Hi Elijah

gcuts is a contributed tool (from Mike Chee's lab) and not one that we wrote, so I don't think we can help.

sorry Bruce On Wed, 9 Aug 2017, Elijah Mak wrote:

Hi Freesurfer Team,

I am using gcut to improve the skull stripping on some subjects. I noticed that it is also removing some of the voxels in the ventricles of the brainmask.mgz (picture attached). Is this normal behaviour?

Thanks for your time.

Best Wishes, Elijah