External Email - Use Caution
Thanks Matt!
Should I also add the -autorecon3 flag, or does that get performed
automatically if I put in "autorecon2"?
Best,
Darko
> Message: 4
> Date: Mon, 30 Nov 2020 19:16:06 +0000
> From: "Glasser, Matthew" <glasserm(a)wustl.edu>
> Subject: Re: [Freesurfer] arguments to use after pial edits {Disarmed}
> To: Freesurfer support list <freesurfer(a)nmr.mgh.harvard.edu>
> Message-ID: <274FD511-F94F-4BC1-AE0C-804F1A6A3A24(a)wustl.edu>
> Content-Type: text/plain; charset="utf-8"
>
> External Email - Use Caution
>
> I find the recon-all table to be helpful:
>
>
> http://secure-web.cisco.com/1rQT1vL5GWrATp5z0Ct2LBj8MsEx75qijDiNOIOc1xsGTqc…
>
> In this case, you probably need to run -autorecon2, as all subsequent
> steps are affected by the brainmask.mgz file.
>
> Matt.
>
>
>
