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Thank you for your answer!
I think I should clarify this question a little bit.
So this is about correcting the Base. And run recon-all *after *correcting
the Base.
What command should I use here? if I want to regenerate only the Base after
correcting it?
Because the common below does not work: (ERROR: must specify subjects for
base subject using -base-tp)
recon-all -base OAS2_0057 -autorecon-pial
But if I use "recon-all -base OAS2_0001 -tp OAS2_0001_MR1 -tp OAS2_0001_MR2
-all"
that just creates a new Base based on the cross MR1 and MR2.
My question is how can I regenerate the corrected Base? What command should
I use?
Thank you so much!
All the best,
Eszter Boros
Eszter Boros <boros.eszter0226(a)gmail.com> ezt írta (időpont: 2021. aug. 8.,
V, 19:04):
> Dear FreeSurfer Team,
>
> I am working on a longitudinal pipeline and after correcting the Cross and
> generating the Base, I can still see some pial problems sometimes (on the
> Base).
>
> I read on the Freesurfer website that it is possible to correct and
> regenerate only the Base, but when I use this command:
>
> recon-all -base OAS2_0057 -autorecon-pial
>
> /where OAS2_0057 is the name of the Base/
>
> I get the following error message:
>
> ERROR: must specify subjects for base subject using -base-tp
>
>
> Why is this not working? I am using Freesurefer 7.1.1.
>
> Thank you so much!
>
> All the best,
> Eszter Boros
>
>