External Email - Use Caution

I think so.

Matt.

From: freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Darko Komnenić komnenicd@gmail.com Reply-To: Freesurfer support list freesurfer@nmr.mgh.harvard.edu Date: Monday, November 30, 2020 at 6:23 PM To: freesurfer freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] arguments to use after pial edits

External Email - Use Caution Thanks Matt! Should I also add the -autorecon3 flag, or does that get performed automatically if I put in "autorecon2"? Best, Darko

Message: 4 Date: Mon, 30 Nov 2020 19:16:06 +0000 From: "Glasser, Matthew" <glasserm@wustl.edumailto:glasserm@wustl.edu> Subject: Re: [Freesurfer] arguments to use after pial edits {Disarmed} To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu> Message-ID: <274FD511-F94F-4BC1-AE0C-804F1A6A3A24@wustl.edumailto:274FD511-F94F-4BC1-AE0C-804F1A6A3A24@wustl.edu> Content-Type: text/plain; charset="utf-8"

External Email - Use Caution

I find the recon-all table to be helpful:

http://secure-web.cisco.com/1rQT1vL5GWrATp5z0Ct2LBj8MsEx75qijDiNOIOc1xsGTqc0...

In this case, you probably need to run -autorecon2, as all subsequent steps are affected by the brainmask.mgz file.

Matt.

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