.50 min @ (0.12, 0.12, 0.00) sse = 226516.7, tmin=5.7378 tol=1.0e+00, sigma=0.5, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 5.74 min curvature mean = -0.020, std = 0.956 curvature mean = 0.009, std = 0.953 curvature mean = -0.021, std = 0.968 curvature mean = 0.003, std = 0.979 curvature mean = -0.022, std = 0.971 curvature mean = 0.001, std = 0.991 2 Reading smoothwm curvature mean = -0.044, std = 0.398 curvature mean = 0.001, std = 0.067 curvature mean = 0.062, std = 0.266 curvature mean = 0.001, std = 0.080 curvature mean = 0.040, std = 0.391 curvature mean = 0.001, std = 0.087 curvature mean = 0.027, std = 0.491 curvature mean = 0.001, std = 0.089 curvature mean = 0.010, std = 0.594 MRISregister() return, current seed 0 writing registered surface to ../surf/lh.sphere.reg... expanding nbhd size to 1 #-------------------------------------------- #@# Jacobian white lh Wed Jul 27 01:12:55 EDT 2016 mris_jacobian ../surf/lh.white ../surf/lh.sphere.reg ../surf/lh.jacobian_white reading surface from ../surf/lh.white... writing curvature file ../surf/lh.jacobian_white #-------------------------------------------- #@# AvgCurv lh Wed Jul 27 01:12:56 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mrisp_paint -a 5 /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif#6 ../surf/lh.sphere.reg ../surf/lh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/lh.sphere.reg... reading template parameterization from /usr/local/freesurfer/average/lh.average.curvature.filled.buckner40.tif... writing curvature file to ../surf/lh.avg_curv... #----------------------------------------- #@# Cortical Parc lh Wed Jul 27 01:12:58 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg lh ../surf/lh.sphere.reg /usr/local/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/lh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /usr/local/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... reading color table from GCSA file.... average std = 1.0 using min determinant for regularization = 0.011 0 singular and 384 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1010 labels changed using aseg relabeling using gibbs priors... 000: 2616 changed, 120687 examined... 001: 652 changed, 11165 examined... 002: 148 changed, 3509 examined... 003: 45 changed, 893 examined... 004: 10 changed, 271 examined... 005: 0 changed, 63 examined... 191 labels changed using aseg 000: 92 total segments, 53 labels (307 vertices) changed 001: 43 total segments, 4 labels (4 vertices) changed 002: 39 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 42 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 2134 vertices marked for relabeling... 2134 labels changed in reclassification. writing output to ../label/lh.aparc.annot... classification took 0 minutes and 31 seconds. #-------------------------------------------- #@# Make Pial Surf lh Wed Jul 27 01:13:29 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_make_surfaces -white NOWRITE -mgz -T1 brain.finalsurfs jmcoreg lh -white NOWRITE indicates that white, curv, area, and cortex.label files will not be written... INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/filled.mgz... reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/brain.finalsurfs.mgz... reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz... 10320 bright wm thresholded. 12527 bright non-wm voxels segmented. reading original surface position from /usr/local/freesurfer/subjects/jmcoreg/surf/lh.orig... computing class statistics... border white: 261039 voxels (1.56%) border gray 319152 voxels (1.90%) WM (96.0): 96.1 +- 6.5 [70.0 --> 110.0] GM (87.0) : 84.7 +- 11.3 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 70.7 (was 70) setting MAX_BORDER_WHITE to 106.5 (was 105) setting MIN_BORDER_WHITE to 82.0 (was 85) setting MAX_CSF to 59.5 (was 40) setting MAX_GRAY to 93.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 76.4 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 48.2 (was 40) smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=100, GM=82 mean inside = 94.2, mean outside = 85.2 smoothing surface for 5 iterations... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.79 +- 0.26 (0.01-->5.79) (max @ vno 116923 --> 116925) face area 0.26 +- 0.15 (0.00-->5.68) mean absolute distance = 1.06 +- 1.37 5027 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 7 with 589 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 9 with 4 points - only 0.00% unknown mean border=89.3, 1129 (1129) missing vertices, mean dist -0.1 [1.3 (%44.3)->0.9 (%55.7))] %53 local maxima, %41 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=xubun, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 0 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.30 (0.05-->5.89) (max @ vno 116925 --> 117806) face area 0.26 +- 0.16 (0.00-->6.22) mean absolute distance = 0.54 +- 0.94 4482 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=5115117.5, rms=9.70 001: dt: 0.5000, sse=5043129.5, rms=8.168 (0.000%) 002: dt: 0.5000, sse=5035043.0, rms=7.032 (0.000%) 003: dt: 0.5000, sse=5005663.0, rms=6.195 (0.000%) 004: dt: 0.5000, sse=4916541.0, rms=5.557 (0.000%) 005: dt: 0.5000, sse=4834534.0, rms=5.052 (0.000%) 006: dt: 0.5000, sse=4726011.5, rms=4.718 (0.000%) 007: dt: 0.5000, sse=4670479.5, rms=4.464 (0.000%) 008: dt: 0.5000, sse=4627771.5, rms=4.272 (0.000%) 009: dt: 0.5000, sse=4573407.5, rms=4.050 (0.000%) 010: dt: 0.5000, sse=4535398.5, rms=3.862 (0.000%) 011: dt: 0.5000, sse=4495507.0, rms=3.611 (0.000%) 012: dt: 0.5000, sse=4441035.5, rms=3.440 (0.000%) 013: dt: 0.5000, sse=4428851.5, rms=3.273 (0.000%) 014: dt: 0.5000, sse=4420738.0, rms=3.072 (0.000%) 015: dt: 0.5000, sse=4417534.0, rms=2.938 (0.000%) 016: dt: 0.5000, sse=4370500.5, rms=2.774 (0.000%) 017: dt: 0.5000, sse=4366320.0, rms=2.700 (0.000%) 018: dt: 0.5000, sse=4349176.5, rms=2.645 (0.000%) 019: dt: 0.5000, sse=4345766.5, rms=2.588 (0.000%) rms = 2.55, time step reduction 1 of 3 to 0.250... 020: dt: 0.5000, sse=4333541.5, rms=2.545 (0.000%) 021: dt: 0.2500, sse=3306435.2, rms=2.270 (0.000%) rms = 2.24, time step reduction 2 of 3 to 0.125... 022: dt: 0.2500, sse=3189141.0, rms=2.242 (0.000%) 023: dt: 0.1250, sse=3137080.2, rms=2.163 (0.000%) rms = 2.15, time step reduction 3 of 3 to 0.062... 024: dt: 0.1250, sse=3092009.2, rms=2.149 (0.000%) positioning took 1.9 minutes inhibiting deformation at non-cortical midline structures... deleting segment 4 with 11 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 7 with 4 points - only 0.00% unknown deleting segment 9 with 476 points - only 0.00% unknown deleting segment 14 with 80 points - only 0.00% unknown deleting segment 17 with 35 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 18 with 2 points - only 0.00% unknown mean border=90.5, 1166 (488) missing vertices, mean dist -0.2 [0.7 (%58.5)->0.4 (%41.5))] %60 local maxima, %32 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=xubun, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.88 +- 0.30 (0.03-->5.96) (max @ vno 116925 --> 117806) face area 0.32 +- 0.19 (0.00-->7.28) mean absolute distance = 0.43 +- 0.65 3805 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3308136.0, rms=3.28 025: dt: 0.5000, sse=3588277.2, rms=2.562 (0.000%) 026: dt: 0.5000, sse=3821017.8, rms=2.264 (0.000%) 027: dt: 0.5000, sse=3830241.0, rms=2.187 (0.000%) 028: dt: 0.5000, sse=3874186.5, rms=2.058 (0.000%) rms = 2.09, time step reduction 1 of 3 to 0.250... 029: dt: 0.2500, sse=3532309.8, rms=1.913 (0.000%) 030: dt: 0.2500, sse=3417968.0, rms=1.858 (0.000%) rms = 1.86, time step reduction 2 of 3 to 0.125... rms = 1.83, time step reduction 3 of 3 to 0.062... 031: dt: 0.1250, sse=3372240.2, rms=1.827 (0.000%) positioning took 0.7 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group deleting segment 1 with 577 points - only 0.00% unknown deleting segment 2 with 26 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 3 with 2 points - only 0.00% unknown deleting segment 4 with 11 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 5 with 3 points - only 0.00% unknown mean border=91.7, 1274 (411) missing vertices, mean dist -0.2 [0.5 (%60.4)->0.3 (%39.6))] %71 local maxima, %21 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=xubun, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.88 +- 0.30 (0.05-->5.95) (max @ vno 116925 --> 117806) face area 0.32 +- 0.20 (0.00-->7.44) mean absolute distance = 0.37 +- 0.52 3142 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3460081.0, rms=2.68 032: dt: 0.5000, sse=3728257.8, rms=2.102 (0.000%) 033: dt: 0.5000, sse=3933184.5, rms=1.912 (0.000%) rms = 1.96, time step reduction 1 of 3 to 0.250... 034: dt: 0.2500, sse=3680735.8, rms=1.770 (0.000%) rms = 1.76, time step reduction 2 of 3 to 0.125... 035: dt: 0.2500, sse=3605647.5, rms=1.765 (0.000%) rms = 1.72, time step reduction 3 of 3 to 0.062... 036: dt: 0.1250, sse=3563143.8, rms=1.716 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group deleting segment 2 with 447 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 4 with 87 points - only 0.00% unknown deleting segment 5 with 15 points - only 0.00% unknown deleting segment 6 with 19 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 7 with 3 points - only 0.00% unknown mean border=92.3, 1375 (371) missing vertices, mean dist -0.1 [0.4 (%55.1)->0.3 (%44.9))] %78 local maxima, %15 large gradients and % 1 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=xubun, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3584763.0, rms=2.02 037: dt: 0.5000, sse=4294641.5, rms=1.905 (0.000%) 038: dt: 0.5000, sse=4083926.2, rms=1.780 (0.000%) rms = 1.91, time step reduction 1 of 3 to 0.250... 039: dt: 0.2500, sse=3965286.5, rms=1.599 (0.000%) rms = 1.63, time step reduction 2 of 3 to 0.125... rms = 1.56, time step reduction 3 of 3 to 0.062... 040: dt: 0.1250, sse=3938828.5, rms=1.562 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group smoothing surface for 5 iterations... mean border=70.7, 1163 (1163) missing vertices, mean dist 1.8 [1.1 (%0.1)->2.9 (%99.9))] %28 local maxima, %28 large gradients and %37 min vals, 2183 gradients ignored tol=1.0e-04, sigma=2.0, host=xubun, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=13909900.0, rms=22.91 001: dt: 0.5000, sse=11804993.0, rms=20.710 (0.000%) 002: dt: 0.5000, sse=10072373.0, rms=18.687 (0.000%) 003: dt: 0.5000, sse=8672673.0, rms=16.839 (0.000%) 004: dt: 0.5000, sse=7654502.0, rms=15.146 (0.000%) 005: dt: 0.5000, sse=6949407.0, rms=13.624 (0.000%) 006: dt: 0.5000, sse=6542484.0, rms=12.261 (0.000%) 007: dt: 0.5000, sse=6263513.0, rms=11.026 (0.000%) 008: dt: 0.5000, sse=6068805.5, rms=9.899 (0.000%) 009: dt: 0.5000, sse=6029578.5, rms=8.890 (0.000%) 010: dt: 0.5000, sse=6031178.0, rms=8.019 (0.000%) 011: dt: 0.5000, sse=6124592.0, rms=7.286 (0.000%) 012: dt: 0.5000, sse=6227588.0, rms=6.712 (0.000%) 013: dt: 0.5000, sse=6339505.0, rms=6.270 (0.000%) 014: dt: 0.5000, sse=6419277.0, rms=5.945 (0.000%) 015: dt: 0.5000, sse=6502635.5, rms=5.718 (0.000%) 016: dt: 0.5000, sse=6543841.0, rms=5.556 (0.000%) 017: dt: 0.5000, sse=6594027.5, rms=5.420 (0.000%) 018: dt: 0.5000, sse=6542726.0, rms=5.327 (0.000%) 019: dt: 0.5000, sse=6600043.5, rms=5.262 (0.000%) 020: dt: 0.5000, sse=6581689.0, rms=5.188 (0.000%) rms = 5.15, time step reduction 1 of 3 to 0.250... 021: dt: 0.5000, sse=6604499.5, rms=5.146 (0.000%) 022: dt: 0.2500, sse=4982653.0, rms=4.620 (0.000%) 023: dt: 0.2500, sse=4796964.0, rms=4.465 (0.000%) rms = 4.47, time step reduction 2 of 3 to 0.125... 024: dt: 0.1250, sse=4680084.0, rms=4.386 (0.000%) 025: dt: 0.1250, sse=4483556.0, rms=4.280 (0.000%) rms = 4.24, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=4406296.5, rms=4.242 (0.000%) positioning took 2.1 minutes mean border=67.8, 4265 (371) missing vertices, mean dist 0.3 [0.3 (%29.2)->0.7 (%70.8))] %41 local maxima, %21 large gradients and %28 min vals, 1503 gradients ignored tol=1.0e-04, sigma=1.0, host=xubun, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=5051847.5, rms=6.26 027: dt: 0.5000, sse=5193301.0, rms=5.606 (0.000%) 028: dt: 0.5000, sse=6211112.5, rms=5.338 (0.000%) rms = 5.44, time step reduction 1 of 3 to 0.250... 029: dt: 0.2500, sse=5411578.5, rms=4.812 (0.000%) 030: dt: 0.2500, sse=5101471.5, rms=4.689 (0.000%) rms = 4.76, time step reduction 2 of 3 to 0.125... 031: dt: 0.1250, sse=4999625.5, rms=4.612 (0.000%) 032: dt: 0.1250, sse=4861018.0, rms=4.524 (0.000%) rms = 4.49, time step reduction 3 of 3 to 0.062... 033: dt: 0.1250, sse=4841829.0, rms=4.492 (0.000%) positioning took 0.7 minutes mean border=66.7, 5589 (301) missing vertices, mean dist 0.2 [0.3 (%31.6)->0.5 (%68.4))] %47 local maxima, %15 large gradients and %28 min vals, 1372 gradients ignored tol=1.0e-04, sigma=0.5, host=xubun, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4940906.5, rms=4.92 rms = 5.29, time step reduction 1 of 3 to 0.250... 034: dt: 0.2500, sse=4822008.0, rms=4.693 (0.000%) rms = 4.66, time step reduction 2 of 3 to 0.125... 035: dt: 0.2500, sse=4945381.0, rms=4.659 (0.000%) 036: dt: 0.1250, sse=4873314.5, rms=4.561 (0.000%) 037: dt: 0.1250, sse=4882223.5, rms=4.508 (0.000%) rms = 4.49, time step reduction 3 of 3 to 0.062... 038: dt: 0.1250, sse=4916943.0, rms=4.490 (0.000%) positioning took 0.5 minutes mean border=66.0, 8684 (281) missing vertices, mean dist 0.1 [0.3 (%38.1)->0.4 (%61.9))] %50 local maxima, %11 large gradients and %26 min vals, 1313 gradients ignored tol=1.0e-04, sigma=0.2, host=xubun, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /usr/local/freesurfer/subjects/jmcoreg/surf/lh.pial... writing smoothed curvature to lh.curv.pial 000: dt: 0.0000, sse=4941206.5, rms=4.60 rms = 4.90, time step reduction 1 of 3 to 0.250... 039: dt: 0.2500, sse=4940399.5, rms=4.466 (0.000%) 040: dt: 0.2500, sse=5284577.0, rms=4.396 (0.000%) rms = 4.42, time step reduction 2 of 3 to 0.125... 041: dt: 0.1250, sse=5227857.5, rms=4.336 (0.000%) 042: dt: 0.1250, sse=5212457.0, rms=4.256 (0.000%) 043: dt: 0.1250, sse=5273343.0, rms=4.182 (0.000%) rms = 4.14, time step reduction 3 of 3 to 0.062... 044: dt: 0.1250, sse=5324870.5, rms=4.143 (0.000%) positioning took 0.6 minutes writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/lh.curv.pial writing smoothed area to lh.area.pial writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/lh.area.pial vertex spacing 0.96 +- 0.46 (0.01-->10.11) (max @ vno 116343 --> 116344) face area 0.36 +- 0.32 (0.00-->7.34) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 120687 vertices processed 25000 of 120687 vertices processed 50000 of 120687 vertices processed 75000 of 120687 vertices processed 100000 of 120687 vertices processed 0 of 120687 vertices processed 25000 of 120687 vertices processed 50000 of 120687 vertices processed 75000 of 120687 vertices processed 100000 of 120687 vertices processed thickness calculation complete, 1449:2870 truncations. 24188 vertices at 0 distance 69589 vertices at 1 distance 65959 vertices at 2 distance 36536 vertices at 3 distance 17188 vertices at 4 distance 7450 vertices at 5 distance 3361 vertices at 6 distance 1498 vertices at 7 distance 732 vertices at 8 distance 425 vertices at 9 distance 225 vertices at 10 distance 136 vertices at 11 distance 84 vertices at 12 distance 67 vertices at 13 distance 51 vertices at 14 distance 45 vertices at 15 distance 35 vertices at 16 distance 38 vertices at 17 distance 26 vertices at 18 distance 14 vertices at 19 distance 29 vertices at 20 distance writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/lh.thickness positioning took 9.8 minutes #-------------------------------------------- #@# Surf Volume lh Wed Jul 27 01:23:17 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/surf mris_calc -o lh.area.mid lh.area add lh.area.pial Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.area.mid lh.area.mid div 2 Saving result to 'lh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o lh.volume lh.area.mid mul lh.thickness Saving result to 'lh.volume' (type = MRI_CURV_FILE) [ ok ] #----------------------------------------- #@# WM/GM Contrast lh Wed Jul 27 01:23:17 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts pctsurfcon --s jmcoreg --lh-only Log file is /usr/local/freesurfer/subjects/jmcoreg/scripts/pctsurfcon.log Wed Jul 27 01:23:17 EDT 2016 setenv SUBJECTS_DIR /usr/local/freesurfer/subjects cd /usr/local/freesurfer/subjects/jmcoreg/scripts /usr/local/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $ Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux FREESURFER_HOME /usr/local/freesurfer mri_vol2surf --mov /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --projdist -1 --o /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.wm.mgh --regheader jmcoreg --cortex srcvol = /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz as target reference. Loading label /usr/local/freesurfer/subjects/jmcoreg/label/lh.cortex.label Reading surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 100191 Masking with /usr/local/freesurfer/subjects/jmcoreg/label/lh.cortex.label Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.wm.mgh Dim: 120687 1 1 mri_vol2surf --mov /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz --hemi lh --noreshape --interp trilinear --o /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.gm.mgh --projfrac 0.3 --regheader jmcoreg --cortex srcvol = /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = lh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz as target reference. Loading label /usr/local/freesurfer/subjects/jmcoreg/label/lh.cortex.label Reading surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white Done reading source surface Reading thickness /usr/local/freesurfer/subjects/jmcoreg/surf/lh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 111003 Masking with /usr/local/freesurfer/subjects/jmcoreg/label/lh.cortex.label Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.gm.mgh Dim: 120687 1 1 mri_concat /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.wm.mgh /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5241/lh.gm.mgh --paired-diff-norm --mul 100 --o /usr/local/freesurfer/subjects/jmcoreg/surf/lh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/lh.w-g.pct.mgh mri_segstats --in /usr/local/freesurfer/subjects/jmcoreg/surf/lh.w-g.pct.mgh --annot jmcoreg lh aparc --sum /usr/local/freesurfer/subjects/jmcoreg/stats/lh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --in /usr/local/freesurfer/subjects/jmcoreg/surf/lh.w-g.pct.mgh --annot jmcoreg lh aparc --sum /usr/local/freesurfer/subjects/jmcoreg/stats/lh.w-g.pct.stats --snr sysname Linux hostname xubuntu-VirtualBox machine i686 user fsuser UseRobust 0 Constructing seg from annotation Reading annotation reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Seg base 1000 Loading /usr/local/freesurfer/subjects/jmcoreg/surf/lh.w-g.pct.mgh Vertex Area is 0.635095 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation 0 1000 unknown 0 0.000 1 1001 bankssts 1194 833.862 2 1002 caudalanteriorcingulate 746 460.153 3 1003 caudalmiddlefrontal 3035 1989.299 4 1004 corpuscallosum 0 0.000 5 1005 cuneus 712 439.035 6 1006 entorhinal 459 265.383 7 1007 fusiform 3844 2279.706 8 1008 inferiorparietal 6643 4196.290 9 1009 inferiortemporal 3435 2159.567 10 1010 isthmuscingulate 1751 1103.834 11 1011 lateraloccipital 6757 4288.504 12 1012 lateralorbitofrontal 3225 2093.172 13 1013 lingual 4977 2889.833 14 1014 medialorbitofrontal 3032 1882.589 15 1015 middletemporal 3361 2231.082 16 1016 parahippocampal 1211 613.873 17 1017 paracentral 3198 1921.574 18 1018 parsopercularis 2008 1317.328 19 1019 parsorbitalis 698 489.473 20 1020 parstriangularis 1985 1289.350 21 1021 pericalcarine 1118 850.332 22 1022 postcentral 5158 3198.469 23 1023 posteriorcingulate 1378 868.907 24 1024 precentral 7139 4490.778 25 1025 precuneus 5028 3279.814 26 1026 rostralanteriorcingulate 1018 637.938 27 1027 rostralmiddlefrontal 6938 4488.553 28 1028 superiorfrontal 10150 6576.878 29 1029 superiorparietal 6277 4031.693 30 1030 superiortemporal 5601 3605.308 31 1031 supramarginal 5173 3322.959 32 1032 frontalpole 233 134.095 33 1033 temporalpole 519 369.252 34 1034 transversetemporal 854 527.036 35 1035 insula 3196 2102.828 Reporting on 34 segmentations mri_segstats done Cleaning up #----------------------------------------- #@# Parcellation Stats lh Wed Jul 27 01:23:29 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.stats -b -a ../label/lh.aparc.annot -c ../label/aparc.annot.ctab jmcoreg lh white computing statistics for each annotation in ../label/lh.aparc.annot. reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz... reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white... reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.pial... reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1194 834 2281 2.992 0.620 0.096 0.019 5 0.9 bankssts 746 460 1232 3.020 0.746 0.146 0.049 13 1.5 caudalanteriorcingulate 3035 1989 5551 2.661 0.652 0.125 0.036 31 4.5 caudalmiddlefrontal 712 439 941 1.927 0.514 0.128 0.070 14 2.0 cuneus 459 265 1130 3.176 0.811 0.249 0.197 76 5.0 entorhinal 3844 2280 7504 2.860 1.087 0.264 1.528 1899 144.7 fusiform 6643 4196 10814 2.541 0.725 0.167 0.373 2091 35.3 inferiorparietal 3435 2160 9717 3.496 0.939 0.146 0.118 86 22.0 inferiortemporal 1751 1104 2578 2.605 0.944 0.243 0.798 461 17.5 isthmuscingulate 6757 4288 12845 2.739 0.859 0.178 0.129 332 33.1 lateraloccipital 3225 2093 7001 3.231 0.903 0.149 0.085 59 10.1 lateralorbitofrontal 4977 2890 6139 2.041 0.743 0.267 0.423 895 86.9 lingual 3032 1883 5476 2.579 0.848 0.146 0.431 191 25.5 medialorbitofrontal 3361 2231 8744 3.119 0.756 0.131 0.088 193 16.6 middletemporal 1211 614 1531 2.372 0.824 0.254 0.765 784 26.8 parahippocampal 3198 1922 4582 2.306 0.733 0.194 1.409 876 35.0 paracentral 2008 1317 3577 2.555 0.546 0.124 0.044 30 3.9 parsopercularis 698 489 2086 3.167 0.997 0.149 0.055 9 1.5 parsorbitalis 1985 1289 3984 2.746 0.711 0.122 0.037 19 3.2 parstriangularis 1118 850 1536 2.251 0.771 0.188 0.204 33 13.8 pericalcarine 5158 3198 7538 2.140 0.778 0.118 0.052 74 12.2 postcentral 1378 869 1975 2.545 0.703 0.168 0.220 132 10.2 posteriorcingulate 7139 4491 10562 2.242 0.704 0.123 0.048 94 15.9 precentral 5028 3280 6747 2.215 0.757 0.190 0.193 455 44.4 precuneus 1018 638 1956 2.869 0.704 0.128 0.046 14 1.7 rostralanteriorcingulate 6938 4489 12340 2.470 0.703 0.141 0.064 118 16.5 rostralmiddlefrontal 10150 6577 20365 2.799 0.669 0.134 0.114 308 57.0 superiorfrontal 6277 4032 9878 2.364 0.619 0.126 0.082 187 18.9 superiorparietal 5601 3605 11672 2.760 0.769 0.128 0.076 139 18.6 superiortemporal 5173 3323 10215 2.854 0.681 0.145 0.074 128 17.3 supramarginal 233 134 586 2.760 0.563 0.160 0.057 4 0.6 frontalpole 519 369 2871 4.166 0.808 0.158 0.066 8 1.6 temporalpole 854 527 965 1.714 0.507 0.234 0.227 94 9.0 transversetemporal 3196 2103 6801 3.092 0.984 0.187 0.234 297 33.4 insula #----------------------------------------- #@# Cortical Parc 2 lh Wed Jul 27 01:23:39 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg lh ../surf/lh.sphere.reg /usr/local/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs ../label/lh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /usr/local/freesurfer/average/lh.destrieux.simple.2009-07-29.gcs... reading color table from GCSA file.... average std = 3.9 0.2 using min determinant for regularization = 0.000 0 singular and 1066 ill-conditioned covariance matrices regularized input 1: CURVATURE FILE, flags 0, avgs 0, name sulc input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 194 labels changed using aseg relabeling using gibbs priors... 000: 7979 changed, 120687 examined... 001: 1918 changed, 30690 examined... 002: 560 changed, 9885 examined... 003: 249 changed, 3152 examined... 004: 131 changed, 1394 examined... 005: 63 changed, 693 examined... 006: 28 changed, 333 examined... 007: 17 changed, 163 examined... 008: 6 changed, 105 examined... 009: 2 changed, 43 examined... 010: 2 changed, 14 examined... 011: 2 changed, 10 examined... 012: 1 changed, 12 examined... 013: 0 changed, 5 examined... 20 labels changed using aseg 000: 260 total segments, 175 labels (1563 vertices) changed 001: 92 total segments, 7 labels (34 vertices) changed 002: 85 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 138 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 1667 vertices marked for relabeling... 1667 labels changed in reclassification. writing output to ../label/lh.aparc.a2009s.annot... classification took 0 minutes and 36 seconds. #----------------------------------------- #@# Parcellation Stats 2 lh Wed Jul 27 01:24:15 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.a2009s.stats -b -a ../label/lh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab jmcoreg lh white computing statistics for each annotation in ../label/lh.aparc.a2009s.annot. reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz... reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white... reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.pial... reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1035 666 2031 2.566 0.878 0.135 0.059 18 2.5 G_and_S_frontomargin 1618 1032 4268 3.397 0.815 0.175 0.164 70 6.9 G_and_S_occipital_inf 2331 1232 3122 2.130 0.681 0.177 0.335 164 19.9 G_and_S_paracentral 1028 656 2055 2.821 0.652 0.143 0.066 21 2.9 G_and_S_subcentral 495 304 1103 2.536 0.605 0.163 0.057 10 1.4 G_and_S_transv_frontopol 1840 1237 3341 2.669 0.648 0.137 0.063 47 4.8 G_and_S_cingul-Ant 1349 867 2531 3.107 0.779 0.155 0.069 23 3.9 G_and_S_cingul-Mid-Ant 1097 814 1772 2.539 0.585 0.183 0.224 37 15.1 G_and_S_cingul-Mid-Post 354 224 723 2.910 0.642 0.176 0.112 8 1.4 G_cingul-Post-dorsal 712 471 870 2.081 0.741 0.293 1.484 188 6.1 G_cingul-Post-ventral 648 391 905 1.964 0.478 0.131 0.060 8 1.6 G_cuneus 1248 759 2658 2.613 0.632 0.141 0.061 23 3.3 G_front_inf-Opercular 212 140 707 3.502 0.766 0.148 0.062 3 0.5 G_front_inf-Orbital 1383 867 3026 2.674 0.635 0.131 0.041 16 2.4 G_front_inf-Triangul 3846 2382 7584 2.581 0.583 0.142 0.058 61 9.3 G_front_middle 7353 4584 15386 2.790 0.695 0.150 0.621 964 54.3 G_front_sup 549 299 1261 3.034 1.011 0.188 0.289 56 5.4 G_Ins_lg_and_S_cent_ins 829 471 2030 2.982 1.196 0.259 0.486 203 21.2 G_insular_short 2496 1456 4852 2.657 0.862 0.212 0.179 536 19.0 G_occipital_middle 936 558 1500 2.183 0.671 0.148 0.172 46 3.9 G_occipital_sup 1616 917 3258 2.589 1.046 0.282 1.538 577 84.3 G_oc-temp_lat-fusifor 3957 2208 4957 2.042 0.747 0.256 0.393 664 68.7 G_oc-temp_med-Lingual 1395 782 2721 2.688 0.914 0.216 0.233 112 13.4 G_oc-temp_med-Parahip 2078 1341 5404 3.079 0.941 0.166 0.110 50 8.3 G_orbital 2664 1601 5100 2.696 0.763 0.173 0.172 182 17.6 G_pariet_inf-Angular 2991 1836 6393 2.872 0.703 0.155 0.100 106 13.9 G_pariet_inf-Supramar 2115 1283 3762 2.360 0.554 0.141 0.124 122 11.0 G_parietal_sup 1895 1079 3045 2.222 0.744 0.119 0.063 26 6.0 G_postcentral 2695 1492 4537 2.371 0.640 0.119 0.056 40 6.9 G_precentral 2586 1670 3598 2.076 0.728 0.205 0.199 206 24.6 G_precuneus 1267 757 2721 2.555 0.750 0.146 0.133 36 7.3 G_rectus 563 319 877 2.779 0.900 0.184 1.867 131 14.7 G_subcallosal 590 333 721 1.775 0.580 0.236 0.277 82 7.6 G_temp_sup-G_T_transv 2026 1301 5725 2.954 0.764 0.145 0.083 41 7.6 G_temp_sup-Lateral 606 372 1188 2.515 0.881 0.154 0.217 29 5.3 G_temp_sup-Plan_polar 888 572 2044 3.010 0.671 0.129 0.050 37 2.1 G_temp_sup-Plan_tempo 2202 1353 7596 3.673 0.944 0.167 0.167 78 20.4 G_temporal_inf 2175 1387 6273 3.152 0.762 0.147 0.124 186 15.5 G_temporal_middle 330 216 638 3.306 0.497 0.121 0.043 3 0.6 Lat_Fis-ant-Horizont 276 194 387 2.308 0.473 0.087 0.014 1 0.2 Lat_Fis-ant-Vertical 1155 852 1646 2.394 0.753 0.166 0.077 22 3.9 Lat_Fis-post 2199 1315 3089 2.168 0.727 0.198 0.163 119 15.5 Pole_occipital 1110 743 4461 3.634 1.003 0.174 0.117 55 5.8 Pole_temporal 1888 1356 2536 2.240 0.726 0.231 0.331 359 31.8 S_calcarine 2998 2109 2969 1.590 0.481 0.125 0.036 29 4.8 S_central 1214 806 1869 2.978 0.705 0.137 0.233 130 9.4 S_cingul-Marginalis 384 257 719 3.359 0.569 0.118 0.049 3 0.8 S_circular_insula_ant 1497 985 2400 2.845 0.999 0.105 0.050 24 2.8 S_circular_insula_inf 1430 1009 2446 2.940 0.611 0.128 0.069 21 3.6 S_circular_insula_sup 727 507 1456 3.067 1.144 0.114 0.032 6 1.0 S_collat_transv_ant 223 169 347 2.854 0.751 0.159 0.048 2 0.5 S_collat_transv_post 2224 1484 3330 2.477 0.645 0.137 0.050 32 4.9 S_front_inf 928 619 1518 2.172 0.737 0.140 0.057 23 2.1 S_front_middle 2915 1994 4603 2.512 0.564 0.102 0.023 17 2.7 S_front_sup 163 107 414 3.374 0.496 0.141 0.037 2 0.3 S_interm_prim-Jensen 2838 1932 4109 2.527 0.642 0.107 0.028 18 3.4 S_intrapariet_and_P_trans 725 516 1128 2.617 0.597 0.163 0.063 27 2.0 S_oc_middle_and_Lunatus 1335 961 1813 2.290 0.555 0.154 1.243 1470 2.2 S_oc_sup_and_transversal 789 530 1400 3.163 0.668 0.131 0.046 8 1.5 S_occipital_ant 500 270 843 3.821 0.866 0.123 0.094 22 2.4 S_oc-temp_lat 1608 913 1813 2.307 0.857 0.415 2.757 2222 86.8 S_oc-temp_med_and_Lingual 363 252 460 1.890 0.455 0.136 0.211 9 1.1 S_orbital_lateral 830 547 1405 2.660 1.028 0.153 0.107 25 3.7 S_orbital_med-olfact 1160 757 2380 3.506 0.994 0.124 0.048 12 2.3 S_orbital-H_Shaped 1146 777 1451 2.110 0.603 0.141 0.062 15 3.2 S_parieto_occipital 985 574 1121 2.763 0.946 0.176 0.186 112 3.0 S_pericallosal 2382 1604 3567 2.556 0.594 0.114 0.031 20 2.9 S_postcentral 1200 839 1818 2.534 0.556 0.105 0.023 7 1.1 S_precentral-inf-part 1267 907 1842 2.511 0.771 0.106 0.021 6 1.2 S_precentral-sup-part 503 352 859 2.920 0.839 0.116 0.028 4 0.5 S_suborbital 1205 745 1618 2.498 0.909 0.156 0.161 84 9.4 S_subparietal 657 447 1105 3.149 0.532 0.117 0.027 4 0.9 S_temporal_inf 4882 3321 8053 2.790 0.672 0.107 0.030 33 7.1 S_temporal_sup 347 251 461 2.108 0.601 0.144 0.041 3 0.6 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 lh Wed Jul 27 01:24:26 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_ca_label -l ../label/lh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg lh ../surf/lh.sphere.reg /usr/local/freesurfer/average/lh.DKTatlas40.gcs ../label/lh.aparc.DKTatlas40.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /usr/local/freesurfer/average/lh.DKTatlas40.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.007 0 singular and 293 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1215 labels changed using aseg relabeling using gibbs priors... 000: 2426 changed, 120687 examined... 001: 592 changed, 10260 examined... 002: 153 changed, 3204 examined... 003: 43 changed, 873 examined... 004: 26 changed, 260 examined... 005: 13 changed, 153 examined... 006: 8 changed, 81 examined... 007: 5 changed, 47 examined... 008: 4 changed, 30 examined... 009: 1 changed, 28 examined... 010: 1 changed, 7 examined... 011: 1 changed, 6 examined... 012: 0 changed, 6 examined... 210 labels changed using aseg 000: 72 total segments, 39 labels (426 vertices) changed 001: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 54 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1279 vertices marked for relabeling... 1279 labels changed in reclassification. writing output to ../label/lh.aparc.DKTatlas40.annot... classification took 0 minutes and 31 seconds. #----------------------------------------- #@# Parcellation Stats 3 lh Wed Jul 27 01:24:57 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_anatomical_stats -mgz -cortex ../label/lh.cortex.label -f ../stats/lh.aparc.DKTatlas40.stats -b -a ../label/lh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab jmcoreg lh white computing statistics for each annotation in ../label/lh.aparc.DKTatlas40.annot. reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz... reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white... reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.pial... reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/lh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/lh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1425 899 2642 3.049 0.714 0.161 0.092 51 5.9 caudalanteriorcingulate 3053 2006 5629 2.662 0.647 0.125 0.036 31 4.5 caudalmiddlefrontal 1190 738 1509 1.922 0.512 0.137 0.086 29 4.1 cuneus 453 268 1107 3.098 0.817 0.217 0.151 52 3.6 entorhinal 3657 2159 6881 2.807 1.083 0.279 1.630 1936 149.5 fusiform 6369 4010 10400 2.509 0.716 0.170 0.387 2090 35.1 inferiorparietal 3433 2139 9854 3.517 0.968 0.152 0.127 108 23.5 inferiortemporal 1806 1149 2650 2.596 0.948 0.253 0.838 474 20.9 isthmuscingulate 6848 4375 13142 2.742 0.855 0.178 0.128 334 33.2 lateraloccipital 3669 2338 8105 3.153 0.998 0.153 0.103 88 15.6 lateralorbitofrontal 4930 2858 6118 2.054 0.746 0.261 0.405 853 81.4 lingual 2310 1469 4487 2.595 0.795 0.145 0.155 62 19.6 medialorbitofrontal 4275 2855 10382 3.100 0.733 0.124 0.074 198 17.5 middletemporal 1148 563 1417 2.377 0.815 0.237 0.701 773 23.2 parahippocampal 3542 2122 5070 2.322 0.703 0.182 1.281 882 35.9 paracentral 1741 1141 3095 2.621 0.552 0.121 0.042 26 3.4 parsopercularis 815 566 2063 3.073 0.777 0.148 0.056 11 2.0 parsorbitalis 2547 1646 4873 2.619 0.675 0.130 0.066 33 5.0 parstriangularis 1132 861 1560 2.245 0.768 0.189 0.204 34 13.9 pericalcarine 5571 3484 8187 2.157 0.774 0.120 0.052 75 12.5 postcentral 1471 938 2101 2.567 0.694 0.169 0.210 134 10.4 posteriorcingulate 7190 4514 10534 2.246 0.709 0.124 0.049 95 16.4 precentral 5042 3245 6799 2.212 0.761 0.190 0.197 458 45.6 precuneus 1457 896 2538 2.804 0.772 0.134 0.633 125 3.4 rostralanteriorcingulate 4787 3139 8658 2.498 0.713 0.138 0.050 72 9.5 rostralmiddlefrontal 10902 7049 21644 2.733 0.680 0.133 0.104 294 56.4 superiorfrontal 5276 3422 8429 2.398 0.604 0.122 0.080 163 14.9 superiorparietal 7216 4718 16646 2.885 0.840 0.130 0.072 161 22.2 superiortemporal 5128 3320 10068 2.846 0.680 0.145 0.075 127 17.3 supramarginal 812 497 920 1.701 0.510 0.232 0.232 92 8.8 transversetemporal 2856 1845 6213 3.154 1.005 0.186 0.247 288 31.9 insula #-------------------------------------------- #@# Tessellate rh Wed Jul 27 01:25:07 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 9 found - 9 modified | TOTAL: 9 pass 2 (xy+): 0 found - 9 modified | TOTAL: 9 pass 1 (xy-): 10 found - 10 modified | TOTAL: 19 pass 2 (xy-): 0 found - 10 modified | TOTAL: 19 pass 1 (yz+): 4 found - 4 modified | TOTAL: 23 pass 2 (yz+): 0 found - 4 modified | TOTAL: 23 pass 1 (yz-): 3 found - 3 modified | TOTAL: 26 pass 2 (yz-): 0 found - 3 modified | TOTAL: 26 pass 1 (xz+): 5 found - 5 modified | TOTAL: 31 pass 2 (xz+): 0 found - 5 modified | TOTAL: 31 pass 1 (xz-): 2 found - 2 modified | TOTAL: 33 pass 2 (xz-): 0 found - 2 modified | TOTAL: 33 Iteration Number : 1 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 1 found - 1 modified | TOTAL: 3 pass 2 (+++): 0 found - 1 modified | TOTAL: 3 pass 1 (+++): 2 found - 2 modified | TOTAL: 5 pass 2 (+++): 0 found - 2 modified | TOTAL: 5 Iteration Number : 1 pass 1 (++): 1 found - 1 modified | TOTAL: 1 pass 2 (++): 0 found - 1 modified | TOTAL: 1 pass 1 (+-): 4 found - 4 modified | TOTAL: 5 pass 2 (+-): 0 found - 4 modified | TOTAL: 5 pass 1 (--): 2 found - 2 modified | TOTAL: 7 pass 2 (--): 1 found - 3 modified | TOTAL: 8 pass 3 (--): 0 found - 3 modified | TOTAL: 8 pass 1 (-+): 2 found - 2 modified | TOTAL: 10 pass 2 (-+): 0 found - 2 modified | TOTAL: 10 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 1 found - 1 modified | TOTAL: 1 pass 2 (xy-): 0 found - 1 modified | TOTAL: 1 pass 1 (yz+): 0 found - 0 modified | TOTAL: 1 pass 1 (yz-): 0 found - 0 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 0 found - 0 modified | TOTAL: 1 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 49 (out of 271435: 0.018052) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ slice 40: 277 vertices, 322 faces slice 50: 3444 vertices, 3635 faces slice 60: 11958 vertices, 12350 faces slice 70: 22584 vertices, 23064 faces slice 80: 34634 vertices, 35134 faces slice 90: 46465 vertices, 46997 faces slice 100: 59054 vertices, 59647 faces slice 110: 71802 vertices, 72446 faces slice 120: 84006 vertices, 84627 faces slice 130: 95815 vertices, 96447 faces slice 140: 107111 vertices, 107716 faces slice 150: 116416 vertices, 116996 faces slice 160: 125009 vertices, 125536 faces slice 170: 131795 vertices, 132319 faces slice 180: 137560 vertices, 138053 faces slice 190: 141387 vertices, 141778 faces slice 200: 142294 vertices, 142592 faces slice 210: 142294 vertices, 142592 faces slice 220: 142294 vertices, 142592 faces slice 230: 142294 vertices, 142592 faces slice 240: 142294 vertices, 142592 faces slice 250: 142294 vertices, 142592 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.000 0.000 0.000 128.000; 0.000 0.000 1.000 -128.000; 0.000 -1.000 0.000 128.000; 0.000 0.000 0.000 1.000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 142282 voxel in cpt #1: X=-300 [v=142282,e=427746,f=285164] located at (21.467901, -17.615959, -6.648191) 12 voxel in cpt #2: X=2 [v=12,e=30,f=20] located at (-4.000000, 9.500000, -14.000000) For the whole surface: X=-298 [v=142294,e=427776,f=285184] 2 components have been found keeping component #1 with 142282 vertices done #-------------------------------------------- #@# Smooth1 rh Wed Jul 27 01:25:14 EDT 2016 mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix /usr/local/freesurfer/subjects/jmcoreg/scripts setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 rh Wed Jul 27 01:25:17 EDT 2016 mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix /usr/local/freesurfer/subjects/jmcoreg/scripts avg radius = 45.6 mm, total surface area = 71644 mm^2 writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.4 minutes Not saving sulc step 000: RMS=0.125 (target=0.015) step 005: RMS=0.095 (target=0.015) step 010: RMS=0.084 (target=0.015) step 015: RMS=0.077 (target=0.015) step 020: RMS=0.074 (target=0.015) step 025: RMS=0.072 (target=0.015) step 030: RMS=0.069 (target=0.015) step 035: RMS=0.068 (target=0.015) step 040: RMS=0.068 (target=0.015) step 045: RMS=0.066 (target=0.015) step 050: RMS=0.066 (target=0.015) step 055: RMS=0.066 (target=0.015) step 060: RMS=0.066 (target=0.015) inflation complete. Not saving sulc #-------------------------------------------- #@# QSphere rh Wed Jul 27 01:25:44 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 0.98 +- 0.63 (0.00-->7.27) (max @ vno 42697 --> 43724) face area 0.03 +- 0.03 (-0.22-->0.61) scaling brain by 0.321... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.850, avgs=0 005/300: dt: 0.9000, rms radial error=176.592, avgs=0 010/300: dt: 0.9000, rms radial error=176.036, avgs=0 015/300: dt: 0.9000, rms radial error=175.307, avgs=0 020/300: dt: 0.9000, rms radial error=174.476, avgs=0 025/300: dt: 0.9000, rms radial error=173.587, avgs=0 030/300: dt: 0.9000, rms radial error=172.666, avgs=0 035/300: dt: 0.9000, rms radial error=171.727, avgs=0 040/300: dt: 0.9000, rms radial error=170.781, avgs=0 045/300: dt: 0.9000, rms radial error=169.832, avgs=0 050/300: dt: 0.9000, rms radial error=168.883, avgs=0 055/300: dt: 0.9000, rms radial error=167.937, avgs=0 060/300: dt: 0.9000, rms radial error=166.993, avgs=0 065/300: dt: 0.9000, rms radial error=166.054, avgs=0 070/300: dt: 0.9000, rms radial error=165.118, avgs=0 075/300: dt: 0.9000, rms radial error=164.188, avgs=0 080/300: dt: 0.9000, rms radial error=163.262, avgs=0 085/300: dt: 0.9000, rms radial error=162.340, avgs=0 090/300: dt: 0.9000, rms radial error=161.424, avgs=0 095/300: dt: 0.9000, rms radial error=160.512, avgs=0 100/300: dt: 0.9000, rms radial error=159.604, avgs=0 105/300: dt: 0.9000, rms radial error=158.702, avgs=0 110/300: dt: 0.9000, rms radial error=157.804, avgs=0 115/300: dt: 0.9000, rms radial error=156.912, avgs=0 120/300: dt: 0.9000, rms radial error=156.023, avgs=0 125/300: dt: 0.9000, rms radial error=155.140, avgs=0 130/300: dt: 0.9000, rms radial error=154.261, avgs=0 135/300: dt: 0.9000, rms radial error=153.387, avgs=0 140/300: dt: 0.9000, rms radial error=152.517, avgs=0 145/300: dt: 0.9000, rms radial error=151.653, avgs=0 150/300: dt: 0.9000, rms radial error=150.798, avgs=0 155/300: dt: 0.9000, rms radial error=149.948, avgs=0 160/300: dt: 0.9000, rms radial error=149.103, avgs=0 165/300: dt: 0.9000, rms radial error=148.263, avgs=0 170/300: dt: 0.9000, rms radial error=147.427, avgs=0 175/300: dt: 0.9000, rms radial error=146.595, avgs=0 180/300: dt: 0.9000, rms radial error=145.768, avgs=0 185/300: dt: 0.9000, rms radial error=144.946, avgs=0 190/300: dt: 0.9000, rms radial error=144.128, avgs=0 195/300: dt: 0.9000, rms radial error=143.315, avgs=0 200/300: dt: 0.9000, rms radial error=142.506, avgs=0 205/300: dt: 0.9000, rms radial error=141.702, avgs=0 210/300: dt: 0.9000, rms radial error=140.902, avgs=0 215/300: dt: 0.9000, rms radial error=140.107, avgs=0 220/300: dt: 0.9000, rms radial error=139.316, avgs=0 225/300: dt: 0.9000, rms radial error=138.530, avgs=0 230/300: dt: 0.9000, rms radial error=137.748, avgs=0 235/300: dt: 0.9000, rms radial error=136.970, avgs=0 240/300: dt: 0.9000, rms radial error=136.197, avgs=0 245/300: dt: 0.9000, rms radial error=135.428, avgs=0 250/300: dt: 0.9000, rms radial error=134.663, avgs=0 255/300: dt: 0.9000, rms radial error=133.903, avgs=0 260/300: dt: 0.9000, rms radial error=133.147, avgs=0 265/300: dt: 0.9000, rms radial error=132.395, avgs=0 270/300: dt: 0.9000, rms radial error=131.648, avgs=0 275/300: dt: 0.9000, rms radial error=130.905, avgs=0 280/300: dt: 0.9000, rms radial error=130.166, avgs=0 285/300: dt: 0.9000, rms radial error=129.431, avgs=0 290/300: dt: 0.9000, rms radial error=128.700, avgs=0 295/300: dt: 0.9000, rms radial error=127.974, avgs=0 300/300: dt: 0.9000, rms radial error=127.251, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 16691.55 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00012 epoch 2 (K=40.0), pass 1, starting sse = 2875.98 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00007 epoch 3 (K=160.0), pass 1, starting sse = 386.42 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.03/10 = 0.00293 epoch 4 (K=640.0), pass 1, starting sse = 70.01 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.06/11 = 0.00536 final writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.06 hours distance error %100000.00 #-------------------------------------------- #@# Fix Topology rh Wed Jul 27 01:29:11 EDT 2016 cp ../surf/rh.orig.nofix ../surf/rh.orig cp ../surf/rh.inflated.nofix ../surf/rh.inflated /usr/local/freesurfer/subjects/jmcoreg/scripts mris_fix_topology -mgz -sphere qsphere.nofix -ga -seed 1234 jmcoreg rh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ before topology correction, eno=-300 (nv=142282, nf=285164, ne=427746, g=151) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 9 iterations marking ambiguous vertices... 49720 ambiguous faces found in tessellation segmenting defects... 99 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 10 into 8 -merging segment 20 into 16 -merging segment 32 into 16 -merging segment 61 into 56 -merging segment 62 into 56 -merging segment 83 into 80 -merging segment 96 into 88 -merging segment 91 into 88 91 defects to be corrected 0 vertices coincident reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -8.1381 (-4.0691) -vertex loglikelihood: -5.7111 (-2.8555) -normal dot loglikelihood: -3.6138 (-3.6138) -quad curv loglikelihood: -5.9579 (-2.9790) Total Loglikelihood : -23.4209 CORRECTING DEFECT 0 (vertices=560, convex hull=65) After retessellation of defect 0, euler #=-85 (114388,337060,222587) : difference with theory (-88) = -3 CORRECTING DEFECT 1 (vertices=55, convex hull=78) After retessellation of defect 1, euler #=-84 (114405,337141,222652) : difference with theory (-87) = -3 CORRECTING DEFECT 2 (vertices=96, convex hull=86) After retessellation of defect 2, euler #=-83 (114449,337314,222782) : difference with theory (-86) = -3 CORRECTING DEFECT 3 (vertices=265, convex hull=42) After retessellation of defect 3, euler #=-82 (114458,337356,222816) : difference with theory (-85) = -3 CORRECTING DEFECT 4 (vertices=39, convex hull=76) After retessellation of defect 4, euler #=-81 (114472,337428,222875) : difference with theory (-84) = -3 CORRECTING DEFECT 5 (vertices=6782, convex hull=1518) After retessellation of defect 5, euler #=-83 (116165,343339,227091) : difference with theory (-83) = 0 CORRECTING DEFECT 6 (vertices=52, convex hull=84) After retessellation of defect 6, euler #=-82 (116174,343401,227145) : difference with theory (-82) = 0 CORRECTING DEFECT 7 (vertices=27, convex hull=20) After retessellation of defect 7, euler #=-81 (116179,343420,227160) : difference with theory (-81) = 0 CORRECTING DEFECT 8 (vertices=2819, convex hull=1018) After retessellation of defect 8, euler #=-82 (117141,346878,229655) : difference with theory (-80) = 2 CORRECTING DEFECT 9 (vertices=69, convex hull=84) After retessellation of defect 9, euler #=-81 (117168,346997,229748) : difference with theory (-79) = 2 CORRECTING DEFECT 10 (vertices=118, convex hull=150) After retessellation of defect 10, euler #=-80 (117219,347216,229917) : difference with theory (-78) = 2 CORRECTING DEFECT 11 (vertices=5, convex hull=23) After retessellation of defect 11, euler #=-79 (117220,347225,229926) : difference with theory (-77) = 2 CORRECTING DEFECT 12 (vertices=46, convex hull=82) After retessellation of defect 12, euler #=-78 (117237,347310,229995) : difference with theory (-76) = 2 CORRECTING DEFECT 13 (vertices=160, convex hull=92) After retessellation of defect 13, euler #=-77 (117250,347391,230064) : difference with theory (-75) = 2 CORRECTING DEFECT 14 (vertices=18, convex hull=50) After retessellation of defect 14, euler #=-76 (117257,347429,230096) : difference with theory (-74) = 2 CORRECTING DEFECT 15 (vertices=1325, convex hull=709) After retessellation of defect 15, euler #=-73 (117749,349292,231470) : difference with theory (-73) = 0 CORRECTING DEFECT 16 (vertices=208, convex hull=208) After retessellation of defect 16, euler #=-72 (117834,349653,231747) : difference with theory (-72) = 0 CORRECTING DEFECT 17 (vertices=63, convex hull=35) After retessellation of defect 17, euler #=-71 (117843,349694,231780) : difference with theory (-71) = 0 CORRECTING DEFECT 18 (vertices=77, convex hull=114) After retessellation of defect 18, euler #=-70 (117888,349883,231925) : difference with theory (-70) = 0 CORRECTING DEFECT 19 (vertices=97, convex hull=114) After retessellation of defect 19, euler #=-69 (117938,350084,232077) : difference with theory (-69) = 0 CORRECTING DEFECT 20 (vertices=86, convex hull=95) After retessellation of defect 20, euler #=-68 (117961,350191,232162) : difference with theory (-68) = 0 CORRECTING DEFECT 21 (vertices=173, convex hull=179) After retessellation of defect 21, euler #=-67 (118036,350505,232402) : difference with theory (-67) = 0 CORRECTING DEFECT 22 (vertices=569, convex hull=139) After retessellation of defect 22, euler #=-66 (118086,350720,232568) : difference with theory (-66) = 0 CORRECTING DEFECT 23 (vertices=24, convex hull=19) After retessellation of defect 23, euler #=-65 (118087,350730,232578) : difference with theory (-65) = 0 CORRECTING DEFECT 24 (vertices=54, convex hull=20) After retessellation of defect 24, euler #=-64 (118090,350742,232588) : difference with theory (-64) = 0 CORRECTING DEFECT 25 (vertices=36, convex hull=25) After retessellation of defect 25, euler #=-63 (118091,350757,232603) : difference with theory (-63) = 0 CORRECTING DEFECT 26 (vertices=40, convex hull=37) After retessellation of defect 26, euler #=-62 (118096,350787,232629) : difference with theory (-62) = 0 CORRECTING DEFECT 27 (vertices=718, convex hull=372) After retessellation of defect 27, euler #=-61 (118303,351588,233224) : difference with theory (-61) = 0 CORRECTING DEFECT 28 (vertices=66, convex hull=17) After retessellation of defect 28, euler #=-60 (118306,351601,233235) : difference with theory (-60) = 0 CORRECTING DEFECT 29 (vertices=7, convex hull=29) After retessellation of defect 29, euler #=-59 (118307,351611,233245) : difference with theory (-59) = 0 CORRECTING DEFECT 30 (vertices=182, convex hull=154) After retessellation of defect 30, euler #=-58 (118383,351913,233472) : difference with theory (-58) = 0 CORRECTING DEFECT 31 (vertices=1212, convex hull=815) After retessellation of defect 31, euler #=-58 (118870,353817,234889) : difference with theory (-57) = 1 CORRECTING DEFECT 32 (vertices=41, convex hull=85) After retessellation of defect 32, euler #=-57 (118884,353894,234953) : difference with theory (-56) = 1 CORRECTING DEFECT 33 (vertices=6, convex hull=19) After retessellation of defect 33, euler #=-56 (118884,353898,234958) : difference with theory (-55) = 1 CORRECTING DEFECT 34 (vertices=20, convex hull=54) After retessellation of defect 34, euler #=-55 (118895,353949,234999) : difference with theory (-54) = 1 CORRECTING DEFECT 35 (vertices=243, convex hull=68) After retessellation of defect 35, euler #=-54 (118916,354039,235069) : difference with theory (-53) = 1 CORRECTING DEFECT 36 (vertices=989, convex hull=317) After retessellation of defect 36, euler #=-53 (119220,355112,235839) : difference with theory (-52) = 1 CORRECTING DEFECT 37 (vertices=38, convex hull=70) After retessellation of defect 37, euler #=-52 (119230,355172,235890) : difference with theory (-51) = 1 CORRECTING DEFECT 38 (vertices=87, convex hull=127) After retessellation of defect 38, euler #=-51 (119265,355338,236022) : difference with theory (-50) = 1 CORRECTING DEFECT 39 (vertices=37, convex hull=72) After retessellation of defect 39, euler #=-50 (119293,355450,236107) : difference with theory (-49) = 1 CORRECTING DEFECT 40 (vertices=48, convex hull=80) After retessellation of defect 40, euler #=-49 (119316,355556,236191) : difference with theory (-48) = 1 CORRECTING DEFECT 41 (vertices=38, convex hull=73) After retessellation of defect 41, euler #=-48 (119342,355663,236273) : difference with theory (-47) = 1 CORRECTING DEFECT 42 (vertices=56, convex hull=41) After retessellation of defect 42, euler #=-48 (119351,355712,236313) : difference with theory (-46) = 2 CORRECTING DEFECT 43 (vertices=59, convex hull=82) After retessellation of defect 43, euler #=-47 (119380,355834,236407) : difference with theory (-45) = 2 CORRECTING DEFECT 44 (vertices=42, convex hull=57) After retessellation of defect 44, euler #=-46 (119389,355884,236449) : difference with theory (-44) = 2 CORRECTING DEFECT 45 (vertices=125, convex hull=99) After retessellation of defect 45, euler #=-45 (119419,356019,236555) : difference with theory (-43) = 2 CORRECTING DEFECT 46 (vertices=5, convex hull=14) After retessellation of defect 46, euler #=-44 (119420,356025,236561) : difference with theory (-42) = 2 CORRECTING DEFECT 47 (vertices=28, convex hull=64) After retessellation of defect 47, euler #=-43 (119429,356078,236606) : difference with theory (-41) = 2 CORRECTING DEFECT 48 (vertices=74, convex hull=74) After retessellation of defect 48, euler #=-42 (119459,356199,236698) : difference with theory (-40) = 2 CORRECTING DEFECT 49 (vertices=22, convex hull=24) After retessellation of defect 49, euler #=-41 (119462,356217,236714) : difference with theory (-39) = 2 CORRECTING DEFECT 50 (vertices=55, convex hull=28) After retessellation of defect 50, euler #=-40 (119466,356237,236731) : difference with theory (-38) = 2 CORRECTING DEFECT 51 (vertices=58, convex hull=80) After retessellation of defect 51, euler #=-39 (119489,356337,236809) : difference with theory (-37) = 2 CORRECTING DEFECT 52 (vertices=1405, convex hull=427) After retessellation of defect 52, euler #=-38 (119643,357001,237320) : difference with theory (-36) = 2 CORRECTING DEFECT 53 (vertices=38, convex hull=68) After retessellation of defect 53, euler #=-35 (119652,357057,237370) : difference with theory (-35) = 0 CORRECTING DEFECT 54 (vertices=1696, convex hull=991) After retessellation of defect 54, euler #=-37 (120277,359472,239158) : difference with theory (-34) = 3 CORRECTING DEFECT 55 (vertices=15, convex hull=30) After retessellation of defect 55, euler #=-36 (120279,359486,239171) : difference with theory (-33) = 3 CORRECTING DEFECT 56 (vertices=48, convex hull=90) After retessellation of defect 56, euler #=-35 (120305,359601,239261) : difference with theory (-32) = 3 CORRECTING DEFECT 57 (vertices=12, convex hull=14) After retessellation of defect 57, euler #=-34 (120306,359609,239269) : difference with theory (-31) = 3 CORRECTING DEFECT 58 (vertices=53, convex hull=32) After retessellation of defect 58, euler #=-33 (120313,359640,239294) : difference with theory (-30) = 3 CORRECTING DEFECT 59 (vertices=48, convex hull=66) After retessellation of defect 59, euler #=-32 (120335,359735,239368) : difference with theory (-29) = 3 CORRECTING DEFECT 60 (vertices=20, convex hull=42) After retessellation of defect 60, euler #=-31 (120344,359777,239402) : difference with theory (-28) = 3 CORRECTING DEFECT 61 (vertices=54, convex hull=52) After retessellation of defect 61, euler #=-30 (120355,359836,239451) : difference with theory (-27) = 3 CORRECTING DEFECT 62 (vertices=14, convex hull=35) After retessellation of defect 62, euler #=-29 (120357,359852,239466) : difference with theory (-26) = 3 CORRECTING DEFECT 63 (vertices=144, convex hull=49) After retessellation of defect 63, euler #=-28 (120376,359931,239527) : difference with theory (-25) = 3 CORRECTING DEFECT 64 (vertices=138, convex hull=69) After retessellation of defect 64, euler #=-27 (120396,360020,239597) : difference with theory (-24) = 3 CORRECTING DEFECT 65 (vertices=32, convex hull=61) After retessellation of defect 65, euler #=-26 (120405,360072,239641) : difference with theory (-23) = 3 CORRECTING DEFECT 66 (vertices=450, convex hull=100) After retessellation of defect 66, euler #=-25 (120461,360290,239804) : difference with theory (-22) = 3 CORRECTING DEFECT 67 (vertices=23, convex hull=51) After retessellation of defect 67, euler #=-24 (120463,360314,239827) : difference with theory (-21) = 3 CORRECTING DEFECT 68 (vertices=67, convex hull=45) After retessellation of defect 68, euler #=-23 (120475,360367,239869) : difference with theory (-20) = 3 CORRECTING DEFECT 69 (vertices=234, convex hull=56) After retessellation of defect 69, euler #=-22 (120485,360418,239911) : difference with theory (-19) = 3 CORRECTING DEFECT 70 (vertices=25, convex hull=35) After retessellation of defect 70, euler #=-21 (120489,360440,239930) : difference with theory (-18) = 3 CORRECTING DEFECT 71 (vertices=88, convex hull=48) After retessellation of defect 71, euler #=-20 (120504,360504,239980) : difference with theory (-17) = 3 CORRECTING DEFECT 72 (vertices=23, convex hull=35) After retessellation of defect 72, euler #=-19 (120511,360538,240008) : difference with theory (-16) = 3 CORRECTING DEFECT 73 (vertices=431, convex hull=201) After retessellation of defect 73, euler #=-18 (120565,360806,240223) : difference with theory (-15) = 3 CORRECTING DEFECT 74 (vertices=8, convex hull=24) After retessellation of defect 74, euler #=-17 (120566,360816,240233) : difference with theory (-14) = 3 CORRECTING DEFECT 75 (vertices=468, convex hull=251) After retessellation of defect 75, euler #=-15 (120715,361387,240657) : difference with theory (-13) = 2 CORRECTING DEFECT 76 (vertices=26, convex hull=75) After retessellation of defect 76, euler #=-14 (120731,361464,240719) : difference with theory (-12) = 2 CORRECTING DEFECT 77 (vertices=23, convex hull=51) After retessellation of defect 77, euler #=-13 (120742,361516,240761) : difference with theory (-11) = 2 CORRECTING DEFECT 78 (vertices=403, convex hull=83) After retessellation of defect 78, euler #=-12 (120759,361605,240834) : difference with theory (-10) = 2 CORRECTING DEFECT 79 (vertices=90, convex hull=41) After retessellation of defect 79, euler #=-11 (120781,361686,240894) : difference with theory (-9) = 2 CORRECTING DEFECT 80 (vertices=128, convex hull=90) After retessellation of defect 80, euler #=-10 (120822,361844,241012) : difference with theory (-8) = 2 CORRECTING DEFECT 81 (vertices=954, convex hull=185) After retessellation of defect 81, euler #=-9 (120885,362118,241224) : difference with theory (-7) = 2 CORRECTING DEFECT 82 (vertices=1863, convex hull=525) After retessellation of defect 82, euler #=-6 (121290,363622,242326) : difference with theory (-6) = 0 CORRECTING DEFECT 83 (vertices=112, convex hull=119) After retessellation of defect 83, euler #=-5 (121333,363801,242463) : difference with theory (-5) = 0 CORRECTING DEFECT 84 (vertices=170, convex hull=49) After retessellation of defect 84, euler #=-4 (121353,363876,242519) : difference with theory (-4) = 0 CORRECTING DEFECT 85 (vertices=54, convex hull=64) After retessellation of defect 85, euler #=-3 (121362,363932,242567) : difference with theory (-3) = 0 CORRECTING DEFECT 86 (vertices=59, convex hull=87) After retessellation of defect 86, euler #=-2 (121392,364055,242661) : difference with theory (-2) = 0 CORRECTING DEFECT 87 (vertices=43, convex hull=38) After retessellation of defect 87, euler #=-1 (121397,364085,242687) : difference with theory (-1) = 0 CORRECTING DEFECT 88 (vertices=213, convex hull=97) After retessellation of defect 88, euler #=0 (121424,364213,242789) : difference with theory (0) = 0 CORRECTING DEFECT 89 (vertices=50, convex hull=37) After retessellation of defect 89, euler #=1 (121429,364242,242814) : difference with theory (1) = 0 CORRECTING DEFECT 90 (vertices=57, convex hull=91) After retessellation of defect 90, euler #=2 (121444,364326,242884) : difference with theory (2) = 0 computing original vertex metric properties... storing new metric properties... computing tessellation statistics... vertex spacing 0.90 +- 0.30 (0.01-->15.22) (max @ vno 33137 --> 119963) face area 0.00 +- 0.00 (0.00-->0.00) performing soap bubble on retessellated vertices for 0 iterations... vertex spacing 0.90 +- 0.30 (0.01-->15.22) (max @ vno 33137 --> 119963) face area 0.00 +- 0.00 (0.00-->0.00) tessellation finished, orienting corrected surface... 308 mutations (34.9%), 574 crossovers (65.1%), 717 vertices were eliminated building final representation... 20838 vertices and 0 faces have been removed from triangulation after topology correction, eno=2 (nv=121444, nf=242884, ne=364326, g=0) writing corrected surface to /usr/local/freesurfer/subjects/jmcoreg/surf/rh.orig... 0.000 % of the vertices (0 vertices) exhibit an orientation change topology fixing took 69.4 minutes 0 defective edges removing intersecting faces 000: 2434 intersecting 001: 182 intersecting 002: 58 intersecting 003: 2 intersecting mris_euler_number ../surf/rh.orig euler # = v-e+f = 2g-2: 121444 - 364326 + 242884 = 2 --> 0 holes F =2V-4: 242884 = 242888-4 (0) 2E=3F: 728652 = 728652 (0) total defect index = 0 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_remove_intersection ../surf/rh.orig ../surf/rh.orig intersection removal took 0.00 hours removing intersecting faces 000: 1252 intersecting 001: 143 intersecting 002: 50 intersecting writing corrected surface to ../surf/rh.orig rm ../surf/rh.inflated #-------------------------------------------- #@# Make White Surf rh Wed Jul 27 02:38:38 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_make_surfaces -noaparc -whiteonly -mgz -T1 brain.finalsurfs jmcoreg rh only generating white matter surface not using aparc to prevent surfaces crossing the midline INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/filled.mgz... reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/brain.finalsurfs.mgz... reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz... 9807 bright wm thresholded. 11886 bright non-wm voxels segmented. reading original surface position from /usr/local/freesurfer/subjects/jmcoreg/surf/rh.orig... computing class statistics... border white: 261039 voxels (1.56%) border gray 319152 voxels (1.90%) WM (96.0): 96.2 +- 6.5 [70.0 --> 110.0] GM (86.0) : 84.7 +- 11.4 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.6 (was 70) setting MAX_BORDER_WHITE to 107.5 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 60.2 (was 40) setting MAX_GRAY to 94.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.3 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 48.8 (was 40) repositioning cortical surface to gray/white boundary reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.82 +- 0.25 (0.01-->8.51) (max @ vno 119789 --> 120205) face area 0.28 +- 0.14 (0.00-->9.91) mean absolute distance = 0.85 +- 1.17 4220 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=101, GM=83 mean inside = 94.9, mean outside = 85.0 smoothing surface for 5 iterations... inhibiting deformation at non-cortical midline structures... removing 4 vertex label from ripped group mean border=89.7, 556 (556) missing vertices, mean dist -0.0 [1.0 (%44.4)->0.7 (%55.6))] %52 local maxima, %41 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=xubun, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.29 (0.05-->8.90) (max @ vno 119789 --> 120205) face area 0.28 +- 0.16 (0.00-->9.34) mean absolute distance = 0.50 +- 0.90 4215 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3564624.5, rms=7.61 001: dt: 0.5000, sse=4255195.0, rms=6.114 (0.000%) 002: dt: 0.5000, sse=4272018.0, rms=5.060 (0.000%) 003: dt: 0.5000, sse=4250143.5, rms=4.331 (0.000%) 004: dt: 0.5000, sse=4138907.5, rms=3.796 (0.000%) 005: dt: 0.5000, sse=4075945.2, rms=3.456 (0.000%) 006: dt: 0.5000, sse=4014460.8, rms=3.263 (0.000%) 007: dt: 0.5000, sse=3988263.0, rms=3.121 (0.000%) 008: dt: 0.5000, sse=3980112.8, rms=3.038 (0.000%) 009: dt: 0.5000, sse=3969586.8, rms=2.928 (0.000%) 010: dt: 0.5000, sse=3951777.5, rms=2.832 (0.000%) 011: dt: 0.5000, sse=3965322.0, rms=2.745 (0.000%) 012: dt: 0.5000, sse=3951308.8, rms=2.676 (0.000%) 013: dt: 0.5000, sse=3944107.5, rms=2.614 (0.000%) rms = 2.58, time step reduction 1 of 3 to 0.250... 014: dt: 0.5000, sse=3944838.8, rms=2.580 (0.000%) 015: dt: 0.2500, sse=3070126.5, rms=2.369 (0.000%) 016: dt: 0.2500, sse=2970717.5, rms=2.311 (0.000%) rms = 2.28, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=2945111.5, rms=2.284 (0.000%) 018: dt: 0.1250, sse=2916221.5, rms=2.214 (0.000%) rms = 2.18, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=2885402.0, rms=2.180 (0.000%) positioning took 1.5 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 3 vertex label from ripped group removing 3 vertex label from ripped group removing 2 vertex label from ripped group removing 1 vertex label from ripped group mean border=91.0, 608 (279) missing vertices, mean dist -0.2 [0.6 (%59.2)->0.3 (%40.8))] %61 local maxima, %31 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=xubun, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.88 +- 0.29 (0.04-->9.12) (max @ vno 119789 --> 120205) face area 0.32 +- 0.19 (0.00-->12.50) mean absolute distance = 0.40 +- 0.64 3409 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3098625.5, rms=3.33 020: dt: 0.5000, sse=3364343.0, rms=2.613 (0.000%) 021: dt: 0.5000, sse=3527086.5, rms=2.419 (0.000%) 022: dt: 0.5000, sse=3532191.8, rms=2.324 (0.000%) rms = 2.29, time step reduction 1 of 3 to 0.250... 023: dt: 0.5000, sse=3609642.5, rms=2.294 (0.000%) 024: dt: 0.2500, sse=3252498.0, rms=2.188 (0.000%) 025: dt: 0.2500, sse=3182493.5, rms=2.136 (0.000%) rms = 2.13, time step reduction 2 of 3 to 0.125... 026: dt: 0.2500, sse=3163070.5, rms=2.129 (0.000%) rms = 2.08, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=3137988.8, rms=2.080 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 1 vertex label from ripped group removing 3 vertex label from ripped group removing 2 vertex label from ripped group mean border=92.2, 653 (205) missing vertices, mean dist -0.2 [0.5 (%59.8)->0.3 (%40.2))] %72 local maxima, %20 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=xubun, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.88 +- 0.29 (0.04-->9.02) (max @ vno 119789 --> 120205) face area 0.32 +- 0.19 (0.00-->12.84) mean absolute distance = 0.35 +- 0.49 3193 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3214049.8, rms=2.81 028: dt: 0.5000, sse=3475603.0, rms=2.327 (0.000%) 029: dt: 0.5000, sse=3610160.5, rms=2.089 (0.000%) rms = 2.17, time step reduction 1 of 3 to 0.250... 030: dt: 0.2500, sse=3414149.2, rms=2.003 (0.000%) rms = 1.96, time step reduction 2 of 3 to 0.125... 031: dt: 0.2500, sse=3364269.5, rms=1.962 (0.000%) 032: dt: 0.1250, sse=3308422.8, rms=1.888 (0.000%) rms = 1.85, time step reduction 3 of 3 to 0.062... 033: dt: 0.1250, sse=3285882.5, rms=1.853 (0.000%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group removing 1 vertex label from ripped group removing 3 vertex label from ripped group mean border=92.8, 703 (168) missing vertices, mean dist -0.1 [0.4 (%54.3)->0.3 (%45.7))] %78 local maxima, %14 large gradients and % 1 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=xubun, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing white matter surface to /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white... writing smoothed curvature to rh.curv 000: dt: 0.0000, sse=3308208.8, rms=2.17 034: dt: 0.5000, sse=3933859.2, rms=2.019 (0.000%) 035: dt: 0.5000, sse=3737889.2, rms=1.913 (0.000%) rms = 2.00, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=3650457.0, rms=1.798 (0.000%) rms = 1.83, time step reduction 2 of 3 to 0.125... rms = 1.78, time step reduction 3 of 3 to 0.062... 037: dt: 0.1250, sse=3636957.5, rms=1.776 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group generating cortex label... 14 non-cortical segments detected only using segment with 1849 vertices erasing segment 0 (vno[0] = 40043) erasing segment 2 (vno[0] = 47405) erasing segment 3 (vno[0] = 70289) erasing segment 4 (vno[0] = 74854) erasing segment 5 (vno[0] = 80751) erasing segment 6 (vno[0] = 82636) erasing segment 7 (vno[0] = 82653) erasing segment 8 (vno[0] = 86017) erasing segment 9 (vno[0] = 88279) erasing segment 10 (vno[0] = 89760) erasing segment 11 (vno[0] = 89771) erasing segment 12 (vno[0] = 89783) erasing segment 13 (vno[0] = 92720) writing cortex label to /usr/local/freesurfer/subjects/jmcoreg/label/rh.cortex.label... writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/rh.curv writing smoothed area to rh.area writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/rh.area vertex spacing 0.88 +- 0.29 (0.05-->9.06) (max @ vno 119789 --> 120205) face area 0.32 +- 0.19 (0.00-->12.70) refinement took 4.6 minutes #-------------------------------------------- #@# Smooth2 rh Wed Jul 27 02:43:12 EDT 2016 mris_smooth -n 3 -nw -seed 1234 ../surf/rh.white ../surf/rh.smoothwm /usr/local/freesurfer/subjects/jmcoreg/scripts smoothing for 3 iterations setting seed for random number generator to 1234 smoothing surface tessellation for 3 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation2 rh Wed Jul 27 02:43:15 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_inflate ../surf/rh.smoothwm ../surf/rh.inflated avg radius = 44.8 mm, total surface area = 70667 mm^2 writing inflated surface to ../surf/rh.inflated writing sulcal depths to ../surf/rh.sulc step 000: RMS=0.119 (target=0.015) step 005: RMS=0.086 (target=0.015) step 010: RMS=0.068 (target=0.015) step 015: RMS=0.057 (target=0.015) step 020: RMS=0.049 (target=0.015) step 025: RMS=0.042 (target=0.015) step 030: RMS=0.038 (target=0.015) step 035: RMS=0.034 (target=0.015) step 040: RMS=0.029 (target=0.015) step 045: RMS=0.027 (target=0.015) step 050: RMS=0.025 (target=0.015) step 055: RMS=0.024 (target=0.015) step 060: RMS=0.022 (target=0.015) inflation complete. inflation took 0.4 minutes mris_curvature -thresh .999 -n -a 5 -w -distances 10 10 ../surf/rh.inflated normalizing curvature values. averaging curvature patterns 5 times. sampling 10 neighbors out to a distance of 10 mm 149 vertices thresholded to be in k1 ~ [-0.92 1.11], k2 ~ [-0.20 0.44] total integrated curvature = 0.411*4pi (5.159) --> 1 handles ICI = 1.2, FI = 7.8, variation=134.359 130 vertices thresholded to be in [-0.15 0.03] writing Gaussian curvature to ../surf/rh.inflated.K...thresholding curvature at 99.90% level curvature mean = 0.000, std = 0.003 112 vertices thresholded to be in [-0.27 0.45] done. writing mean curvature to ../surf/rh.inflated.H...curvature mean = -0.016, std = 0.024 done. #----------------------------------------- #@# Curvature Stats rh Wed Jul 27 02:44:59 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/surf mris_curvature_stats -m --writeCurvatureFiles -G -o ../stats/rh.curv.stats -F smoothwm jmcoreg rh curv sulc Toggling save flag on curvature files [ ok ] Outputting results using filestem [ ../stats/rh.curv.stats ] Toggling save flag on curvature files [ ok ] Setting surface [ jmcoreg/rh.smoothwm ] Reading surface... [ ok ] Setting texture [ curv ] Reading texture... [ ok ] Setting texture [ sulc ] Reading texture...Gb_filter = 0 [ ok ] Calculating Discrete Principal Curvatures... Determining geometric order for vertex faces... [####################] [ ok ] Determining KH curvatures... [####################] [ ok ] Determining k1k2 curvatures... [####################] [ ok ] deltaViolations [ 262 ] Gb_filter = 0 WARN: S lookup min: -0.368694 WARN: S explicit min: 0.000000 vertex = 46 #-------------------------------------------- #@# Sphere rh Wed Jul 27 02:45:02 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_sphere -seed 1234 ../surf/rh.inflated ../surf/rh.sphere setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... scaling brain by 0.325... MRISunfold() max_passes = 1 ------- tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=2, l_area=1.000, l_dist=1.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 1.000000 desired_rms_height -1.000000 momentum 0.900000 nbhd_size 7 max_nbrs 8 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 1234 -------------------- mrisRemoveNegativeArea() pass 1: epoch 1 of 3 starting distance error %18.45 pass 1: epoch 2 of 3 starting distance error %18.40 unfolding complete - removing small folds... starting distance error %18.18 removing remaining folds... final distance error %18.22 MRISunfold() return, current seed 1234 writing spherical brain to ../surf/rh.sphere spherical transformation took 0.72 hours #-------------------------------------------- #@# Surf Reg rh Wed Jul 27 03:28:25 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_register -curv ../surf/rh.sphere /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif ../surf/rh.sphere.reg using smoothwm curvature for final alignment $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading surface from ../surf/rh.sphere... reading template parameterization from /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif... MRISregister() ------- max_passes = 4 min_degrees = 0.500000 max_degrees = 64.000000 nangles = 8 tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height -1.000000 momentum 0.950000 nbhd_size -10 max_nbrs 10 niterations 25 nsurfaces 0 SURFACES 3 flags 16 (10) use curv 16 no sulc 0 no rigid align 0 mris->nsize 1 mris->hemisphere 1 randomSeed 0 tol=5.0e-01, sigma=0.0, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=1.000, l_dist=5.000 using quadratic fit line minimization -------------------- 1 Reading rh.sulc curvature mean = -0.000, std = 0.601 curvature mean = 0.039, std = 0.926 curvature mean = 0.026, std = 0.880 Starting MRISrigidBodyAlignGlobal() d=64.00 min @ (0.00, 0.00, 16.00) sse = 340714.1, tmin=0.7047 d=32.00 min @ (0.00, -8.00, -8.00) sse = 249845.4, tmin=1.4128 d=16.00 min @ (4.00, 4.00, 4.00) sse = 215688.8, tmin=2.1268 d=8.00 min @ (0.00, -2.00, 0.00) sse = 212304.7, tmin=2.8964 d=4.00 min @ (0.00, 1.00, -1.00) sse = 209932.3, tmin=3.6804 d=1.00 min @ (0.00, -0.25, 0.00) sse = 209826.3, tmin=5.2528 d=0.50 min @ (0.00, 0.00, 0.12) sse = 209824.3, tmin=6.0188 tol=1.0e+00, sigma=0.5, host=xubun, nav=1024, nbrs=1, l_extern=10000.000, l_parea=0.200, l_nlarea=1.000, l_corr=0.050, l_spring=0.500, l_dist=5.000 using quadratic fit line minimization MRISrigidBodyAlignGlobal() done 6.02 min curvature mean = 0.014, std = 0.956 curvature mean = 0.009, std = 0.953 curvature mean = 0.013, std = 0.969 curvature mean = 0.004, std = 0.979 curvature mean = 0.010, std = 0.971 curvature mean = 0.001, std = 0.991 2 Reading smoothwm curvature mean = -0.043, std = 0.331 curvature mean = 0.005, std = 0.070 curvature mean = 0.067, std = 0.330 curvature mean = 0.004, std = 0.084 curvature mean = 0.044, std = 0.478 curvature mean = 0.004, std = 0.090 curvature mean = 0.025, std = 0.603 curvature mean = 0.003, std = 0.093 curvature mean = 0.010, std = 0.716 MRISregister() return, current seed 0 writing registered surface to ../surf/rh.sphere.reg... expanding nbhd size to 1 #-------------------------------------------- #@# Jacobian white rh Wed Jul 27 03:49:00 EDT 2016 mris_jacobian ../surf/rh.white ../surf/rh.sphere.reg ../surf/rh.jacobian_white reading surface from ../surf/rh.white... writing curvature file ../surf/rh.jacobian_white #-------------------------------------------- #@# AvgCurv rh Wed Jul 27 03:49:01 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mrisp_paint -a 5 /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif#6 ../surf/rh.sphere.reg ../surf/rh.avg_curv averaging curvature patterns 5 times... reading surface from ../surf/rh.sphere.reg... reading template parameterization from /usr/local/freesurfer/average/rh.average.curvature.filled.buckner40.tif... writing curvature file to ../surf/rh.avg_curv... #----------------------------------------- #@# Cortical Parc rh Wed Jul 27 03:49:03 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg rh ../surf/rh.sphere.reg /usr/local/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs ../label/rh.aparc.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /usr/local/freesurfer/average/rh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs... reading color table from GCSA file.... average std = 0.7 using min determinant for regularization = 0.006 0 singular and 311 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1057 labels changed using aseg relabeling using gibbs priors... 000: 2619 changed, 121444 examined... 001: 600 changed, 11177 examined... 002: 134 changed, 3320 examined... 003: 48 changed, 836 examined... 004: 18 changed, 302 examined... 005: 9 changed, 100 examined... 006: 2 changed, 45 examined... 007: 0 changed, 10 examined... 224 labels changed using aseg 000: 111 total segments, 70 labels (495 vertices) changed 001: 44 total segments, 3 labels (29 vertices) changed 002: 41 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 26 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 1672 vertices marked for relabeling... 1672 labels changed in reclassification. writing output to ../label/rh.aparc.annot... classification took 0 minutes and 32 seconds. #-------------------------------------------- #@# Make Pial Surf rh Wed Jul 27 03:49:34 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_make_surfaces -white NOWRITE -mgz -T1 brain.finalsurfs jmcoreg rh -white NOWRITE indicates that white, curv, area, and cortex.label files will not be written... INFO: assuming MGZ format for volumes. using brain.finalsurfs as T1 volume... $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/filled.mgz... reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/brain.finalsurfs.mgz... reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz... 9807 bright wm thresholded. 11886 bright non-wm voxels segmented. reading original surface position from /usr/local/freesurfer/subjects/jmcoreg/surf/rh.orig... computing class statistics... border white: 261039 voxels (1.56%) border gray 319152 voxels (1.90%) WM (96.0): 96.2 +- 6.5 [70.0 --> 110.0] GM (86.0) : 84.7 +- 11.4 [30.0 --> 110.0] setting MIN_GRAY_AT_WHITE_BORDER to 71.6 (was 70) setting MAX_BORDER_WHITE to 107.5 (was 105) setting MIN_BORDER_WHITE to 83.0 (was 85) setting MAX_CSF to 60.2 (was 40) setting MAX_GRAY to 94.5 (was 95) setting MAX_GRAY_AT_CSF_BORDER to 77.3 (was 75) setting MIN_GRAY_AT_CSF_BORDER to 48.8 (was 40) smoothing contralateral hemisphere... using class modes intead of means, discounting robust sigmas.... intensity peaks found at WM=101, GM=83 mean inside = 94.9, mean outside = 85.0 smoothing surface for 5 iterations... reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) repositioning cortical surface to gray/white boundary reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/aseg.mgz... smoothing T1 volume with sigma = 2.000 vertex spacing 0.82 +- 0.25 (0.01-->8.51) (max @ vno 119789 --> 120205) face area 0.28 +- 0.14 (0.00-->9.91) mean absolute distance = 0.85 +- 1.17 4258 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... inhibiting deformation at non-cortical midline structures... deleting segment 5 with 17 points - only 0.00% unknown deleting segment 6 with 186 points - only 0.00% unknown deleting segment 9 with 53 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 11 with 7 points - only 0.00% unknown deleting segment 13 with 12 points - only 0.00% unknown mean border=89.7, 562 (558) missing vertices, mean dist -0.0 [1.0 (%44.5)->0.7 (%55.5))] %52 local maxima, %41 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=2.0, host=xubun, nav=4, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 complete_dist_mat 0 rms 0 smooth_averages 0 remove_neg 0 ico_order 0 which_surface 0 target_radius 0.000000 nfields 0 scale 0.000000 desired_rms_height 0.000000 momentum 0.000000 nbhd_size 0 max_nbrs 0 niterations 25 nsurfaces 0 SURFACES 3 flags 0 (0) use curv 0 no sulc 0 no rigid align 0 mris->nsize 2 mris->hemisphere 1 randomSeed 0 smoothing T1 volume with sigma = 1.000 vertex spacing 0.88 +- 0.29 (0.05-->9.02) (max @ vno 119789 --> 120205) face area 0.28 +- 0.16 (0.00-->9.93) mean absolute distance = 0.50 +- 0.91 4247 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3573586.5, rms=7.60 001: dt: 0.5000, sse=4265061.0, rms=6.110 (0.000%) 002: dt: 0.5000, sse=4281485.5, rms=5.056 (0.000%) 003: dt: 0.5000, sse=4258997.0, rms=4.328 (0.000%) 004: dt: 0.5000, sse=4147799.2, rms=3.794 (0.000%) 005: dt: 0.5000, sse=4085062.8, rms=3.454 (0.000%) 006: dt: 0.5000, sse=4025959.0, rms=3.267 (0.000%) 007: dt: 0.5000, sse=3997206.5, rms=3.116 (0.000%) 008: dt: 0.5000, sse=3991874.8, rms=3.047 (0.000%) 009: dt: 0.5000, sse=3978115.5, rms=2.931 (0.000%) 010: dt: 0.5000, sse=3964979.8, rms=2.834 (0.000%) 011: dt: 0.5000, sse=3977142.2, rms=2.744 (0.000%) 012: dt: 0.5000, sse=3966340.2, rms=2.674 (0.000%) 013: dt: 0.5000, sse=3953830.5, rms=2.611 (0.000%) rms = 2.58, time step reduction 1 of 3 to 0.250... 014: dt: 0.5000, sse=3959692.8, rms=2.577 (0.000%) 015: dt: 0.2500, sse=3079698.5, rms=2.366 (0.000%) 016: dt: 0.2500, sse=2979400.8, rms=2.309 (0.000%) rms = 2.28, time step reduction 2 of 3 to 0.125... 017: dt: 0.2500, sse=2954398.8, rms=2.284 (0.000%) 018: dt: 0.1250, sse=2926116.8, rms=2.212 (0.000%) rms = 2.18, time step reduction 3 of 3 to 0.062... 019: dt: 0.1250, sse=2894357.5, rms=2.178 (0.000%) positioning took 1.5 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group deleting segment 3 with 12 points - only 0.00% unknown deleting segment 4 with 183 points - only 0.00% unknown deleting segment 6 with 7 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 10 with 55 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 12 with 43 points - only 11.63% unknown deleting segment 13 with 8 points - only 0.00% unknown deleting segment 14 with 23 points - only 43.48% unknown deleting segment 15 with 11 points - only 0.00% unknown removing 1 vertex label from ripped group deleting segment 16 with 1 points - only 0.00% unknown deleting segment 17 with 15 points - only 0.00% unknown mean border=91.0, 627 (276) missing vertices, mean dist -0.2 [0.6 (%59.2)->0.3 (%40.8))] %62 local maxima, %31 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=1.0, host=xubun, nav=2, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 vertex spacing 0.88 +- 0.29 (0.04-->9.16) (max @ vno 119789 --> 120205) face area 0.32 +- 0.19 (0.00-->12.03) mean absolute distance = 0.40 +- 0.64 3453 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3115338.5, rms=3.32 020: dt: 0.5000, sse=3377624.2, rms=2.609 (0.000%) 021: dt: 0.5000, sse=3541501.0, rms=2.417 (0.000%) 022: dt: 0.5000, sse=3549728.2, rms=2.322 (0.000%) rms = 2.29, time step reduction 1 of 3 to 0.250... 023: dt: 0.5000, sse=3623076.8, rms=2.289 (0.000%) 024: dt: 0.2500, sse=3268107.5, rms=2.184 (0.000%) 025: dt: 0.2500, sse=3201241.5, rms=2.132 (0.000%) rms = 2.13, time step reduction 2 of 3 to 0.125... 026: dt: 0.2500, sse=3178899.8, rms=2.125 (0.000%) rms = 2.08, time step reduction 3 of 3 to 0.062... 027: dt: 0.1250, sse=3153339.0, rms=2.076 (0.000%) positioning took 0.6 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group deleting segment 1 with 17 points - only 0.00% unknown deleting segment 2 with 181 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 5 with 58 points - only 0.00% unknown removing 2 vertex label from ripped group deleting segment 7 with 43 points - only 11.63% unknown deleting segment 8 with 9 points - only 0.00% unknown deleting segment 9 with 14 points - only 21.43% unknown removing 1 vertex label from ripped group deleting segment 10 with 1 points - only 0.00% unknown deleting segment 11 with 11 points - only 0.00% unknown deleting segment 12 with 12 points - only 0.00% unknown removing 4 vertex label from ripped group deleting segment 13 with 4 points - only 0.00% unknown mean border=92.2, 672 (205) missing vertices, mean dist -0.2 [0.5 (%59.8)->0.3 (%40.2))] %72 local maxima, %20 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.5, host=xubun, nav=1, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 vertex spacing 0.88 +- 0.29 (0.04-->9.20) (max @ vno 119789 --> 120205) face area 0.32 +- 0.19 (0.00-->11.81) mean absolute distance = 0.35 +- 0.49 3237 vertices more than 2 sigmas from mean. averaging target values for 5 iterations... 000: dt: 0.0000, sse=3231986.5, rms=2.81 028: dt: 0.5000, sse=3496317.2, rms=2.316 (0.000%) 029: dt: 0.5000, sse=3632108.2, rms=2.084 (0.000%) rms = 2.16, time step reduction 1 of 3 to 0.250... 030: dt: 0.2500, sse=3435311.5, rms=2.000 (0.000%) rms = 1.96, time step reduction 2 of 3 to 0.125... 031: dt: 0.2500, sse=3386916.5, rms=1.959 (0.000%) 032: dt: 0.1250, sse=3330248.0, rms=1.886 (0.000%) rms = 1.85, time step reduction 3 of 3 to 0.062... 033: dt: 0.1250, sse=3310142.0, rms=1.851 (0.000%) positioning took 0.5 minutes inhibiting deformation at non-cortical midline structures... removing 3 vertex label from ripped group deleting segment 1 with 25 points - only 0.00% unknown deleting segment 2 with 172 points - only 0.00% unknown deleting segment 3 with 8 points - only 0.00% unknown removing 3 vertex label from ripped group deleting segment 6 with 62 points - only 0.00% unknown deleting segment 7 with 43 points - only 11.63% unknown deleting segment 8 with 9 points - only 0.00% unknown deleting segment 9 with 9 points - only 11.11% unknown removing 1 vertex label from ripped group deleting segment 10 with 1 points - only 0.00% unknown deleting segment 11 with 11 points - only 0.00% unknown deleting segment 12 with 15 points - only 0.00% unknown mean border=92.8, 717 (166) missing vertices, mean dist -0.1 [0.4 (%54.3)->0.3 (%45.7))] %79 local maxima, %14 large gradients and % 0 min vals, 0 gradients ignored tol=1.0e-04, sigma=0.2, host=xubun, nav=0, nbrs=2, l_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 repositioning cortical surface to gray/csf boundary. smoothing T1 volume with sigma = 2.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=3332058.8, rms=2.16 034: dt: 0.5000, sse=3960840.8, rms=2.001 (0.000%) 035: dt: 0.5000, sse=3760956.5, rms=1.911 (0.000%) rms = 1.99, time step reduction 1 of 3 to 0.250... 036: dt: 0.2500, sse=3675288.0, rms=1.801 (0.000%) rms = 1.82, time step reduction 2 of 3 to 0.125... rms = 1.78, time step reduction 3 of 3 to 0.062... 037: dt: 0.1250, sse=3660832.0, rms=1.778 (0.000%) positioning took 0.4 minutes inhibiting deformation at non-cortical midline structures... removing 2 vertex label from ripped group smoothing surface for 5 iterations... mean border=71.6, 700 (700) missing vertices, mean dist 1.7 [1.3 (%0.1)->2.9 (%99.9))] %29 local maxima, %26 large gradients and %38 min vals, 2351 gradients ignored tol=1.0e-04, sigma=2.0, host=xubun, nav=16, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 1.000 averaging target values for 5 iterations... 000: dt: 0.0000, sse=13467877.0, rms=22.40 001: dt: 0.5000, sse=11422644.0, rms=20.234 (0.000%) 002: dt: 0.5000, sse=9735209.0, rms=18.251 (0.000%) 003: dt: 0.5000, sse=8375654.0, rms=16.453 (0.000%) 004: dt: 0.5000, sse=7429051.5, rms=14.832 (0.000%) 005: dt: 0.5000, sse=6748139.0, rms=13.382 (0.000%) 006: dt: 0.5000, sse=6346193.5, rms=12.098 (0.000%) 007: dt: 0.5000, sse=6057248.5, rms=10.907 (0.000%) 008: dt: 0.5000, sse=5955699.0, rms=9.833 (0.000%) 009: dt: 0.5000, sse=5896868.5, rms=8.854 (0.000%) 010: dt: 0.5000, sse=5989283.0, rms=8.032 (0.000%) 011: dt: 0.5000, sse=6013816.0, rms=7.333 (0.000%) 012: dt: 0.5000, sse=6189706.0, rms=6.785 (0.000%) 013: dt: 0.5000, sse=6291936.0, rms=6.350 (0.000%) 014: dt: 0.5000, sse=6407896.5, rms=6.015 (0.000%) 015: dt: 0.5000, sse=6459961.0, rms=5.739 (0.000%) 016: dt: 0.5000, sse=6532799.0, rms=5.507 (0.000%) 017: dt: 0.5000, sse=6513723.5, rms=5.334 (0.000%) 018: dt: 0.5000, sse=6564580.5, rms=5.187 (0.000%) 019: dt: 0.5000, sse=6567544.0, rms=5.091 (0.000%) 020: dt: 0.5000, sse=6600712.5, rms=5.010 (0.000%) rms = 4.97, time step reduction 1 of 3 to 0.250... 021: dt: 0.5000, sse=6586358.0, rms=4.973 (0.000%) 022: dt: 0.2500, sse=5005092.0, rms=4.472 (0.000%) 023: dt: 0.2500, sse=4871144.5, rms=4.357 (0.000%) rms = 4.35, time step reduction 2 of 3 to 0.125... 024: dt: 0.2500, sse=4793072.5, rms=4.346 (0.000%) 025: dt: 0.1250, sse=4524267.0, rms=4.173 (0.000%) rms = 4.13, time step reduction 3 of 3 to 0.062... 026: dt: 0.1250, sse=4469119.0, rms=4.134 (0.000%) positioning took 2.0 minutes mean border=68.6, 3438 (193) missing vertices, mean dist 0.3 [0.3 (%28.9)->0.8 (%71.1))] %41 local maxima, %20 large gradients and %30 min vals, 1564 gradients ignored tol=1.0e-04, sigma=1.0, host=xubun, nav=8, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.500 averaging target values for 5 iterations... 000: dt: 0.0000, sse=5160310.5, rms=6.34 027: dt: 0.5000, sse=5171659.0, rms=5.542 (0.000%) 028: dt: 0.5000, sse=6245754.0, rms=5.292 (0.000%) rms = 5.35, time step reduction 1 of 3 to 0.250... 029: dt: 0.2500, sse=5440178.5, rms=4.777 (0.000%) 030: dt: 0.2500, sse=5097922.0, rms=4.658 (0.000%) rms = 4.69, time step reduction 2 of 3 to 0.125... 031: dt: 0.1250, sse=4998364.5, rms=4.582 (0.000%) 032: dt: 0.1250, sse=4865887.0, rms=4.492 (0.000%) rms = 4.46, time step reduction 3 of 3 to 0.062... 033: dt: 0.1250, sse=4842837.5, rms=4.456 (0.000%) positioning took 0.7 minutes mean border=67.5, 4689 (166) missing vertices, mean dist 0.2 [0.3 (%31.2)->0.5 (%68.8))] %46 local maxima, %15 large gradients and %29 min vals, 1495 gradients ignored tol=1.0e-04, sigma=0.5, host=xubun, nav=4, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 smoothing T1 volume with sigma = 0.250 averaging target values for 5 iterations... 000: dt: 0.0000, sse=4930359.5, rms=4.84 rms = 5.24, time step reduction 1 of 3 to 0.250... 034: dt: 0.2500, sse=4793714.0, rms=4.603 (0.000%) rms = 4.55, time step reduction 2 of 3 to 0.125... 035: dt: 0.2500, sse=4878499.5, rms=4.554 (0.000%) 036: dt: 0.1250, sse=4792314.5, rms=4.464 (0.000%) rms = 4.42, time step reduction 3 of 3 to 0.062... 037: dt: 0.1250, sse=4864588.5, rms=4.422 (0.000%) positioning took 0.4 minutes mean border=66.8, 8300 (155) missing vertices, mean dist 0.1 [0.3 (%37.5)->0.4 (%62.5))] %49 local maxima, %11 large gradients and %27 min vals, 1425 gradients ignored tol=1.0e-04, sigma=0.2, host=xubun, nav=2, nbrs=2, l_surf_repulse=5.000, l_tspring=1.000, l_nspring=0.500, l_intensity=0.200, l_curv=1.000 mom=0.00, dt=0.50 writing pial surface to /usr/local/freesurfer/subjects/jmcoreg/surf/rh.pial... writing smoothed curvature to rh.curv.pial 000: dt: 0.0000, sse=4886884.0, rms=4.53 rms = 4.80, time step reduction 1 of 3 to 0.250... 038: dt: 0.2500, sse=4881120.0, rms=4.396 (0.000%) 039: dt: 0.2500, sse=5239119.5, rms=4.313 (0.000%) rms = 4.34, time step reduction 2 of 3 to 0.125... 040: dt: 0.1250, sse=5175228.5, rms=4.256 (0.000%) 041: dt: 0.1250, sse=5157703.0, rms=4.180 (0.000%) 042: dt: 0.1250, sse=5215984.0, rms=4.112 (0.000%) rms = 4.06, time step reduction 3 of 3 to 0.062... 043: dt: 0.1250, sse=5285892.5, rms=4.062 (0.000%) positioning took 0.6 minutes writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/rh.curv.pial writing smoothed area to rh.area.pial writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/rh.area.pial vertex spacing 0.97 +- 0.46 (0.07-->7.64) (max @ vno 73478 --> 72450) face area 0.37 +- 0.32 (0.00-->7.72) measuring cortical thickness... writing cortical thickness estimate to 'thickness' file. 0 of 121444 vertices processed 25000 of 121444 vertices processed 50000 of 121444 vertices processed 75000 of 121444 vertices processed 100000 of 121444 vertices processed 0 of 121444 vertices processed 25000 of 121444 vertices processed 50000 of 121444 vertices processed 75000 of 121444 vertices processed 100000 of 121444 vertices processed thickness calculation complete, 1370:2001 truncations. 23347 vertices at 0 distance 69357 vertices at 1 distance 67935 vertices at 2 distance 37149 vertices at 3 distance 16561 vertices at 4 distance 6959 vertices at 5 distance 3197 vertices at 6 distance 1434 vertices at 7 distance 707 vertices at 8 distance 376 vertices at 9 distance 209 vertices at 10 distance 146 vertices at 11 distance 67 vertices at 12 distance 69 vertices at 13 distance 52 vertices at 14 distance 51 vertices at 15 distance 57 vertices at 16 distance 33 vertices at 17 distance 43 vertices at 18 distance 43 vertices at 19 distance 58 vertices at 20 distance writing curvature file /usr/local/freesurfer/subjects/jmcoreg/surf/rh.thickness positioning took 9.2 minutes #-------------------------------------------- #@# Surf Volume rh Wed Jul 27 03:58:47 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/surf mris_calc -o rh.area.mid rh.area add rh.area.pial Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.area.mid rh.area.mid div 2 Saving result to 'rh.area.mid' (type = MRI_CURV_FILE) [ ok ] mris_calc -o rh.volume rh.area.mid mul rh.thickness Saving result to 'rh.volume' (type = MRI_CURV_FILE) [ ok ] #----------------------------------------- #@# WM/GM Contrast rh Wed Jul 27 03:58:47 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts pctsurfcon --s jmcoreg --rh-only Log file is /usr/local/freesurfer/subjects/jmcoreg/scripts/pctsurfcon.log Wed Jul 27 03:58:47 EDT 2016 setenv SUBJECTS_DIR /usr/local/freesurfer/subjects cd /usr/local/freesurfer/subjects/jmcoreg/scripts /usr/local/freesurfer/bin/pctsurfcon $Id: pctsurfcon,v 1.11.2.1 2011/11/10 20:37:10 nicks Exp $ Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux FREESURFER_HOME /usr/local/freesurfer mri_vol2surf --mov /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --projdist -1 --o /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.wm.mgh --regheader jmcoreg --cortex srcvol = /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjDist = -1 reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz as target reference. Loading label /usr/local/freesurfer/subjects/jmcoreg/label/rh.cortex.label Reading surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white Done reading source surface Mapping Source Volume onto Source Subject Surface 1 -1 -1 -1 using old Done mapping volume to surface Number of source voxels hit = 100644 Masking with /usr/local/freesurfer/subjects/jmcoreg/label/rh.cortex.label Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.wm.mgh Dim: 121444 1 1 mri_vol2surf --mov /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz --hemi rh --noreshape --interp trilinear --o /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.gm.mgh --projfrac 0.3 --regheader jmcoreg --cortex srcvol = /usr/local/freesurfer/subjects/jmcoreg/mri/rawavg.mgz srcreg unspecified srcregold = 0 srcwarp unspecified surf = white hemi = rh ProjFrac = 0.3 thickness = thickness reshape = 0 interp = trilinear float2int = round GetProjMax = 0 INFO: float2int code = 0 INFO: changing type to float Done loading volume Computing registration from header. Using /usr/local/freesurfer/subjects/jmcoreg/mri/orig.mgz as target reference. Loading label /usr/local/freesurfer/subjects/jmcoreg/label/rh.cortex.label Reading surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white Done reading source surface Reading thickness /usr/local/freesurfer/subjects/jmcoreg/surf/rh.thickness Done Mapping Source Volume onto Source Subject Surface 1 0.3 0.3 0.3 using old Done mapping volume to surface Number of source voxels hit = 112590 Masking with /usr/local/freesurfer/subjects/jmcoreg/label/rh.cortex.label Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.gm.mgh Dim: 121444 1 1 mri_concat /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.wm.mgh /usr/local/freesurfer/subjects/jmcoreg/surf/tmp.pctsurfcon.5778/rh.gm.mgh --paired-diff-norm --mul 100 --o /usr/local/freesurfer/subjects/jmcoreg/surf/rh.w-g.pct.mgh ninputs = 2 Checking inputs nframestot = 2 Allocing output Done allocing Combining pairs nframes = 1 Multiplying by 100.000000 Writing to /usr/local/freesurfer/subjects/jmcoreg/surf/rh.w-g.pct.mgh mri_segstats --in /usr/local/freesurfer/subjects/jmcoreg/surf/rh.w-g.pct.mgh --annot jmcoreg rh aparc --sum /usr/local/freesurfer/subjects/jmcoreg/stats/rh.w-g.pct.stats --snr $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $ cwd cmdline mri_segstats --in /usr/local/freesurfer/subjects/jmcoreg/surf/rh.w-g.pct.mgh --annot jmcoreg rh aparc --sum /usr/local/freesurfer/subjects/jmcoreg/stats/rh.w-g.pct.stats --snr sysname Linux hostname xubuntu-VirtualBox machine i686 user fsuser UseRobust 0 Constructing seg from annotation Reading annotation reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Seg base 2000 Loading /usr/local/freesurfer/subjects/jmcoreg/surf/rh.w-g.pct.mgh Vertex Area is 0.637973 mm^3 Generating list of segmentation ids Found 36 segmentations Computing statistics for each segmentation 0 2000 unknown 0 0.000 1 2001 bankssts 1242 856.228 2 2002 caudalanteriorcingulate 956 584.589 3 2003 caudalmiddlefrontal 2865 1880.388 4 2004 corpuscallosum 0 0.000 5 2005 cuneus 1550 940.109 6 2006 entorhinal 386 251.896 7 2007 fusiform 3285 2203.494 8 2008 inferiorparietal 8321 5412.353 9 2009 inferiortemporal 3536 2241.070 10 2010 isthmuscingulate 1034 519.260 11 2011 lateraloccipital 5942 3660.308 12 2012 lateralorbitofrontal 3213 2147.422 13 2013 lingual 3567 2534.294 14 2014 medialorbitofrontal 2494 1564.271 15 2015 middletemporal 4043 2623.962 16 2016 parahippocampal 957 537.838 17 2017 paracentral 2870 1754.739 18 2018 parsopercularis 1823 1118.291 19 2019 parsorbitalis 989 626.447 20 2020 parstriangularis 2095 1297.465 21 2021 pericalcarine 1135 806.571 22 2022 postcentral 5537 3406.069 23 2023 posteriorcingulate 979 620.367 24 2024 precentral 7341 4539.927 25 2025 precuneus 4774 2965.838 26 2026 rostralanteriorcingulate 927 619.841 27 2027 rostralmiddlefrontal 7414 4762.159 28 2028 superiorfrontal 9664 6302.312 29 2029 superiorparietal 7248 4651.077 30 2030 superiortemporal 5632 3568.021 31 2031 supramarginal 4485 2944.416 32 2032 frontalpole 330 205.787 33 2033 temporalpole 457 312.722 34 2034 transversetemporal 498 294.336 35 2035 insula 3742 2327.231 Reporting on 34 segmentations mri_segstats done Cleaning up #----------------------------------------- #@# Parcellation Stats rh Wed Jul 27 03:58:59 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.stats -b -a ../label/rh.aparc.annot -c ../label/aparc.annot.ctab jmcoreg rh white computing statistics for each annotation in ../label/rh.aparc.annot. reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz... reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white... reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.pial... reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/terrier_001/users/nicks/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 1242 856 2121 2.851 0.658 0.106 0.026 8 1.3 bankssts 956 585 1609 2.708 0.742 0.138 0.044 14 1.7 caudalanteriorcingulate 2865 1880 5047 2.695 0.513 0.132 0.046 41 5.7 caudalmiddlefrontal 1550 940 1776 1.946 0.509 0.184 0.156 64 8.0 cuneus 386 252 1068 3.219 1.166 0.173 0.084 11 1.4 entorhinal 3285 2203 7323 2.978 0.880 0.150 0.081 58 12.7 fusiform 8321 5412 15598 2.646 0.791 0.157 0.111 300 39.1 inferiorparietal 3536 2241 8826 3.320 0.868 0.147 0.072 70 10.4 inferiortemporal 1034 519 1306 2.429 0.911 0.196 0.449 166 14.7 isthmuscingulate 5942 3660 11464 2.808 0.907 0.174 0.132 285 29.1 lateraloccipital 3213 2147 7052 3.094 0.796 0.141 0.074 63 8.1 lateralorbitofrontal 3567 2534 5333 2.225 0.769 0.291 0.957 1382 55.9 lingual 2494 1564 4302 2.451 0.769 0.171 0.830 479 18.5 medialorbitofrontal 4043 2624 9634 3.048 0.883 0.142 0.092 125 18.6 middletemporal 957 538 1322 2.153 0.780 0.125 0.207 125 4.8 parahippocampal 2870 1755 4414 2.365 0.706 0.141 0.081 83 11.0 paracentral 1823 1118 3459 2.814 0.713 0.136 0.075 43 5.9 parsopercularis 989 626 2755 3.299 0.864 0.148 0.093 19 3.6 parsorbitalis 2095 1297 3853 2.759 0.680 0.125 0.133 131 4.8 parstriangularis 1135 807 1217 1.732 0.629 0.222 0.135 111 5.5 pericalcarine 5537 3406 7592 2.063 0.646 0.106 0.056 90 9.9 postcentral 979 620 1545 2.776 0.709 0.141 0.044 13 1.8 posteriorcingulate 7341 4540 12656 2.630 0.605 0.120 0.069 119 25.1 precentral 4774 2966 7583 2.619 0.711 0.140 0.086 130 17.2 precuneus 927 620 1537 2.506 0.803 0.182 0.084 49 3.7 rostralanteriorcingulate 7414 4762 12834 2.422 0.747 0.139 0.051 102 15.8 rostralmiddlefrontal 9664 6302 19242 2.784 0.659 0.142 0.183 573 28.9 superiorfrontal 7248 4651 10823 2.258 0.610 0.127 0.063 108 21.7 superiorparietal 5632 3568 10895 2.648 0.783 0.140 0.112 233 29.2 superiortemporal 4485 2944 8354 2.635 0.714 0.139 0.063 71 12.0 supramarginal 330 206 888 2.954 0.632 0.192 0.094 8 1.4 frontalpole 457 313 1824 3.458 0.893 0.171 0.103 20 1.6 temporalpole 498 294 557 1.801 0.430 0.154 0.093 14 1.9 transversetemporal 3742 2327 6451 2.827 0.885 0.192 0.589 467 139.3 insula #----------------------------------------- #@# Cortical Parc 2 rh Wed Jul 27 03:59:09 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg rh ../surf/rh.sphere.reg /usr/local/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs ../label/rh.aparc.a2009s.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /usr/local/freesurfer/average/rh.destrieux.simple.2009-07-29.gcs... reading color table from GCSA file.... average std = 1.9 0.2 using min determinant for regularization = 0.000 0 singular and 851 ill-conditioned covariance matrices regularized input 1: CURVATURE FILE, flags 0, avgs 0, name sulc input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 286 labels changed using aseg relabeling using gibbs priors... 000: 8303 changed, 121444 examined... 001: 1949 changed, 31707 examined... 002: 582 changed, 9987 examined... 003: 266 changed, 3228 examined... 004: 145 changed, 1532 examined... 005: 77 changed, 799 examined... 006: 42 changed, 436 examined... 007: 25 changed, 240 examined... 008: 11 changed, 144 examined... 009: 2 changed, 62 examined... 010: 1 changed, 10 examined... 011: 1 changed, 6 examined... 012: 0 changed, 11 examined... 62 labels changed using aseg 000: 277 total segments, 195 labels (2033 vertices) changed 001: 98 total segments, 16 labels (83 vertices) changed 002: 82 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 103 changed) rationalizing unknown annotations with cortex label relabeling Medial_wall label... 1367 vertices marked for relabeling... 1367 labels changed in reclassification. writing output to ../label/rh.aparc.a2009s.annot... classification took 0 minutes and 36 seconds. #----------------------------------------- #@# Parcellation Stats 2 rh Wed Jul 27 03:59:45 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.a2009s.stats -b -a ../label/rh.aparc.a2009s.annot -c ../label/aparc.annot.a2009s.ctab jmcoreg rh white computing statistics for each annotation in ../label/rh.aparc.a2009s.annot. reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz... reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white... reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.pial... reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 76 entries read (originally /autofs/space/birn_044/users/christophe_atlas_rebuild//scripts_2008/Simple_surface_labels2009.txt) Saving annotation colortable ../label/aparc.annot.a2009s.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 878 565 1520 2.274 0.801 0.145 0.050 12 2.1 G_and_S_frontomargin 1341 856 2149 2.518 0.763 0.177 0.209 145 6.8 G_and_S_occipital_inf 1546 916 2257 2.127 0.499 0.139 0.067 39 5.2 G_and_S_paracentral 1194 735 2123 2.633 0.707 0.138 0.095 48 6.0 G_and_S_subcentral 783 497 1761 2.842 0.807 0.156 0.060 14 2.0 G_and_S_transv_frontopol 2591 1748 4296 2.727 0.831 0.175 0.383 293 16.7 G_and_S_cingul-Ant 1301 859 2478 3.088 0.593 0.136 0.049 14 2.6 G_and_S_cingul-Mid-Ant 1410 966 2219 2.373 0.658 0.157 0.101 35 5.2 G_and_S_cingul-Mid-Post 173 96 293 2.637 0.509 0.152 0.068 4 0.5 G_cingul-Post-dorsal 585 258 675 2.326 0.859 0.263 0.723 155 13.3 G_cingul-Post-ventral 1232 715 1342 1.809 0.422 0.163 0.116 44 4.9 G_cuneus 1150 672 2305 2.704 0.834 0.162 0.109 43 5.7 G_front_inf-Opercular 228 156 588 3.010 0.943 0.167 0.060 3 0.5 G_front_inf-Orbital 1091 592 2338 2.930 0.690 0.144 0.235 90 3.8 G_front_inf-Triangul 3382 2109 6845 2.560 0.657 0.149 0.067 67 9.5 G_front_middle 6762 4094 14276 2.763 0.638 0.147 0.397 750 27.4 G_front_sup 782 429 1193 2.466 0.852 0.258 2.185 293 117.9 G_Ins_lg_and_S_cent_ins 677 392 1762 3.354 1.022 0.173 0.186 54 3.5 G_insular_short 2425 1428 5007 2.664 0.878 0.202 0.190 150 18.2 G_occipital_middle 1662 967 3274 2.442 0.814 0.134 0.118 44 11.0 G_occipital_sup 1224 799 3017 2.752 0.851 0.158 0.066 21 3.4 G_oc-temp_lat-fusifor 2616 1783 3908 2.199 0.787 0.294 0.732 891 44.5 G_oc-temp_med-Lingual 1643 942 3230 2.721 1.081 0.186 0.271 185 19.6 G_oc-temp_med-Parahip 2329 1485 6568 3.133 0.861 0.154 0.105 66 8.3 G_orbital 3028 1882 6450 2.581 0.819 0.173 0.149 104 18.9 G_pariet_inf-Angular 2395 1465 5126 2.702 0.755 0.146 0.076 45 8.0 G_pariet_inf-Supramar 2089 1276 3431 2.254 0.493 0.135 0.062 32 5.4 G_parietal_sup 2095 1162 3150 2.084 0.536 0.113 0.099 62 5.4 G_postcentral 2906 1544 5759 2.772 0.513 0.111 0.089 43 13.3 G_precentral 2316 1261 3986 2.583 0.604 0.150 0.110 78 10.2 G_precuneus 667 424 1640 2.583 0.820 0.157 0.056 13 1.5 G_rectus 431 271 449 1.842 0.694 0.235 0.233 42 2.7 G_subcallosal 378 217 443 1.709 0.374 0.155 0.084 8 1.3 G_temp_sup-G_T_transv 2205 1317 5111 2.794 0.747 0.139 0.098 99 10.8 G_temp_sup-Lateral 433 285 724 2.270 0.744 0.149 0.109 18 1.7 G_temp_sup-Plan_polar 909 561 1954 2.902 0.699 0.148 0.093 19 3.1 G_temp_sup-Plan_tempo 2368 1448 6454 3.298 0.936 0.172 0.102 67 10.4 G_temporal_inf 2231 1416 6041 3.102 0.872 0.159 0.134 66 15.4 G_temporal_middle 401 254 589 2.516 0.476 0.100 0.040 41 0.9 Lat_Fis-ant-Horizont 159 114 307 2.911 0.402 0.168 0.099 3 0.6 Lat_Fis-ant-Vertical 1247 882 1972 2.936 0.634 0.140 0.057 15 3.3 Lat_Fis-post 2678 1554 4979 2.809 0.999 0.179 0.146 103 17.5 Pole_occipital 1294 832 4422 3.355 0.998 0.173 0.105 81 5.5 Pole_temporal 1420 1014 1632 2.031 0.881 0.209 0.148 116 9.2 S_calcarine 2888 2037 3600 1.988 0.663 0.111 0.032 21 4.1 S_central 1260 886 2091 2.758 0.699 0.113 0.029 10 1.3 S_cingul-Marginalis 578 397 1125 3.739 0.554 0.134 0.041 5 1.0 S_circular_insula_ant 1429 961 1959 2.323 0.660 0.156 0.124 100 8.1 S_circular_insula_inf 1140 787 1934 3.089 0.499 0.114 0.035 7 1.6 S_circular_insula_sup 676 463 1313 3.584 0.750 0.112 0.033 5 0.9 S_collat_transv_ant 165 127 296 3.048 0.495 0.129 0.034 1 0.2 S_collat_transv_post 2180 1447 3308 2.567 0.620 0.127 0.041 21 3.7 S_front_inf 1648 1053 2663 2.226 0.620 0.128 0.044 21 3.0 S_front_middle 2494 1687 3597 2.430 0.590 0.119 0.037 19 3.2 S_front_sup 402 302 562 2.560 0.545 0.146 0.047 4 0.7 S_interm_prim-Jensen 2926 1988 3743 2.171 0.622 0.122 0.050 47 6.9 S_intrapariet_and_P_trans 809 563 1366 2.846 0.711 0.136 0.051 9 1.6 S_oc_middle_and_Lunatus 1774 1303 2922 2.835 0.754 0.142 0.050 44 3.6 S_oc_sup_and_transversal 588 386 780 2.272 0.447 0.174 0.163 20 4.4 S_occipital_ant 611 446 1128 3.349 0.903 0.110 0.022 3 0.6 S_oc-temp_lat 1278 978 2120 2.415 0.680 0.192 1.102 479 5.8 S_oc-temp_med_and_Lingual 506 338 727 2.397 0.790 0.122 0.032 3 0.7 S_orbital_lateral 581 435 957 2.726 0.773 0.142 0.072 7 1.9 S_orbital_med-olfact 1238 833 2478 3.036 0.719 0.120 0.044 11 2.5 S_orbital-H_Shaped 1776 1180 2378 2.439 0.720 0.153 0.115 57 7.7 S_parieto_occipital 862 478 898 2.324 0.814 0.154 0.108 31 3.6 S_pericallosal 1959 1354 2486 2.151 0.485 0.090 0.019 9 1.6 S_postcentral 1491 1033 2432 2.787 0.562 0.112 0.030 10 1.8 S_precentral-inf-part 1558 1064 2217 2.558 0.550 0.112 0.027 10 1.8 S_precentral-sup-part 180 86 272 2.870 0.781 0.144 0.055 3 0.4 S_suborbital 1019 663 1591 2.727 0.823 0.128 0.046 13 1.7 S_subparietal 876 594 1480 3.043 0.750 0.127 0.035 7 1.3 S_temporal_inf 5358 3703 9241 2.834 0.721 0.111 0.034 64 7.9 S_temporal_sup 426 272 550 2.311 0.621 0.175 0.127 20 2.9 S_temporal_transverse #----------------------------------------- #@# Cortical Parc 3 rh Wed Jul 27 03:59:56 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_ca_label -l ../label/rh.cortex.label -aseg ../mri/aseg.mgz -seed 1234 jmcoreg rh ../surf/rh.sphere.reg /usr/local/freesurfer/average/rh.DKTatlas40.gcs ../label/rh.aparc.DKTatlas40.annot setting seed for random number generator to 1234 using ../mri/aseg.mgz aseg volume to correct midline $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $ $Id: mrisurf.c,v 1.693.2.7 2013/05/12 22:28:01 nicks Exp $ reading atlas from /usr/local/freesurfer/average/rh.DKTatlas40.gcs... reading color table from GCSA file.... average std = 0.9 using min determinant for regularization = 0.008 0 singular and 237 ill-conditioned covariance matrices regularized input 0: MEAN CURVATURE, flags 0, avgs 5, name mean_curvature labeling surface... 1648 labels changed using aseg relabeling using gibbs priors... 000: 2486 changed, 121444 examined... 001: 621 changed, 10762 examined... 002: 173 changed, 3363 examined... 003: 50 changed, 970 examined... 004: 27 changed, 284 examined... 005: 15 changed, 141 examined... 006: 5 changed, 70 examined... 007: 6 changed, 35 examined... 008: 5 changed, 38 examined... 009: 2 changed, 33 examined... 010: 1 changed, 15 examined... 011: 3 changed, 9 examined... 012: 0 changed, 10 examined... 224 labels changed using aseg 000: 83 total segments, 50 labels (501 vertices) changed 001: 34 total segments, 1 labels (1 vertices) changed 002: 33 total segments, 0 labels (0 vertices) changed 10 filter iterations complete (10 requested, 33 changed) rationalizing unknown annotations with cortex label relabeling unknown label... relabeling corpuscallosum label... 868 vertices marked for relabeling... 868 labels changed in reclassification. writing output to ../label/rh.aparc.DKTatlas40.annot... classification took 0 minutes and 32 seconds. #----------------------------------------- #@# Parcellation Stats 3 rh Wed Jul 27 04:00:27 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/scripts mris_anatomical_stats -mgz -cortex ../label/rh.cortex.label -f ../stats/rh.aparc.DKTatlas40.stats -b -a ../label/rh.aparc.DKTatlas40.annot -c ../label/aparc.annot.DKTatlas40.ctab jmcoreg rh white computing statistics for each annotation in ../label/rh.aparc.DKTatlas40.annot. reading volume /usr/local/freesurfer/subjects/jmcoreg/mri/wm.mgz... reading input surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white... reading input pial surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.pial... reading input white surface /usr/local/freesurfer/subjects/jmcoreg/surf/rh.white... INFO: assuming MGZ format for volumes. INFO: using ../label/rh.cortex.label as mask to calc cortex NumVert, SurfArea and MeanThickness. reading colortable from annotation file... colortable with 36 entries read (originally /Applications/freesurfer/average/colortable_desikan_killiany.txt) Saving annotation colortable ../label/aparc.annot.DKTatlas40.ctab table columns are: number of vertices total surface area (mm^2) total gray matter volume (mm^3) average cortical thickness +- standard deviation (mm) integrated rectified mean curvature integrated rectified Gaussian curvature folding index intrinsic curvature index structure name 999 612 1711 2.738 0.745 0.139 0.046 14 1.9 caudalanteriorcingulate 2946 1944 5209 2.717 0.505 0.132 0.046 42 5.8 caudalmiddlefrontal 1885 1160 2142 1.946 0.483 0.176 0.136 68 8.6 cuneus 458 296 1265 3.353 1.190 0.173 0.080 13 1.6 entorhinal 2924 1960 6475 2.941 0.873 0.150 0.083 53 11.4 fusiform 8090 5271 15194 2.652 0.792 0.158 0.111 296 38.1 inferiorparietal 3804 2423 9473 3.306 0.863 0.148 0.072 74 11.5 inferiortemporal 1077 536 1345 2.452 0.933 0.186 0.427 159 14.6 isthmuscingulate 6111 3775 11761 2.799 0.906 0.172 0.129 288 29.2 lateraloccipital 3735 2453 8064 2.956 0.846 0.142 0.075 76 9.8 lateralorbitofrontal 3530 2534 5330 2.221 0.769 0.290 0.950 1348 52.5 lingual 2071 1289 3754 2.410 0.824 0.186 0.988 465 18.5 medialorbitofrontal 4914 3221 11148 3.013 0.852 0.138 0.083 133 20.3 middletemporal 978 546 1304 2.157 0.728 0.143 0.268 166 8.3 parahippocampal 3009 1847 4645 2.366 0.704 0.143 0.090 91 11.9 paracentral 1916 1184 3673 2.827 0.701 0.141 0.166 115 6.2 parsopercularis 1047 672 2715 3.259 0.878 0.149 0.088 23 3.6 parsorbitalis 2255 1402 4054 2.752 0.681 0.124 0.051 64 5.2 parstriangularis 1103 785 1166 1.692 0.589 0.222 0.134 110 5.3 pericalcarine 6012 3702 8409 2.109 0.665 0.110 0.056 97 11.0 postcentral 1002 634 1562 2.748 0.710 0.142 0.044 14 1.8 posteriorcingulate 6982 4295 12152 2.605 0.610 0.118 0.069 115 24.3 precentral 4863 2994 7725 2.595 0.716 0.140 0.086 131 17.6 precuneus 1083 718 1733 2.536 0.796 0.185 0.083 63 3.9 rostralanteriorcingulate 5131 3253 9234 2.454 0.735 0.141 0.055 73 11.8 rostralmiddlefrontal 12048 7862 22948 2.715 0.679 0.139 0.155 599 32.8 superiorfrontal 6359 4096 9578 2.261 0.604 0.127 0.066 98 20.3 superiorparietal 7241 4601 14414 2.677 0.807 0.148 0.130 353 43.1 superiortemporal 4074 2693 7625 2.671 0.712 0.133 0.057 56 10.2 supramarginal 489 286 539 1.792 0.425 0.155 0.093 14 1.8 transversetemporal 3195 2039 5918 2.971 0.880 0.181 0.610 366 127.2 insula #-------------------------------------------- #@# Cortical ribbon mask Wed Jul 27 04:00:37 EDT 2016 /usr/local/freesurfer/subjects/jmcoreg/mri mris_volmask --label_left_white 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 --save_ribbon jmcoreg Segmentation fault (core dumped) Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 20:41:14 UTC 2012 i686 i686 i386 GNU/Linux recon-all -s jmcoreg exited with ERRORS at Wed Jul 27 04:00:38 EDT 2016 To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting

2 1

Recent error in the dev version
by Liu, Daniel 27 Jul '16

27 Jul '16

Hi, I'm an undergraduate learning about/working with freesurfer as part of my summer research project. In early-mid June I downloaded the dev version of Freesurfer to use on my mac. When I ran it at that time, I had no problem. Recently I started working on a cluster computer (linux) and got the same problem outlined in this exchange: https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg48412.html.<https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg48412.html> I was wondering if I could get an update on this and possibly an explanation as to what the problem was. I was told that the dev version on the cluster was updated today (with the fixed version as mentioned in the email) but I still got that message after running the program. Also, were there any major changes to the program that I should be aware about in terms affecting data analysis of the MRI patient data for the hippocampus subfields tool? If you could let me know, it would be appreciated. Thanks, Daniel

2 1

Question about error
by Dorsa Haji Ghaffari 27 Jul '16

27 Jul '16

Hi, I ran recon-all on a series of dicom MRIs but it exited with errors, I have attached the recon-all.log here . I appreciate any suggestions. thank you Dorsa

1 0

TRACULA: 20% default threshold
by Newbold, Dillan 27 Jul '16

27 Jul '16

Hi everyone, I’m having a little trouble understanding the exact meaning of the 20% default threshold used in the freeview -tv option and dmri_pathstats --pthr. I’ve seen multiple threads where Anastasia said that it is 20% of the maximum value in the probability distribution—which corresponds to the maximum number of sample paths intersecting a single voxel—but the default thresholds I’ve seen set by the -tv option are generally lower than that. For example, I have one subject in whom the right CST has a maximum value in its path.pd.nii.gz file of 300. I would expect based on what I’ve read in the mail archives that the threshold would be set at 60, but when I open the merged file with the -tv option the default threshold for the right CST is 35. My current best guess is that the default threshold is set to produce a volume that has a probability sum equal to 20% of the sum of the pre-threshold volume. (That is, the sum of intensities of all voxels in the path.pd.nii.gz file should be 5 times the sum of the voxels above the default threshold.) Is that accurate? Thanks for all you’ve done to develop this tool. It’s brilliant and I want to understand as much of it as I can. -Dillan

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