Hello FreeSurfer experts,
I am trying to run recon-all on a nifti file converted from PAR/SEC using dcm2niix, and this error came up pretty soon after the script started to run;
>> mri_convert.bin /home/lab/Desktop/freesurfer/subjects/sub-06_run-01_T1w.nii.gz /home/lab/Desktop/freesurfer/subjects/sub-06-error/mri/orig/001.mgz
$Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $
reading from /home/lab/Desktop/freesurfer/subjects/sub-06_run-01_T1w.nii.gz...
TR=2000.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 0, 0)
j_ras = (-0, 0.916013, -0.401149)
k_ras = (0, 0.401149, 0.916013)
writing to /home/lab/Desktop/freesurfer/subjects/sub-06-error/mri/orig/001.mgz...
#--------------------------------------------
#@# MotionCor Tue Aug 8 17:42:13 EDT 2017
Found 1 runs
/home/lab/Desktop/freesurfer/subjects/sub-06-error/mri/orig/001.mgz
Checking for (invalid) multi-frame inputs...
ERROR: input(s) cannot have multiple frames!
I am pretty inexperienced with FreeSurfer, but does this error mean I need to slice my file? I would really appreciate if someone could give me some ideas for commands to use.
Thank you all!
Best,
Idil